jgi.p|Nanoce1779_2|603329, mRNA_8609 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603329
Unique NamemRNA_8609
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length896
Alignment locationscaffold_26:335810..336705 +

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Properties
Property NameValue
TranscriptId603415
TrackFilteredModels2
ProteinId603329
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:335810..336705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603329gene_8609Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603329mRNA_8609-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8609CDS_8609Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8609 ID=mRNA_8609|Name=jgi.p|Nanoce1779_2|603329|organism=Nannochloropsis oceanica|type=mRNA|length=896bp
AGACATGGTCCGACTCGTCAGCAACGCCGGCAGCACCAGCTCCCTCGTGA
CCAACACACCCTCAGTCTTACTACCACCACCCAAGCCGCTGACTAAAGAT
GGACTTCTTGCCCTAAACGCCAAGCCTGTCACCCTCATTGGCTTCGGCAG
CCTCCTGAGCGAGACCTCGTCCCGGATGACCTTTCCACAGCTGGTCAATT
TTAGGCTTGGCCGCGTACAAGGCTACCGGAGGCTCTTTCGCCACCCAGCA
GCCATCTTCTTTGAGCGAGGCATTGCTCTCCCTGCCTCCAAGGAATATTC
CAGTCTGAGTGTGGAACCTGTTGAAGGAGATGACTCTTCTTCCAGCGGCT
TTGTATGCAGCTTGTTTGACGTCCTTGACTTCAATGTTCAGAATTTCGTT
GACCGAGAAGAGGAGTTTGCCTTCACTATGGCACAATACATGGAGCTGGA
GGGGGAGAAAAGGGTTGGCCAAGGGCTGATGTGTCTGGCAACAACCGATG
CCCACGTGGAAGAGAGGTGGGGGGAGGGGTATATCAAACGAAAGTACGGC
GTACACGGTTTAAACAGTATTTGGGAACTGGATAGCACGATTTTACCTTG
CCCTGTTTATCTGCGGCACTGTGTGCTGTCGGCGGGGAAGAAGGGGGGAA
AGGAGGGGTTGGCGTATCAAAGTTTTGTTAAGGAAACGTTTTTGGCAGAT
CGCAAGACGACGATTGAGGAGCATTTGATACGGAGGCCGGATATAATGCT
GATGGAGCCCCCGGCGAGTGTGCTAGGACGGTATAGCGGGTAGGGATATC
ATTAGACGATAAGATTTCAAATATAAAATAGAATGAAAAATAATGAAAGG
AAATGAAAACGGGTGAATCGAAAAGTGTGAGGGAGGGAACAAGGGA
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protein sequence of jgi.p|Nanoce1779_2|603329

>mRNA_8609-protein ID=mRNA_8609-protein|Name=jgi.p|Nanoce1779_2|603329|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MVRLVSNAGSTSSLVTNTPSVLLPPPKPLTKDGLLALNAKPVTLIGFGSL
LSETSSRMTFPQLVNFRLGRVQGYRRLFRHPAAIFFERGIALPASKEYSS
LSVEPVEGDDSSSSGFVCSLFDVLDFNVQNFVDREEEFAFTMAQYMELEG
EKRVGQGLMCLATTDAHVEERWGEGYIKRKYGVHGLNSIWELDSTILPCP
VYLRHCVLSAGKKGGKEGLAYQSFVKETFLADRKTTIEEHLIRRPDIMLM
EPPASVLGRYSG*
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mRNA from alignment at scaffold_26:335810..336705+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8609 ID=mRNA_8609|Name=jgi.p|Nanoce1779_2|603329|organism=Nannochloropsis oceanica|type=mRNA|length=896bp|location=Sequence derived from alignment at scaffold_26:335810..336705+ (Nannochloropsis oceanica)
AGACATGGTCCGACTCGTCAGCAACGCCGGCAGCACCAGCTCCCTCGTGA
CCAACACACCCTCAGTCTTACTACCACCACCCAAGCCGCTGACTAAAGAT
GGACTTCTTGCCCTAAACGCCAAGCCTGTCACCCTCATTGGCTTCGGCAG
CCTCCTGAGCGAGACCTCGTCCCGGATGACCTTTCCACAGCTGGTCAATT
TTAGGCTTGGCCGCGTACAAGGCTACCGGAGGCTCTTTCGCCACCCAGCA
GCCATCTTCTTTGAGCGAGGCATTGCTCTCCCTGCCTCCAAGGAATATTC
CAGTCTGAGTGTGGAACCTGTTGAAGGAGATGACTCTTCTTCCAGCGGCT
TTGTATGCAGCTTGTTTGACGTCCTTGACTTCAATGTTCAGAATTTCGTT
GACCGAGAAGAGGAGTTTGCCTTCACTATGGCACAATACATGGAGCTGGA
GGGGGAGAAAAGGGTTGGCCAAGGGCTGATGTGTCTGGCAACAACCGATG
CCCACGTGGAAGAGAGGTGGGGGGAGGGGTATATCAAACGAAAGTACGGC
GTACACGGTTTAAACAGTATTTGGGAACTGGATAGCACGATTTTACCTTG
CCCTGTTTATCTGCGGCACTGTGTGCTGTCGGCGGGGAAGAAGGGGGGAA
AGGAGGGGTTGGCGTATCAAAGTTTTGTTAAGGAAACGTTTTTGGCAGAT
CGCAAGACGACGATTGAGGAGCATTTGATACGGAGGCCGGATATAATGCT
GATGGAGCCCCCGGCGAGTGTGCTAGGACGGTATAGCGGGTAGGGATATC
ATTAGACGATAAGATTTCAAATATAAAATAGAATGAAAAATAATGAAAGG
AAATGAAAACGGGTGAATCGAAAAGTGTGAGGGAGGGAACAAGGGA
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Coding sequence (CDS) from alignment at scaffold_26:335810..336705+

>mRNA_8609 ID=mRNA_8609|Name=jgi.p|Nanoce1779_2|603329|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_26:335810..336705+ (Nannochloropsis oceanica)
ATGGTCCGACTCGTCAGCAACGCCGGCAGCACCAGCTCCCTCGTGACCAA
CACACCCTCAGTCTTACTACCACCACCCAAGCCGCTGACTAAAGATGGAC
TTCTTGCCCTAAACGCCAAGCCTGTCACCCTCATTGGCTTCGGCAGCCTC
CTGAGCGAGACCTCGTCCCGGATGACCTTTCCACAGCTGGTCAATTTTAG
GCTTGGCCGCGTACAAGGCTACCGGAGGCTCTTTCGCCACCCAGCAGCCA
TCTTCTTTGAGCGAGGCATTGCTCTCCCTGCCTCCAAGGAATATTCCAGT
CTGAGTGTGGAACCTGTTGAAGGAGATGACTCTTCTTCCAGCGGCTTTGT
ATGCAGCTTGTTTGACGTCCTTGACTTCAATGTTCAGAATTTCGTTGACC
GAGAAGAGGAGTTTGCCTTCACTATGGCACAATACATGGAGCTGGAGGGG
GAGAAAAGGGTTGGCCAAGGGCTGATGTGTCTGGCAACAACCGATGCCCA
CGTGGAAGAGAGGTGGGGGGAGGGGTATATCAAACGAAAGTACGGCGTAC
ACGGTTTAAACAGTATTTGGGAACTGGATAGCACGATTTTACCTTGCCCT
GTTTATCTGCGGCACTGTGTGCTGTCGGCGGGGAAGAAGGGGGGAAAGGA
GGGGTTGGCGTATCAAAGTTTTGTTAAGGAAACGTTTTTGGCAGATCGCA
AGACGACGATTGAGGAGCATTTGATACGGAGGCCGGATATAATGCTGATG
GAGCCCCCGGCGAGTGTGCTAGGACGGTATAGCGGGTAG
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Synonyms
Publications