jgi.p|Nanoce1779_2|603323, mRNA_8607 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603323
Unique Name	mRNA_8607
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1964
Alignment location	scaffold_26:330870..332833 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603409
Track	FilteredModels2
ProteinId	603323

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:330870..332833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603323	gene_8607	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603323	mRNA_8607-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8607	CDS_8607	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:330870..332833+
coding sequence from alignment at scaffold_26:330870..332833+

mRNA sequence

>mRNA_8607 ID=mRNA_8607|Name=jgi.p|Nanoce1779_2|603323|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp
AGCGCGGGGCAGCATACGTCAGTGGGGACTCAGGGGCGGCCCTATTTGAG
CGCTTCACCCACGAGTACTTCTCTTCACGCTATCAGCCACATGGTTGCAT
TAGTTCCACCAGCCTTTTGCGCCTTCGTGCTGCCCTCCTTGCGCCGGGCA
GCCATCTTCCCCCCCCTACCCCGACATACGCTTTCCATGGCCCCAACAGC
GGCTCTTGTGTCATTCTCTAGCTCTCCTTCTCCTCTCGCTGCCAATACAG
CGTTGGCCATATCGCCTTTGGCCACCGCGGGCGCGTCCCTCCTCCTCTCC
TCGACCATAGGCCTGCTCCTGGAAAAAAATACCAAACCTGGACACGCCTT
GGGGGCCTCCCTGATCACTTTCATTTTACAGGCAGTGTTATCTAATTTCC
ATCTTATTCCAATGGACTCGCCTGCCTACGATGCGTGCTGGGGAAAAGTA
TTGCCTGCCTCCCTTTCTCTTTCCGTCCTCCTTGCCGTCGCTGCCGCCGG
CTCCGCCACCGCTACCGCTGCCGCCGCCCCCACTTTGTCCCCTTCAGCTG
CACGACCATCACAACTATCACCACTCCACTTGAAACCATGGAGAATCATG
GAAACGCCGTTGTGGAAAGTCACCATCGCCAACATCTTCGGTGCCATTGG
TGCGCTGCTCGGTGGCCTCCTAGCATTCCAACTTGCCTCACACTACCAAA
CTCAATTCACCCGCATCGTCCTCGCGAAAGTTGTTGCCTCTATCGCCACA
ACCCACATTGGAGGTTCGATCAATTTCTTCCAAGTCGCGCGGGCCGTTGG
TCTGGATCAGGTTGGTACCACACCCGCCCTCCTTCTCTTTCACCCTCTCT
CCATTCATCGCTTTCTTCCTTTCAAAATTCGAAAAGGTGGGACGATATCA
GCTAGTAGATTCTGCTTATATTCCTCCTTCTTACTGCACTTATGTTTCTC
CACCCATTGGCTCCCCAGGAAGGGCAAGGATTGTTAGGTGCAGTTGCAGG
GGCTGACATCTTTTTGATGGCTTTGTATTTCGCTGCCTTGTTGGGGATAC
AACGGAGCCCGGCGGGGACAGCTGCATTCTTGCGGCACGGTGGATTAGAT
AAAGGATGGGGAAAAGAATCAGGAGAAGTAGGGATGGGGAAGGCGAATAG
TAGAGCTGTTGTTTCTTTCACATCCTCTCCCTCTCCCGCTGCTGATGATG
CTGCTTCGCGGGAGACAGCGGCAGTCATCTCCTTCTCCTCCCTTCTTCCC
TCTTTCGTTGCCCTTCTTTTGGCTTTTGCAGCAGGAGAGGGTGGGCAATG
GATCGAGCGAAAAGTAGGGGTTCCTGGAATGGCGGCAGGGACCATCACTG
CTCTCTCGATAGGTGTTTTTGGCCTGCTTCGACGCGTGTCTCCTCGTTTT
TTTGCACTCGTTGCACGCCCTGCGAAGAACTTGTCTTCATTTTTGTTCAG
CCTCTTCTTTGCTGCCATTGGCGCGGGAGCTTCGCTTGCGCAGTTGGTGC
AGTCGGGGCCGGTAATCGTGGCTTTGATGAGCTTGAGTTTGTTTATTCAT
CTCATTACCACCCTGGGCGGACTCCGTGTATATAATGGCTGTGTGCCCCC
CTTGGCGAGGGTAGCCGTTGATGAGGCTGTGATAGGCTCCAATGCCAATA
TCGGAGGGCCAGCCACAGCTGCTGCTATGGCGGGCTCCATCGACCGGCCC
GATTTGGTCTTACCTGCTGCCGCGACGGGGACGGGCGGTTATGCCCTTGC
CACGTTTCTGGGGGTGGTGCTGTTTAGAAGCCTGACGAGATGATTTCCAT
CACCACACCATCATGAGAAGTGTATGTCCGCTGAGAATCATGGTTTCCTC
CTTTGTCGTGATACTTTTGGATAAAAGAAAAAAAATGCACTCCGAATAAG
ACGAGGGAAAATACCCGTCCATGTCTTTGCATTTGTTGATTCTGTTTCTA
CCCGTTCAAACTTT

protein sequence of jgi.p|Nanoce1779_2|603323

>mRNA_8607-protein ID=mRNA_8607-protein|Name=jgi.p|Nanoce1779_2|603323|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MFLHPLAPQEGQGLLGAVAGADIFLMALYFAALLGIQRSPAGTAAFLRHG
GLDKGWGKESGEVGMGKANSRAVVSFTSSPSPAADDAASRETAAVISFSS
LLPSFVALLLAFAAGEGGQWIERKVGVPGMAAGTITALSIGVFGLLRRVS
PRFFALVARPAKNLSSFLFSLFFAAIGAGASLAQLVQSGPVIVALMSLSL
FIHLITTLGGLRVYNGCVPPLARVAVDEAVIGSNANIGGPATAAAMAGSI
DRPDLVLPAAATGTGGYALATFLGVVLFRSLTR*

mRNA from alignment at scaffold_26:330870..332833+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8607 ID=mRNA_8607|Name=jgi.p|Nanoce1779_2|603323|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at scaffold_26:330870..332833+ (Nannochloropsis oceanica)
AGCGCGGGGCAGCATACGTCAGTGGGGACTCAGGGGCGGCCCTATTTGAG
CGCTTCACCCACGAGTACTTCTCTTCACGCTATCAGCCACATGGTTGCAT
TAGTTCCACCAGCCTTTTGCGCCTTCGTGCTGCCCTCCTTGCGCCGGGCA
GCCATCTTCCCCCCCCTACCCCGACATACGCTTTCCATGGCCCCAACAGC
GGCTCTTGTGTCATTCTCTAGCTCTCCTTCTCCTCTCGCTGCCAATACAG
CGTTGGCCATATCGCCTTTGGCCACCGCGGGCGCGTCCCTCCTCCTCTCC
TCGACCATAGGCCTGCTCCTGGAAAAAAATACCAAACCTGGACACGCCTT
GGGGGCCTCCCTGATCACTTTCATTTTACAGGCAGTGTTATCTAATTTCC
ATCTTATTCCAATGGACTCGCCTGCCTACGATGCGTGCTGGGGAAAAGTA
TTGCCTGCCTCCCTTTCTCTTTCCGTCCTCCTTGCCGTCGCTGCCGCCGG
CTCCGCCACCGCTACCGCTGCCGCCGCCCCCACTTTGTCCCCTTCAGCTG
CACGACCATCACAACTATCACCACTCCACTTGAAACCATGGAGAATCATG
GAAACGCCGTTGTGGAAAGTCACCATCGCCAACATCTTCGGTGCCATTGG
TGCGCTGCTCGGTGGCCTCCTAGCATTCCAACTTGCCTCACACTACCAAA
CTCAATTCACCCGCATCGTCCTCGCGAAAGTTGTTGCCTCTATCGCCACA
ACCCACATTGGAGGTTCGATCAATTTCTTCCAAGTCGCGCGGGCCGTTGG
TCTGGATCAGGTTGGTACCACACCCGCCCTCCTTCTCTTTCACCCTCTCT
CCATTCATCGCTTTCTTCCTTTCAAAATTCGAAAAGGTGGGACGATATCA
GCTAGTAGATTCTGCTTATATTCCTCCTTCTTACTGCACTTATGTTTCTC
CACCCATTGGCTCCCCAGGAAGGGCAAGGATTGTTAGGTGCAGTTGCAGG
GGCTGACATCTTTTTGATGGCTTTGTATTTCGCTGCCTTGTTGGGGATAC
AACGGAGCCCGGCGGGGACAGCTGCATTCTTGCGGCACGGTGGATTAGAT
AAAGGATGGGGAAAAGAATCAGGAGAAGTAGGGATGGGGAAGGCGAATAG
TAGAGCTGTTGTTTCTTTCACATCCTCTCCCTCTCCCGCTGCTGATGATG
CTGCTTCGCGGGAGACAGCGGCAGTCATCTCCTTCTCCTCCCTTCTTCCC
TCTTTCGTTGCCCTTCTTTTGGCTTTTGCAGCAGGAGAGGGTGGGCAATG
GATCGAGCGAAAAGTAGGGGTTCCTGGAATGGCGGCAGGGACCATCACTG
CTCTCTCGATAGGTGTTTTTGGCCTGCTTCGACGCGTGTCTCCTCGTTTT
TTTGCACTCGTTGCACGCCCTGCGAAGAACTTGTCTTCATTTTTGTTCAG
CCTCTTCTTTGCTGCCATTGGCGCGGGAGCTTCGCTTGCGCAGTTGGTGC
AGTCGGGGCCGGTAATCGTGGCTTTGATGAGCTTGAGTTTGTTTATTCAT
CTCATTACCACCCTGGGCGGACTCCGTGTATATAATGGCTGTGTGCCCCC
CTTGGCGAGGGTAGCCGTTGATGAGGCTGTGATAGGCTCCAATGCCAATA
TCGGAGGGCCAGCCACAGCTGCTGCTATGGCGGGCTCCATCGACCGGCCC
GATTTGGTCTTACCTGCTGCCGCGACGGGGACGGGCGGTTATGCCCTTGC
CACGTTTCTGGGGGTGGTGCTGTTTAGAAGCCTGACGAGATGATTTCCAT
CACCACACCATCATGAGAAGTGTATGTCCGCTGAGAATCATGGTTTCCTC
CTTTGTCGTGATACTTTTGGATAAAAGAAAAAAAATGCACTCCGAATAAG
ACGAGGGAAAATACCCGTCCATGTCTTTGCATTTGTTGATTCTGTTTCTA
CCCGTTCAAACTTT

Coding sequence (CDS) from alignment at scaffold_26:330870..332833+

>mRNA_8607 ID=mRNA_8607|Name=jgi.p|Nanoce1779_2|603323|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_26:330870..332833+ (Nannochloropsis oceanica)
ATGTTTCTCCACCCATTGGCTCCCCAGGAAGGGCAAGGATTGTTAGGTGC
AGTTGCAGGGGCTGACATCTTTTTGATGGCTTTGTATTTCGCTGCCTTGT
TGGGGATACAACGGAGCCCGGCGGGGACAGCTGCATTCTTGCGGCACGGT
GGATTAGATAAAGGATGGGGAAAAGAATCAGGAGAAGTAGGGATGGGGAA
GGCGAATAGTAGAGCTGTTGTTTCTTTCACATCCTCTCCCTCTCCCGCTG
CTGATGATGCTGCTTCGCGGGAGACAGCGGCAGTCATCTCCTTCTCCTCC
CTTCTTCCCTCTTTCGTTGCCCTTCTTTTGGCTTTTGCAGCAGGAGAGGG
TGGGCAATGGATCGAGCGAAAAGTAGGGGTTCCTGGAATGGCGGCAGGGA
CCATCACTGCTCTCTCGATAGGTGTTTTTGGCCTGCTTCGACGCGTGTCT
CCTCGTTTTTTTGCACTCGTTGCACGCCCTGCGAAGAACTTGTCTTCATT
TTTGTTCAGCCTCTTCTTTGCTGCCATTGGCGCGGGAGCTTCGCTTGCGC
AGTTGGTGCAGTCGGGGCCGGTAATCGTGGCTTTGATGAGCTTGAGTTTG
TTTATTCATCTCATTACCACCCTGGGCGGACTCCGTGTATATAATGGCTG
TGTGCCCCCCTTGGCGAGGGTAGCCGTTGATGAGGCTGTGATAGGCTCCA
ATGCCAATATCGGAGGGCCAGCCACAGCTGCTGCTATGGCGGGCTCCATC
GACCGGCCCGATTTGGTCTTACCTGCTGCCGCGACGGGGACGGGCGGTTA
TGCCCTTGCCACGTTTCTGGGGGTGGTGCTGTTTAGAAGCCTGACGAGAT
GA

Synonyms

Publications