jgi.p|Nanoce1779_2|210178, mRNA_8603 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|210178
Unique Name	mRNA_8603
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2096
Alignment location	scaffold_26:316618..318970 -

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Properties


Property Name	Value
TranscriptId	210264
Track	FilteredModels2
ProteinId	210178

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:316618..318970 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|210178	gene_8603	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|210178	mRNA_8603-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8603	CDS_8603	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:316618..318970-
coding sequence from alignment at scaffold_26:316618..318970-

mRNA sequence

>mRNA_8603 ID=mRNA_8603|Name=jgi.p|Nanoce1779_2|210178|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp
GTTTTGGGGAAGCAAAGAGGATGGGTGAGGAGCACAGATTGGTTTCCCCT
CCTAGCGATCCTGTCGCCGCTTCGTTCCGAAGTCAGGGCTCCAGTCTTTT
GGCCCGCTGTAACCGAAGCATCAAGTCAAGAACATGGCCCGGCAGACACG
CCCCATCCACCATCGCCAGTCCCTGTGGGCATCTTTGTCCTCCCTTCTCC
TCTCATTGGGTTTTGCTGCCTTGGCCGTTGTCTTTCACACCTTGATCATC
ATCCCCTGGCAAGCTGCACGGGCAGCCCGTCTGAGAGGAGGGTGGGCCTC
GGTATCGGTCGAGGAAGACTCGCCTTTCAACCGTGCAGGATGTGATTTGC
TACGGATTGACGCCGCCAGCCTCGACAAGGCAGCGTTCGAACGTTTGTAT
CGTGGACAGCGTCCACTGGTTTTGACTTCAACGTCATCCCCCCTTGTGTT
TGCGAGCAGGCGTCAATGGCCTTTTGTCAATGGCAAGGCGAAAGAGGGGG
TGGAGGCATGGGAGAAGGAAGGGCTCTTGGCCCGACATGGACAGAATTTG
ACGGTGCTTGTCGGAGGGATAGAGTTGTGGGAACAGGAGGAAGTGGGAGA
GGAAGGAATGATGGGATTGGGTTTGGTGAAGAGGAGGAGGAGAAGAAGAG
AGAGCACATTGTCGGGTACCTGCGAGAGCACTAGGAGCAGCAGTGGTGGT
GGAATCCGCTTGCCACTTGCAGAGTATATCACCAGATACTTCGACGCAAA
AGAGAGCGAAGACGCTGCGGTGGAGGAAGAGAGCGAGGAAGAGGAGAAGG
AAATGGAGGTGGCACGCACGGCCTTGGCTTCGTGGCGTGTGAGCGACTTA
CCTGCAGAGCTGGCGAGGGCCGTGCAGACCCCTCCTCAGTTCCGCGGATG
GTGGGTCAGAAACGACGAGAAACAACAGCAACTACAGCAGCACGAGCATC
AGCAAGGGGAAACCTCCCACAAAGACGCGCACGACCACGTGCGGATCATC
CTCGGCAAGGAGTTAGAAGGGAAAGCCTGGACGGCTTCAGACCGCGAGGA
ATGGACGGGCCTCCTCTTGGGGGGTTCCGTCCTCTGGTCCTTCTACCCTC
CAGGGCAAGGGCTGCAAAACATGACTATGCCCGGAAAAGGCCATTGTTTG
CTAGGGCCGTTGGAGTGGGTCCTTAGTACGTTGGATGCCTTTGTCGATCA
TGAAGGAGTGTCGGATCCGGAGGAAGGGAGGATGGACCCCCCTCCTTTGG
AGTGCTGGCAGCGGCCAGGGGATGTGGTGTACGTACCCACGGGGTGGAAG
AGTATGAGGGTGCATGTAGGGGGGGGCGTGGTACTGGTGGAGGGGGAGGG
GAGGAGAGGCGATTCGATGGAGGATGAAGGGGAGGAAGGGAGGGAGGAGA
GGGTGTTGCGGGCTAGTCTGGCGACGCTGCAGCACCAGCCACGGGATTTC
GAAGCTCTGATAGCGGCAGGCAAAGCGTACGTGCGCCAAGCCTCGAGGAT
TTTATCATCACCTGCAGAATCAGCAGGCGCAGCAGGCACAGCAGGAGCAG
GAGAGGAAACATCGCTGTTAAAAGAAGCTCTGTGGTGCTTCCGCACTGCT
GCTGTAGTCCGCCCCTGTGACCCTACCCCCCATCTCCATGCCGCCCAAGT
CCTTCTCACCATGGGGGGTACGAATGAGTATGAGCAGGCCAAGGCGTTGA
TTCATACGGCGGAAGAAGAGTTTTTTACCGCGTCTTCCCCCACATGTCCT
TTCCCTTCCCACGTGCCGCACGGACGCGTGCTGGCTCTCCTGGCAGAGGC
CCGTTTAAGGTTTGCGCGTTTTTTCATTCAGGCAGGGGATGAGGTGGAGG
GACGACGGGCCCTTGCTGAGGTTTTAGCATTGCGACCTACCTACCTAGAG
GCACATCAACTGTTGGTGACGATGTTGAGGGAGGTAGGGAATGGGGAGGA
GGCGCGAGAGGCAATGAGACGCGCTCTTGTTGCCCTGGGCCCGCGCGGAC
AGGATGAAAGAGTTGTAAAAGCCTTTGAGGGATTGCTTACATCGCAGACA
GATGTAAAATATGACCGGACGAACTTAGAAAGATAAAAAGAACCAA

protein sequence of jgi.p|Nanoce1779_2|210178

>mRNA_8603-protein ID=mRNA_8603-protein|Name=jgi.p|Nanoce1779_2|210178|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MARQTRPIHHRQSLWASLSSLLLSLGFAALAVVFHTLIIIPWQAARAARL
RGGWASVSVEEDSPFNRAGCDLLRIDAASLDKAAFERLYRGQRPLVLTST
SSPLVFASRRQWPFVNGKAKEGVEAWEKEGLLARHGQNLTVLVGGIELWE
QEEVGEEGMMGLGLVKRRRRRRESTLSGTCESTRSSSGGGIRLPLAEYIT
RYFDAKESEDAAVEEESEEEEKEMEVARTALASWRVSDLPAELARAVQTP
PQFRGWWVRNDEKQQQLQQHEHQQGETSHKDAHDHVRIILGKELEGKAWT
ASDREEWTGLLLGGSVLWSFYPPGQGLQNMTMPGKGHCLLGPLEWVLSTL
DAFVDHEGVSDPEEGRMDPPPLECWQRPGDVVYVPTGWKSMRVHVGGGVV
LVEGEGRRGDSMEDEGEEGREERVLRASLATLQHQPRDFEALIAAGKAYV
RQASRILSSPAESAGAAGTAGAGEETSLLKEALWCFRTAAVVRPCDPTPH
LHAAQVLLTMGGTNEYEQAKALIHTAEEEFFTASSPTCPFPSHVPHGRVL
ALLAEARLRFARFFIQAGDEVEGRRALAEVLALRPTYLEAHQLLVTMLRE
VGNGEEAREAMRRALVALGPRGQDERVVKAFEGLLTSQTDVKYDRTNLER
*

mRNA from alignment at scaffold_26:316618..318970-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8603 ID=mRNA_8603|Name=jgi.p|Nanoce1779_2|210178|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at scaffold_26:316618..318970- (Nannochloropsis oceanica)
GTTTTGGGGAAGCAAAGAGGATGGGTGAGGAGGTAAGGGTCTTCCAGCAT
GGCATTTGTGGCGTCAGGGCCGGCACAAAATTTCCTGCTGCTGCTGTTTG
TGCCGCTGACGATGCCGCATTTGTGTACTTGACATATATTCCATATTTAT
GTGTAGGGATGGTGAGAGTGGCATTCGAAGAAGCCTTCGCCAACACTGCC
TCAACGTCTCTTCCTGGCCTCCTTCCTTTTCCTTCACGCGTCTCGATAAC
GTTCTTGCCTCCAAACCCCACACACACTCCCTACGAAAGCACAGATTGGT
TTCCCCTCCTAGCGATCCTGTCGCCGCTTCGTTCCGAAGTCAGGGCTCCA
GTCTTTTGGCCCGCTGTAACCGAAGCATCAAGTCAAGAACATGGCCCGGC
AGACACGCCCCATCCACCATCGCCAGTCCCTGTGGGCATCTTTGTCCTCC
CTTCTCCTCTCATTGGGTTTTGCTGCCTTGGCCGTTGTCTTTCACACCTT
GATCATCATCCCCTGGCAAGCTGCACGGGCAGCCCGTCTGAGAGGAGGGT
GGGCCTCGGTATCGGTCGAGGAAGACTCGCCTTTCAACCGTGCAGGATGT
GATTTGCTACGGATTGACGCCGCCAGCCTCGACAAGGCAGCGTTCGAACG
TTTGTATCGTGGACAGCGTCCACTGGTTTTGACTTCAACGTCATCCCCCC
TTGTGTTTGCGAGCAGGCGTCAATGGCCTTTTGTCAATGGCAAGGCGAAA
GAGGGGGTGGAGGCATGGGAGAAGGAAGGGCTCTTGGCCCGACATGGACA
GAATTTGACGGTGCTTGTCGGAGGGATAGAGTTGTGGGAACAGGAGGAAG
TGGGAGAGGAAGGAATGATGGGATTGGGTTTGGTGAAGAGGAGGAGGAGA
AGAAGAGAGAGCACATTGTCGGGTACCTGCGAGAGCACTAGGAGCAGCAG
TGGTGGTGGAATCCGCTTGCCACTTGCAGAGTATATCACCAGATACTTCG
ACGCAAAAGAGAGCGAAGACGCTGCGGTGGAGGAAGAGAGCGAGGAAGAG
GAGAAGGAAATGGAGGTGGCACGCACGGCCTTGGCTTCGTGGCGTGTGAG
CGACTTACCTGCAGAGCTGGCGAGGGCCGTGCAGACCCCTCCTCAGTTCC
GCGGATGGTGGGTCAGAAACGACGAGAAACAACAGCAACTACAGCAGCAC
GAGCATCAGCAAGGGGAAACCTCCCACAAAGACGCGCACGACCACGTGCG
GATCATCCTCGGCAAGGAGTTAGAAGGGAAAGCCTGGACGGCTTCAGACC
GCGAGGAATGGACGGGCCTCCTCTTGGGGGGTTCCGTCCTCTGGTCCTTC
TACCCTCCAGGGCAAGGGCTGCAAAACATGACTATGCCCGGAAAAGGCCA
TTGTTTGCTAGGGCCGTTGGAGTGGGTCCTTAGTACGTTGGATGCCTTTG
TCGATCATGAAGGAGTGTCGGATCCGGAGGAAGGGAGGATGGACCCCCCT
CCTTTGGAGTGCTGGCAGCGGCCAGGGGATGTGGTGTACGTACCCACGGG
GTGGAAGAGTATGAGGGTGCATGTAGGGGGGGGCGTGGTACTGGTGGAGG
GGGAGGGGAGGAGAGGCGATTCGATGGAGGATGAAGGGGAGGAAGGGAGG
GAGGAGAGGGTGTTGCGGGCTAGTCTGGCGACGCTGCAGCACCAGCCACG
GGATTTCGAAGCTCTGATAGCGGCAGGCAAAGCGTACGTGCGCCAAGCCT
CGAGGATTTTATCATCACCTGCAGAATCAGCAGGCGCAGCAGGCACAGCA
GGAGCAGGAGAGGAAACATCGCTGTTAAAAGAAGCTCTGTGGTGCTTCCG
CACTGCTGCTGTAGTCCGCCCCTGTGACCCTACCCCCCATCTCCATGCCG
CCCAAGTCCTTCTCACCATGGGGGGTACGAATGAGTATGAGCAGGCCAAG
GCGTTGATTCATACGGCGGAAGAAGAGTTTTTTACCGCGTCTTCCCCCAC
ATGTCCTTTCCCTTCCCACGTGCCGCACGGACGCGTGCTGGCTCTCCTGG
CAGAGGCCCGTTTAAGGTTTGCGCGTTTTTTCATTCAGGCAGGGGATGAG
GTGGAGGGACGACGGGCCCTTGCTGAGGTTTTAGCATTGCGACCTACCTA
CCTAGAGGCACATCAACTGTTGGTGACGATGTTGAGGGAGGTAGGGAATG
GGGAGGAGGCGCGAGAGGCAATGAGACGCGCTCTTGTTGCCCTGGGCCCG
CGCGGACAGGATGAAAGAGTTGTAAAAGCCTTTGAGGGATTGCTTACATC
GCAGACAGATGTAAAATATGACCGGACGAACTTAGAAAGATAAAAAGAAC
CAA

Coding sequence (CDS) from alignment at scaffold_26:316618..318970-

>mRNA_8603 ID=mRNA_8603|Name=jgi.p|Nanoce1779_2|210178|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_26:316618..318970- (Nannochloropsis oceanica)
ATGGCCCGGCAGACACGCCCCATCCACCATCGCCAGTCCCTGTGGGCATC
TTTGTCCTCCCTTCTCCTCTCATTGGGTTTTGCTGCCTTGGCCGTTGTCT
TTCACACCTTGATCATCATCCCCTGGCAAGCTGCACGGGCAGCCCGTCTG
AGAGGAGGGTGGGCCTCGGTATCGGTCGAGGAAGACTCGCCTTTCAACCG
TGCAGGATGTGATTTGCTACGGATTGACGCCGCCAGCCTCGACAAGGCAG
CGTTCGAACGTTTGTATCGTGGACAGCGTCCACTGGTTTTGACTTCAACG
TCATCCCCCCTTGTGTTTGCGAGCAGGCGTCAATGGCCTTTTGTCAATGG
CAAGGCGAAAGAGGGGGTGGAGGCATGGGAGAAGGAAGGGCTCTTGGCCC
GACATGGACAGAATTTGACGGTGCTTGTCGGAGGGATAGAGTTGTGGGAA
CAGGAGGAAGTGGGAGAGGAAGGAATGATGGGATTGGGTTTGGTGAAGAG
GAGGAGGAGAAGAAGAGAGAGCACATTGTCGGGTACCTGCGAGAGCACTA
GGAGCAGCAGTGGTGGTGGAATCCGCTTGCCACTTGCAGAGTATATCACC
AGATACTTCGACGCAAAAGAGAGCGAAGACGCTGCGGTGGAGGAAGAGAG
CGAGGAAGAGGAGAAGGAAATGGAGGTGGCACGCACGGCCTTGGCTTCGT
GGCGTGTGAGCGACTTACCTGCAGAGCTGGCGAGGGCCGTGCAGACCCCT
CCTCAGTTCCGCGGATGGTGGGTCAGAAACGACGAGAAACAACAGCAACT
ACAGCAGCACGAGCATCAGCAAGGGGAAACCTCCCACAAAGACGCGCACG
ACCACGTGCGGATCATCCTCGGCAAGGAGTTAGAAGGGAAAGCCTGGACG
GCTTCAGACCGCGAGGAATGGACGGGCCTCCTCTTGGGGGGTTCCGTCCT
CTGGTCCTTCTACCCTCCAGGGCAAGGGCTGCAAAACATGACTATGCCCG
GAAAAGGCCATTGTTTGCTAGGGCCGTTGGAGTGGGTCCTTAGTACGTTG
GATGCCTTTGTCGATCATGAAGGAGTGTCGGATCCGGAGGAAGGGAGGAT
GGACCCCCCTCCTTTGGAGTGCTGGCAGCGGCCAGGGGATGTGGTGTACG
TACCCACGGGGTGGAAGAGTATGAGGGTGCATGTAGGGGGGGGCGTGGTA
CTGGTGGAGGGGGAGGGGAGGAGAGGCGATTCGATGGAGGATGAAGGGGA
GGAAGGGAGGGAGGAGAGGGTGTTGCGGGCTAGTCTGGCGACGCTGCAGC
ACCAGCCACGGGATTTCGAAGCTCTGATAGCGGCAGGCAAAGCGTACGTG
CGCCAAGCCTCGAGGATTTTATCATCACCTGCAGAATCAGCAGGCGCAGC
AGGCACAGCAGGAGCAGGAGAGGAAACATCGCTGTTAAAAGAAGCTCTGT
GGTGCTTCCGCACTGCTGCTGTAGTCCGCCCCTGTGACCCTACCCCCCAT
CTCCATGCCGCCCAAGTCCTTCTCACCATGGGGGGTACGAATGAGTATGA
GCAGGCCAAGGCGTTGATTCATACGGCGGAAGAAGAGTTTTTTACCGCGT
CTTCCCCCACATGTCCTTTCCCTTCCCACGTGCCGCACGGACGCGTGCTG
GCTCTCCTGGCAGAGGCCCGTTTAAGGTTTGCGCGTTTTTTCATTCAGGC
AGGGGATGAGGTGGAGGGACGACGGGCCCTTGCTGAGGTTTTAGCATTGC
GACCTACCTACCTAGAGGCACATCAACTGTTGGTGACGATGTTGAGGGAG
GTAGGGAATGGGGAGGAGGCGCGAGAGGCAATGAGACGCGCTCTTGTTGC
CCTGGGCCCGCGCGGACAGGATGAAAGAGTTGTAAAAGCCTTTGAGGGAT
TGCTTACATCGCAGACAGATGTAAAATATGACCGGACGAACTTAGAAAGA
TAA

Synonyms

Publications