jgi.p|Nanoce1779_2|559771, mRNA_8602 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559771
Unique NamemRNA_8602
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length825
Alignment locationscaffold_26:314878..316063 -

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Properties
Property NameValue
TranscriptId559857
TrackFilteredModels2
ProteinId559771
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:314878..316063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559771gene_8602Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559771mRNA_8602-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8602CDS_8602Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8602 ID=mRNA_8602|Name=jgi.p|Nanoce1779_2|559771|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
CCACCTATCCACCGTTAGGGAGGAGAGCAACGTCCTGTTTCCTGATACTG
GAGGGGAAGGCAAACAGCAAACACGACCATCGACGACCCACACGACAGCA
TAGCAATTCGTCAGGGCACATTGATTCGCAGGCATCATGAAGCTTGTCAG
ATTTTTGATGAAGCTCAATAACGAGACGGTGACCATCGAGCTCAAGAACG
GCACCACCATCCAAGGCACAATTTCCGGCGTGGATGTCTCTATGAACACC
TACTTGAAGAACGTTAAGGTGACCCTAAAAGGCAAAAATCCCGTATCTTA
TGAATCGCTTTCCATCCGCGGGAACAATATCCGGTATTATATTCTACCTG
ATGCATTGAATTTGGACGCATTGTTGGTTGATGATGGTCCGAAGAGCAAA
ATCAAGCCAGGGGCACAAGCGGGAGGACGAGGGCGAGGACGGGGAGTAGG
AGGAAGGGGAGGTGGTGGAGGGAGGGGAAGGGGAGGGCCGGGGGGAGGGA
GGGGGCGAGGGCGATTTTAAGGGAGGAAGGGGAGGAGTGTGGGGGCCGTA
AGTGGTAAAGACTCGGATTTAGAGCATCATGGTGCCGGAGGAACACTAAA
AGAAAGAGGATGAGCAGGAAGAGGAGAGGACGTAAGTCACTCCATTTCCC
CCACGTCAAATGTAATTTTGTGCTTCGCGGCAGCAGCAGCATGTTGACGA
TGGGTGAGTGCATTTAGTGCCGGCACGGCACGTCCACTTACCACGATTAA
TAAGCTACAGCACGTGGAACAATCAAAGAAGCAGAAACACAAAAAGCAAC
GAATGGAAGTGGCATAGAAGCAGAC
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protein sequence of jgi.p|Nanoce1779_2|559771

>mRNA_8602-protein ID=mRNA_8602-protein|Name=jgi.p|Nanoce1779_2|559771|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGK
NPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPGAQAGGRGR
GRGVGGRGGGGGRGRGGPGGGRGRGRF*
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mRNA from alignment at scaffold_26:314878..316063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8602 ID=mRNA_8602|Name=jgi.p|Nanoce1779_2|559771|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at scaffold_26:314878..316063- (Nannochloropsis oceanica)
CCACCTATCCACCGTTAGGGAGGAGAGCAACGTCCTGTTTCCTGATACTG
GAGGGGAAGGCAAACAGCAAACACGACCATCGACGACCCACACGACAGCA
TAGCAATTCGTCAGGGCACATTGATTCGCAGGCATCATGAAGCTTGTCAG
GTACGTGTTTGACTGATAGCATGGGATGGGGAGGGGAAGAGAGGGTGGTA
GCAAATGGAGCGTGTGAGATAGGCGCGCATCTGTATGTCCGTCATAATCC
ACTTCCAGGGCTCCGTCTACCCACTTTCCTCATCCATCCCATTTCTATCA
CTGTGACTCATAGATTTTTGATGAAGCTCAATAACGAGACGGTGACCATC
GAGCTCAAGAACGGCACCACCATCCAAGGCACAATTTCCGGTATGTAGGT
TAGGGGGTTGAGTTGCGTCCCTTCCCTCGCTTTACCTAATTCTGTGTGTT
CAGAATGGCATCCAAAGCAGGCTTCGGTGATTAGTTTTAGGTCCATGCGC
AGTGTTTGAAGAGAAATGCTACCCTCGCCTTTATCTCTTTTGACATCTCC
CCTCTTTGCCTCCCTTCCTCCATCTCTCCGTCTCTTAGGCGTGGATGTCT
CTATGAACACCTACTTGAAGAACGTTAAGGTGACCCTAAAAGGCAAAAAT
CCCGTATCTTATGAATCGCTTTCCATCCGCGGGAACAATATCCGGTATTA
TATTCTACCTGATGCATTGAATTTGGACGCATTGTTGGTTGATGATGGTC
CGAAGAGCAAAATCAAGCCAGGGGCACAAGCGGGAGGACGAGGGCGAGGA
CGGGGAGTAGGAGGAAGGGGAGGTGGTGGAGGGAGGGGAAGGGGAGGGCC
GGGGGGAGGGAGGGGGCGAGGGCGATTTTAAGGGAGGAAGGGGAGGAGTG
TGGGGGCCGTAAGTGGTAAAGACTCGGATTTAGAGCATCATGGTGCCGGA
GGAACACTAAAAGAAAGAGGATGAGCAGGAAGAGGAGAGGACGTAAGTCA
CTCCATTTCCCCCACGTCAAATGTAATTTTGTGCTTCGCGGCAGCAGCAG
CATGTTGACGATGGGTGAGTGCATTTAGTGCCGGCACGGCACGTCCACTT
ACCACGATTAATAAGCTACAGCACGTGGAACAATCAAAGAAGCAGAAACA
CAAAAAGCAACGAATGGAAGTGGCATAGAAGCAGAC
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Coding sequence (CDS) from alignment at scaffold_26:314878..316063-

>mRNA_8602 ID=mRNA_8602|Name=jgi.p|Nanoce1779_2|559771|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_26:314878..316063- (Nannochloropsis oceanica)
GCGTGGATGTCTCTATGAACACCTACTTGAAGAACGTTAAGGTGACCCTA
AAAGGCAAAAATCCCGTATCTTATGAATCGCTTTCCATCCGCGGGAACAA
TATCCGGTATTATATTCTACCTGATGCATTGAATTTGGACGCATTGTTGG
TTGATGATGGTCCGAAGAGCAAAATCAAGCCAGGGGCACAAGCGGGAGGA
CGAGGGCGAGGACGGGGAGTAGGAGGAAGGGGAGGTGGTGGAGGGAGGGG
AAGGGGAGGGCCGGGGGGAGGGAGGGGGCGAGGGCGATTTTAAATTTTTG
ATGAAGCTCAATAACGAGACGGTGACCATCGAGCTCAAGAACGGCACCAC
CATCCAAGGCACAATTTCCGATGAAGCTTGTCAGGCGTGGATGTCTCTAT
GAACACCTACTTGAAGAACGTTAAGGTGACCCTAAAAGGCAAAAATCCCG
TATCTTATGAATCGCTTTCCATCCGCGGGAACAATATCCGGTATTATATT
CTACCTGATGCATTGAATTTGGACGCATTGTTGGTTGATGATGGTCCGAA
GAGCAAAATCAAGCCAGGGGCACAAGCGGGAGGACGAGGGCGAGGACGGG
GAGTAGGAGGAAGGGGAGGTGGTGGAGGGAGGGGAAGGGGAGGGCCGGGG
GGAGGGAGGGGGCGAGGGCGATTTTAAATTTTTGATGAAGCTCAATAACG
AGACGGTGACCATCGAGCTCAAGAACGGCACCACCATCCAAGGCACAATT
TCCGATGAAGCTTGTCAGGCGTGGATGTCTCTATGAACACCTACTTGAAG
AACGTTAAGGTGACCCTAAAAGGCAAAAATCCCGTATCTTATGAATCGCT
TTCCATCCGCGGGAACAATATCCGGTATTATATTCTACCTGATGCATTGA
ATTTGGACGCATTGTTGGTTGATGATGGTCCGAAGAGCAAAATCAAGCCA
GGGGCACAAGCGGGAGGACGAGGGCGAGGACGGGGAGTAGGAGGAAGGGG
AGGTGGTGGAGGGAGGGGAAGGGGAGGGCCGGGGGGAGGGAGGGGGCGAG
GGCGATTTTAAATTTTTGATGAAGCTCAATAACGAGACGGTGACCATCGA
GCTCAAGAACGGCACCACCATCCAAGGCACAATTTCCGATGAAGCTTGTC
AG
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Synonyms
Publications