jgi.p|Nanoce1779_2|532684, mRNA_8601 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532684
Unique NamemRNA_8601
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1188
Alignment locationscaffold_26:313396..314583 -

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Properties
Property NameValue
TranscriptId532770
TrackFilteredModels2
ProteinId532684
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:313396..314583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532684gene_8601Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8601CDS_8601Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532684mRNA_8601-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8601 ID=mRNA_8601|Name=jgi.p|Nanoce1779_2|532684|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGTCAGGGCCCTCTACTTCTTCCACCGCATCCTCCGTCCGTTCATCTTC
CTCCTCCTACGCCACATCTATATGCGGACTCACGGCTATCGAGCTAGAGC
GCTTGGAGAACATCAAGGCAAACCAAGCTGTCCTTGCCTCGGTGGGGTTA
GGGGGCACCCGACGACCCGGTGGTACCTTCCACGAGGACAACGACGAGGG
AGAAAGAACCCAAAAAAAAAAACAAAAGAAACAAAAACCTCCATCACGAC
CCACAACAGAGCCTTCCCGCCGCTCCTCCCGCAACCTCGGTCGAGATGCG
CCGGACTACAGAGAGGACGCAATAGCTCTCTCCAACCCTCCCTCCTCCTC
GTTCACTTCCTCTCGACATACCTGGAAGTCATCCAATAATGATGGCAAGG
GAGAAGGGTTAGGGGCGGGGGAGGAGTGGGACTCCACAACCATGGCAGAA
GCAGCAGCAGCCGCAGCAAGTCGTGTGAGTGCCACTCCTGGAAGCTCACG
CCTGAGGGATGCTGACGTGCAGAGTATGTTGAGGGAGTATTTGGGCAAGA
AAGTACCACACACAGGAAAGCAATGTGTGATGGATCTATTGACCCCCAAC
GCAGGAACAGAAGGAGGAGAAAGCGAGGGAGGGAGGGAGGGAGGGCCAGT
CAAATTTAGTAAATACGCAGGGGTGGTCGAATGGCGGAATTGTATGGTCT
TATGGGTCAACGTCGACGGGAATGATTATGAGAATCTCTGGTTGGAAGGT
GGGAGGAAACTGACGTGGTTTGCAGGGAGTAGGGTGAAGCCGGAGACGCC
GGTGATGGTGAGGTTGCTGGCGGCGGGGAGTGCGGGAGGGAGGAAGGATG
GGAGTGAAGGAGAGAACGGTGAAAAAGAAAAGGGAAAGGAAAGAGGGAAA
GGAGGAGAGGAGAGTTGGACGGAGGTACAGAAGGAGGATAAGGAGAGACA
GGAGGATGTTTTGCTGTTTTGTCGAAGCCAGGGCGGGCCGTATGTTTGCA
TGGGGAGGGTGTGGCATGTATGGTTTGACACCCGCACGCACCCGATCAAG
GTGTTGTGGATATTGAGGGATTGGGAAGAGATCTGGAGGAAGAAAGATGT
TATGGAGGTGATAGGGATTGGAAGGGAGAAAAAGGAGGAGGAGGAGGAGG
AGGAGTATTCAGAAGGAAAGGTGAAGAAGAAGGCATAA
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protein sequence of jgi.p|Nanoce1779_2|532684

>mRNA_8601-protein ID=mRNA_8601-protein|Name=jgi.p|Nanoce1779_2|532684|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MSGPSTSSTASSVRSSSSSYATSICGLTAIELERLENIKANQAVLASVGL
GGTRRPGGTFHEDNDEGERTQKKKQKKQKPPSRPTTEPSRRSSRNLGRDA
PDYREDAIALSNPPSSSFTSSRHTWKSSNNDGKGEGLGAGEEWDSTTMAE
AAAAAASRVSATPGSSRLRDADVQSMLREYLGKKVPHTGKQCVMDLLTPN
AGTEGGESEGGREGGPVKFSKYAGVVEWRNCMVLWVNVDGNDYENLWLEG
GRKLTWFAGSRVKPETPVMVRLLAAGSAGGRKDGSEGENGEKEKGKERGK
GGEESWTEVQKEDKERQEDVLLFCRSQGGPYVCMGRVWHVWFDTRTHPIK
VLWILRDWEEIWRKKDVMEVIGIGREKKEEEEEEEYSEGKVKKKA*
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mRNA from alignment at scaffold_26:313396..314583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8601 ID=mRNA_8601|Name=jgi.p|Nanoce1779_2|532684|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at scaffold_26:313396..314583- (Nannochloropsis oceanica)
ATGTCAGGGCCCTCTACTTCTTCCACCGCATCCTCCGTCCGTTCATCTTC
CTCCTCCTACGCCACATCTATATGCGGACTCACGGCTATCGAGCTAGAGC
GCTTGGAGAACATCAAGGCAAACCAAGCTGTCCTTGCCTCGGTGGGGTTA
GGGGGCACCCGACGACCCGGTGGTACCTTCCACGAGGACAACGACGAGGG
AGAAAGAACCCAAAAAAAAAAACAAAAGAAACAAAAACCTCCATCACGAC
CCACAACAGAGCCTTCCCGCCGCTCCTCCCGCAACCTCGGTCGAGATGCG
CCGGACTACAGAGAGGACGCAATAGCTCTCTCCAACCCTCCCTCCTCCTC
GTTCACTTCCTCTCGACATACCTGGAAGTCATCCAATAATGATGGCAAGG
GAGAAGGGTTAGGGGCGGGGGAGGAGTGGGACTCCACAACCATGGCAGAA
GCAGCAGCAGCCGCAGCAAGTCGTGTGAGTGCCACTCCTGGAAGCTCACG
CCTGAGGGATGCTGACGTGCAGAGTATGTTGAGGGAGTATTTGGGCAAGA
AAGTACCACACACAGGAAAGCAATGTGTGATGGATCTATTGACCCCCAAC
GCAGGAACAGAAGGAGGAGAAAGCGAGGGAGGGAGGGAGGGAGGGCCAGT
CAAATTTAGTAAATACGCAGGGGTGGTCGAATGGCGGAATTGTATGGTCT
TATGGGTCAACGTCGACGGGAATGATTATGAGAATCTCTGGTTGGAAGGT
GGGAGGAAACTGACGTGGTTTGCAGGGAGTAGGGTGAAGCCGGAGACGCC
GGTGATGGTGAGGTTGCTGGCGGCGGGGAGTGCGGGAGGGAGGAAGGATG
GGAGTGAAGGAGAGAACGGTGAAAAAGAAAAGGGAAAGGAAAGAGGGAAA
GGAGGAGAGGAGAGTTGGACGGAGGTACAGAAGGAGGATAAGGAGAGACA
GGAGGATGTTTTGCTGTTTTGTCGAAGCCAGGGCGGGCCGTATGTTTGCA
TGGGGAGGGTGTGGCATGTATGGTTTGACACCCGCACGCACCCGATCAAG
GTGTTGTGGATATTGAGGGATTGGGAAGAGATCTGGAGGAAGAAAGATGT
TATGGAGGTGATAGGGATTGGAAGGGAGAAAAAGGAGGAGGAGGAGGAGG
AGGAGTATTCAGAAGGAAAGGTGAAGAAGAAGGCATAA
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Coding sequence (CDS) from alignment at scaffold_26:313396..314583-

>mRNA_8601 ID=mRNA_8601|Name=jgi.p|Nanoce1779_2|532684|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_26:313396..314583- (Nannochloropsis oceanica)
ATGTCAGGGCCCTCTACTTCTTCCACCGCATCCTCCGTCCGTTCATCTTC
CTCCTCCTACGCCACATCTATATGCGGACTCACGGCTATCGAGCTAGAGC
GCTTGGAGAACATCAAGGCAAACCAAGCTGTCCTTGCCTCGGTGGGGTTA
GGGGGCACCCGACGACCCGGTGGTACCTTCCACGAGGACAACGACGAGGG
AGAAAGAACCCAAAAAAAAAAACAAAAGAAACAAAAACCTCCATCACGAC
CCACAACAGAGCCTTCCCGCCGCTCCTCCCGCAACCTCGGTCGAGATGCG
CCGGACTACAGAGAGGACGCAATAGCTCTCTCCAACCCTCCCTCCTCCTC
GTTCACTTCCTCTCGACATACCTGGAAGTCATCCAATAATGATGGCAAGG
GAGAAGGGTTAGGGGCGGGGGAGGAGTGGGACTCCACAACCATGGCAGAA
GCAGCAGCAGCCGCAGCAAGTCGTGTGAGTGCCACTCCTGGAAGCTCACG
CCTGAGGGATGCTGACGTGCAGAGTATGTTGAGGGAGTATTTGGGCAAGA
AAGTACCACACACAGGAAAGCAATGTGTGATGGATCTATTGACCCCCAAC
GCAGGAACAGAAGGAGGAGAAAGCGAGGGAGGGAGGGAGGGAGGGCCAGT
CAAATTTAGTAAATACGCAGGGGTGGTCGAATGGCGGAATTGTATGGTCT
TATGGGTCAACGTCGACGGGAATGATTATGAGAATCTCTGGTTGGAAGGT
GGGAGGAAACTGACGTGGTTTGCAGGGAGTAGGGTGAAGCCGGAGACGCC
GGTGATGGTGAGGTTGCTGGCGGCGGGGAGTGCGGGAGGGAGGAAGGATG
GGAGTGAAGGAGAGAACGGTGAAAAAGAAAAGGGAAAGGAAAGAGGGAAA
GGAGGAGAGGAGAGTTGGACGGAGGTACAGAAGGAGGATAAGGAGAGACA
GGAGGATGTTTTGCTGTTTTGTCGAAGCCAGGGCGGGCCGTATGTTTGCA
TGGGGAGGGTGTGGCATGTATGGTTTGACACCCGCACGCACCCGATCAAG
GTGTTGTGGATATTGAGGGATTGGGAAGAGATCTGGAGGAAGAAAGATGT
TATGGAGGTGATAGGGATTGGAAGGGAGAAAAAGGAGGAGGAGGAGGAGG
AGGAGTATTCAGAAGGAAAGGTGAAGAAGAAGGCATAA
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Synonyms
Publications