jgi.p|Nanoce1779_2|603299, mRNA_8600 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603299
Unique NamemRNA_8600
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1075
Alignment locationscaffold_26:312200..313274 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603385
TrackFilteredModels2
ProteinId603299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:312200..313274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603299gene_8600Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603299mRNA_8600-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8600CDS_8600Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8600 ID=mRNA_8600|Name=jgi.p|Nanoce1779_2|603299|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp
AGATTAGGTGGAATGCTTATCAGACTGCCTCTCCCCCTCGTCCTTCATCT
CCTTGTCCTGCCAGTCGTCATCGTCCGTGCATACCAACCACCGCCCGGGC
CCGGCCACCACAGCACACCAAAGCCTCGACACCAGAGCCCGCCTCGCCGC
CCCCAGTACCAGCCAAGCAGCAGCAGCCGCCAAGACCTCATCTCCACTGC
CACGACCGCTCTCGCTGGTTGCTCCTCCCTCCTCTTTCTCGGCTCATCCC
GTACATCTCCTGCCCATGCTACGGATGCCCGCGAGGCCATCTCCAAAGTT
ATCTCCAAAGTCCCCGGGTATGGGGCTCCTGATATATTGTATCCCTCCTT
TTTTGCTGGCGAGTGGAAAATGACAAGGGAAGTGGTCGGCTTAATCATTC
CCCCTGAAGAAGCAGGCAAAGTCGACTCGCAGGATTTGGCGCAAGCCAGG
GCGCAGCAAGGCGAGAAACTTGTCTTCACCATCCGCTTTCTACCCTACAA
TGAGGGTGAGGAAGGTGCTATTGGTGGTATCTCTGCACCTCAAGCTCCTC
GGGCCGATGTGGGAAACGCGGACAAGGCCGCAAGAATGGTAATTGCTGAT
AGGGGGTTCAATGAAGAGAATTTATGGAGGGCCCGTTTAGCCCTAGCGGG
AAAGAGTGAGCTGTACCAGGAAGGGGTGTCCAGTCGCTGGGAGCGAACAA
ATCCCAATGTTCTTACAGTATCCTTTCCGGATGGTGTGGTTAGAGAGGTG
AAAGTGACGAAGAGGTCGTTTGAATCCCCCGGAGAGGATGCCTTCGGGTC
TTCAGAATTTTGTCGCGTGGCTGACGCGGCGGCTGACATGGGGGTGGCGT
CTGTTCCCCGGTTGAGTGCTTTGAGGGTGCTGAGGAGGTGGAAGAGGAGA
GGAGGAGGAGAGGAGGGAGGAATTGAGGGTTTGGAGCTGGTGAAATACTA
TCCAACTGTGAGTTTAAGTGCGGATCCACCGGCGGTGATGACCATTAAAG
CACGGTTGACGCTGGAAAGGATTAGATAAGAGAATAATGAGGCTGATAAA
CAGCAGAGAGTGTGAGACAATCGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|603299

>mRNA_8600-protein ID=mRNA_8600-protein|Name=jgi.p|Nanoce1779_2|603299|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MLIRLPLPLVLHLLVLPVVIVRAYQPPPGPGHHSTPKPRHQSPPRRPQYQ
PSSSSRQDLISTATTALAGCSSLLFLGSSRTSPAHATDAREAISKVISKV
PGYGAPDILYPSFFAGEWKMTREVVGLIIPPEEAGKVDSQDLAQARAQQG
EKLVFTIRFLPYNEGEEGAIGGISAPQAPRADVGNADKAARMVIADRGFN
EENLWRARLALAGKSELYQEGVSSRWERTNPNVLTVSFPDGVVREVKVTK
RSFESPGEDAFGSSEFCRVADAAADMGVASVPRLSALRVLRRWKRRGGGE
EGGIEGLELVKYYPTVSLSADPPAVMTIKARLTLERIR*
back to top

mRNA from alignment at scaffold_26:312200..313274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8600 ID=mRNA_8600|Name=jgi.p|Nanoce1779_2|603299|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp|location=Sequence derived from alignment at scaffold_26:312200..313274+ (Nannochloropsis oceanica)
AGATTAGGTGGAATGCTTATCAGACTGCCTCTCCCCCTCGTCCTTCATCT
CCTTGTCCTGCCAGTCGTCATCGTCCGTGCATACCAACCACCGCCCGGGC
CCGGCCACCACAGCACACCAAAGCCTCGACACCAGAGCCCGCCTCGCCGC
CCCCAGTACCAGCCAAGCAGCAGCAGCCGCCAAGACCTCATCTCCACTGC
CACGACCGCTCTCGCTGGTTGCTCCTCCCTCCTCTTTCTCGGCTCATCCC
GTACATCTCCTGCCCATGCTACGGATGCCCGCGAGGCCATCTCCAAAGTT
ATCTCCAAAGTCCCCGGGTATGGGGCTCCTGATATATTGTATCCCTCCTT
TTTTGCTGGCGAGTGGAAAATGACAAGGGAAGTGGTCGGCTTAATCATTC
CCCCTGAAGAAGCAGGCAAAGTCGACTCGCAGGATTTGGCGCAAGCCAGG
GCGCAGCAAGGCGAGAAACTTGTCTTCACCATCCGCTTTCTACCCTACAA
TGAGGGTGAGGAAGGTGCTATTGGTGGTATCTCTGCACCTCAAGCTCCTC
GGGCCGATGTGGGAAACGCGGACAAGGCCGCAAGAATGGTAATTGCTGAT
AGGGGGTTCAATGAAGAGAATTTATGGAGGGCCCGTTTAGCCCTAGCGGG
AAAGAGTGAGCTGTACCAGGAAGGGGTGTCCAGTCGCTGGGAGCGAACAA
ATCCCAATGTTCTTACAGTATCCTTTCCGGATGGTGTGGTTAGAGAGGTG
AAAGTGACGAAGAGGTCGTTTGAATCCCCCGGAGAGGATGCCTTCGGGTC
TTCAGAATTTTGTCGCGTGGCTGACGCGGCGGCTGACATGGGGGTGGCGT
CTGTTCCCCGGTTGAGTGCTTTGAGGGTGCTGAGGAGGTGGAAGAGGAGA
GGAGGAGGAGAGGAGGGAGGAATTGAGGGTTTGGAGCTGGTGAAATACTA
TCCAACTGTGAGTTTAAGTGCGGATCCACCGGCGGTGATGACCATTAAAG
CACGGTTGACGCTGGAAAGGATTAGATAAGAGAATAATGAGGCTGATAAA
CAGCAGAGAGTGTGAGACAATCGGG
back to top

Coding sequence (CDS) from alignment at scaffold_26:312200..313274+

>mRNA_8600 ID=mRNA_8600|Name=jgi.p|Nanoce1779_2|603299|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_26:312200..313274+ (Nannochloropsis oceanica)
ATGCTTATCAGACTGCCTCTCCCCCTCGTCCTTCATCTCCTTGTCCTGCC
AGTCGTCATCGTCCGTGCATACCAACCACCGCCCGGGCCCGGCCACCACA
GCACACCAAAGCCTCGACACCAGAGCCCGCCTCGCCGCCCCCAGTACCAG
CCAAGCAGCAGCAGCCGCCAAGACCTCATCTCCACTGCCACGACCGCTCT
CGCTGGTTGCTCCTCCCTCCTCTTTCTCGGCTCATCCCGTACATCTCCTG
CCCATGCTACGGATGCCCGCGAGGCCATCTCCAAAGTTATCTCCAAAGTC
CCCGGGTATGGGGCTCCTGATATATTGTATCCCTCCTTTTTTGCTGGCGA
GTGGAAAATGACAAGGGAAGTGGTCGGCTTAATCATTCCCCCTGAAGAAG
CAGGCAAAGTCGACTCGCAGGATTTGGCGCAAGCCAGGGCGCAGCAAGGC
GAGAAACTTGTCTTCACCATCCGCTTTCTACCCTACAATGAGGGTGAGGA
AGGTGCTATTGGTGGTATCTCTGCACCTCAAGCTCCTCGGGCCGATGTGG
GAAACGCGGACAAGGCCGCAAGAATGGTAATTGCTGATAGGGGGTTCAAT
GAAGAGAATTTATGGAGGGCCCGTTTAGCCCTAGCGGGAAAGAGTGAGCT
GTACCAGGAAGGGGTGTCCAGTCGCTGGGAGCGAACAAATCCCAATGTTC
TTACAGTATCCTTTCCGGATGGTGTGGTTAGAGAGGTGAAAGTGACGAAG
AGGTCGTTTGAATCCCCCGGAGAGGATGCCTTCGGGTCTTCAGAATTTTG
TCGCGTGGCTGACGCGGCGGCTGACATGGGGGTGGCGTCTGTTCCCCGGT
TGAGTGCTTTGAGGGTGCTGAGGAGGTGGAAGAGGAGAGGAGGAGGAGAG
GAGGGAGGAATTGAGGGTTTGGAGCTGGTGAAATACTATCCAACTGTGAG
TTTAAGTGCGGATCCACCGGCGGTGATGACCATTAAAGCACGGTTGACGC
TGGAAAGGATTAGATAA
back to top
Synonyms
Publications