jgi.p|Nanoce1779_2|622439, mRNA_86 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622439
Unique Name	mRNA_86
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2031
Alignment location	scaffold_3:231264..233369 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	622525
Track	FilteredModels2
ProteinId	622439

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:231264..233369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622439	gene_86	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622439	mRNA_86-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_86	CDS_86	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:231264..233369+
coding sequence from alignment at scaffold_3:231264..233369+

mRNA sequence

>mRNA_86 ID=mRNA_86|Name=jgi.p|Nanoce1779_2|622439|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp
ATGTCTGTGTCGAATTCCGGCACCAGCAGAACCAGCGGCGATGCCTCCAC
CACGACCGCCCGTCCTGCCGGCCTGGAGAGTAATTGGGCCATCCTTTCCA
CTGCGGAACAAGCCTTGGCCGAGCTCCTGCTCAAGGCCGGACAAGCTCAT
CTCTTTGATGGGTGGGATACCGCAGGGACAAACGACGCGGAAAAGCATGC
CTTTTTCGCCCAAGTCCAGAGGCTACACGATACATACCCGGATGGCCTGG
CTGCGTACGTAGATCGAGCGAAAGCGCTATTGGCCGAGTCGGCCACTGGA
GTGAACTCGCTCGATGGATGGACGCCCGCAGTACCAGAAGGTGCAATTCT
GGAGCCGGGTTCGGCCAAGTATTGCGAGTGGGAGACTGCTGGGAAGGACG
AATTAAAAGCGACAGGCTTTGTGTTGGTGGCGGGGGGGTTGGGAGAGCGG
CTTGGGTTCAGTGGGATAAAGGTGGCGTTGCCGACGGAGATAACGACGAA
GACGACGTATATGGAGTTTTATTGCAAGTATTTGCTGGCGGTGGGTGCTA
AGAATGGAGGAAAGATCCCGCCGTTGGCAATCATGGTGTCGGATGACACG
CATGATCGGACGTTGGCCTTGCTTGAATCGAATGATTATTTTGGGTATCC
CAAGGAGGCATTAACGTTAATGAAGCAAGAAAAGGTGGCGGCCTTGGCCG
ATAATGACGCACGGATCGCTCGGGCCGCGAATGCGGAGGGAAGGGGTGAT
GGACGCTATGGCATTGATTGTAAGCCCCACGGACACGGGGATGTCCACTC
CCTCCTGCACCGCACGGGTGTAGCCAAACGCTGGGAGGTGGAGGGTCTGA
AATGGGTGGTATTTTTCCAGGATACGAATGCCCTCGCATTTCTGTCTTTG
GCGGCTGCCCTTGGGGTGAGCCAAAAGTTGGGATTGGAGGTCAACTCAAT
CGCGATTCCTCGGGTGCCAAAGCAAGCCATCGGGGCTATAACTCGCCTCA
CCCATACGACGGAGAAAGAGACTAAAGTTATGATCGTCAACGTGGAATAC
AACCAGCTCGACCCCCTTCTCCGCGCGTCCGGTTCTCCCGAGGGGGACGT
CGCAGACCCCTCCACAGGCTATAGCCCCTACCCTGGAAACATCAACCAGT
TGATCTTCGCCCTCTCACCCTACGTTGCCACCCTCAACAAGACCCACGGC
GTGATGGGCGAGTTCGTCAACCCCAAGTATGCGGATGCTGCCCGTTCTGT
CTTCAAGAAGCCCACTCGGCTCGAGTGCATGATGCAGGATTACCCCAAAA
TGCTGCCGCTCGAGGCCAAGGTGGGTTTCACCTCCCTCCCTGCCTGGTTT
TCTTTCTCGCCTGTCAAGAACAATGCTCCCGATGCGGCGAAAGCTGCTCA
AGCAGGAACTCCTCCTGGGAGTGCGTCCACAGGAGAAGCTGATCAGTACT
ATGCCGTTGCGGAACAGCTGCGATTGCTGGGATGCAAGGTGGGTAAGGCA
CCCGAGGCGACCTACACGGGCATTCCAGTCAGCCTTGGCCCCCGGGTGGT
AATTGACCCTTCGGTTGCTTTGAACTTTTCAGAGATGAAGAAGGTTTTTC
CTTCTCCCGACAGGGTTACTATTGGGGGGGAGGCAACTTTGGTGTTGCAG
GGGCCGGGGGAGGTGGAGGTGCAGAGCTTGGAGCTGGAGGGGGCTTTGGT
CCTGTCTGTGGGAAAGGGGACGACTGTGATAGTGAAAGATATGGTAGTGA
AGAATAAGGGTCATGTCGTTGTCCCGGTTTCTGGAAAGGACGAGCCAGAT
GAGGTGCTACTCATGCGTGGGTACCGGTTGGAGAAGCAGGACGAGCTTCG
TGTCCAAGCCCCGGCGAATGCGGGCCGCATGGTTCTGGCCAGAGAGGGAA
ATCTGGCCGCCCACGTCACTGCGCCAGCGCCCACGCCAGCCACGGATGTG
GAGTTGGAAGATAAGGCAGTCAGTGGCAATTGTCTGGCACGGGCCTTTGA
TTGCTTCAAGAAGAAGCCTGCGAGGGCATAA

protein sequence of jgi.p|Nanoce1779_2|622439

>mRNA_86-protein ID=mRNA_86-protein|Name=jgi.p|Nanoce1779_2|622439|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp
MSVSNSGTSRTSGDASTTTARPAGLESNWAILSTAEQALAELLLKAGQAH
LFDGWDTAGTNDAEKHAFFAQVQRLHDTYPDGLAAYVDRAKALLAESATG
VNSLDGWTPAVPEGAILEPGSAKYCEWETAGKDELKATGFVLVAGGLGER
LGFSGIKVALPTEITTKTTYMEFYCKYLLAVGAKNGGKIPPLAIMVSDDT
HDRTLALLESNDYFGYPKEALTLMKQEKVAALADNDARIARAANAEGRGD
GRYGIDCKPHGHGDVHSLLHRTGVAKRWEVEGLKWVVFFQDTNALAFLSL
AAALGVSQKLGLEVNSIAIPRVPKQAIGAITRLTHTTEKETKVMIVNVEY
NQLDPLLRASGSPEGDVADPSTGYSPYPGNINQLIFALSPYVATLNKTHG
VMGEFVNPKYADAARSVFKKPTRLECMMQDYPKMLPLEAKVGFTSLPAWF
SFSPVKNNAPDAAKAAQAGTPPGSASTGEADQYYAVAEQLRLLGCKVGKA
PEATYTGIPVSLGPRVVIDPSVALNFSEMKKVFPSPDRVTIGGEATLVLQ
GPGEVEVQSLELEGALVLSVGKGTTVIVKDMVVKNKGHVVVPVSGKDEPD
EVLLMRGYRLEKQDELRVQAPANAGRMVLAREGNLAAHVTAPAPTPATDV
ELEDKAVSGNCLARAFDCFKKKPARA*

mRNA from alignment at scaffold_3:231264..233369+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_86 ID=mRNA_86|Name=jgi.p|Nanoce1779_2|622439|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp|location=Sequence derived from alignment at scaffold_3:231264..233369+ (Nannochloropsis oceanica)
ATGTCTGTGTCGAATTCCGGCACCAGCAGAACCAGCGGCGATGCCTCCAC
CACGACCGCCCGTCCTGCCGGCCTGGAGAGTAATTGGGCCATCCTTTCCA
CTGCGGAACAAGCCTTGGCCGAGCTCCTGCTCAAGGCCGGACAAGCTCAT
CTCTTTGATGGGTGGGATACCGCAGGGACAAACGACGCGGAAAAGCATGC
CTTTTTCGCCCAAGTCCAGAGGCTACACGATACATACCCGGATGGCCTGG
CTGCGTACGTAGATCGAGCGAAAGCGCTATTGGCCGAGTCGGCCACTGGA
GTGAACTCGCTCGATGGATGGACGCCCGCAGTACCAGAAGGTGCAATTCT
GGAGCCGGGTTCGGCCAAGTATTGCGAGTGGGAGACTGCTGGGAAGGACG
AATTAAAAGCGACAGGCTTTGTGTTGGTGGCGGGGGGGTTGGGAGAGCGG
CTTGGGTTCAGTGGGATAAAGGTGGCGTTGCCGACGGAGATAACGACGAA
GACGACGTATATGGAGTTTTATTGCAAGTATTTGCTGGCGGTGGGTGCTA
AGAATGGAGGAAAGATCCCGCCGTTGGCAATCATGGTGTCGGATGACACG
CATGATCGGACGTTGGCCTTGCTTGAATCGAATGATTATTTTGGGTATCC
CAAGGAGGCATTAACGTTAATGAAGCAAGAAAAGGTGGCGGCCTTGGCCG
ATAATGACGCACGGATCGCTCGGGCCGCGAATGCGGAGGGAAGGGGTGAT
GGACGCTATGGCATTGATTGTAAGCCCCACGGACACGGGGATGTCCACTC
CCTCCTGCACCGCACGGGTGTAGCCAAACGCTGGGAGGTGGAGGGTCTGA
AATGGGTGGTATTTTTCCAGGATACGAATGCCCTCGCATTTCTGTCTTTG
GCGGCTGCCCTTGGGGTGAGCCAAAAGTTGGGATTGGAGGTCAACTCAAT
CGCGATTCCTCGGGTGCCAAAGCAAGCCATCGGGGCTATAACTCGCCTCA
CCCATACGACGGAGAAAGAGACTAAAGTTATGATCGTCAACGTGGAATAC
AACCAGCTCGACCCCCTTCTCCGCGCGTCCGGTTCTCCCGAGGGGGACGT
CGCAGACCCCTCCACAGGCTATAGCCCCTACCCTGGAAACATCAACCAGT
TGATCTTCGCCCTCTCACCCTACGTTGCCACCCTCAACAAGACCCACGGC
GTGATGGGCGAGTTCGTCAACCCCAAGTATGCGGATGCTGCCCGTTCTGT
CTTCAAGAAGCCCACTCGGCTCGAGTGCATGATGCAGGATTACCCCAAAA
TGCTGCCGCTCGAGGCCAAGGTGGGTTTCACCTCCCTCCCTGCCTGGTTT
TCTTTCTCGCCTGTCAAGAACAATGCTCCCGATGCGGCGAAAGCTGCTCA
AGCAGGAACTCCTCCTGGGAGTGCGTCCACAGGAGAAGCTGATCAGTACT
ATGCCGTTGCGGAACAGCTGCGATTGCTGGGATGCAAGGTGGGTAAGGCA
CCCGAGGCGACCTACACGGGCATTCCAGTCAGCCTTGGCCCCCGGGTGGT
AATTGACCCTTCGGTTGCTTTGAACTTTTCAGAGATGAAGAAGGTTTTTC
CTTCTCCCGACAGGGTTACTATTGGGGGGGAGGCAACTTTGGTGTTGCAG
GGGCCGGGGGAGGTGGAGGTGCAGAGCTTGGAGCTGGAGGGGGCTTTGGT
CCTGTCTGTGGGAAAGGGGACGACTGTGATAGTGAAAGATATGGTAGTGA
AGAATAAGGGTCATGTCGTTGTCCCGGTTTCTGGAAAGGACGAGCCAGAT
GAGGTGCTACTCATGCGTGGGTACCGGTTGGAGAAGCAGGACGAGCTTCG
TGTCCAAGCCCCGGCGAATGCGGGCCGCATGGTTCTGGCCAGAGAGGGAA
ATCTGGTACCCGAGGCAGAGTCGCTGCCTGTCAAGATAGCAGCAGTATCG
GCGATTCCGACAAAGCCTGTCAACCCCCAGGCCGCCCACGTCACTGCGCC
AGCGCCCACGCCAGCCACGGATGTGGAGTTGGAAGATAAGGCAGTCAGTG
GCAATTGTCTGGCACGGGCCTTTGATTGCTTCAAGAAGAAGCCTGCGAGG
GCATAA

Coding sequence (CDS) from alignment at scaffold_3:231264..233369+

>mRNA_86 ID=mRNA_86|Name=jgi.p|Nanoce1779_2|622439|organism=Nannochloropsis oceanica|type=CDS|length=4062bp|location=Sequence derived from alignment at scaffold_3:231264..233369+ (Nannochloropsis oceanica)
ATGTCTGTGTCGAATTCCGGCACCAGCAGAACCAGCGGCGATGCCTCCAC
CACGACCGCCCGTCCTGCCGGCCTGGAGAGTAATTGGGCCATCCTTTCCA
CTGCGGAACAAGCCTTGGCCGAGCTCCTGCTCAAGGCCGGACAAGCTCAT
CTCTTTGATGGGTGGGATACCGCAGGGACAAACGACGCGGAAAAGCATGC
CTTTTTCGCCCAAGTCCAGAGGCTACACGATACATACCCGGATGGCCTGG
CTGCGTACGTAGATCGAGCGAAAGCGCTATTGGCCGAGTCGGCCACTGGA
GTGAACTCGCTCGATGGATGGACGCCCGCAGTACCAGAAGGTGCAATTCT
GGAGCCGGGTTCGGCCAAGTATTGCGAGTGGGAGACTGCTGGGAAGGACG
AATTAAAAGCGACAGGCTTTGTGTTGGTGGCGGGGGGGTTGGGAGAGCGG
CTTGGGTTCAGTGGGATAAAGGTGGCGTTGCCGACGGAGATAACGACGAA
GACGACGTATATGGAGTTTTATTGCAAGTATTTGCTGGCGGTGGGTGCTA
AGAATGGAGGAAAGATCCCGCCGTTGGCAATCATGGTGTCGGATGACACG
CATGATCGGACGTTGGCCTTGCTTGAATCGAATGATTATTTTGGGTATCC
CAAGGAGGCATTAACGTTAATGAAGCAAGAAAAGGTGGCGGCCTTGGCCG
ATAATGACGCACGGATCGCTCGGGCCGCGAATGCGGAGGGAAGGGGTGAT
GGACGCTATGGCATTGATTGTAAGCCCCACGGACACGGGGATGTCCACTC
CCTCCTGCACCGCACGGGTGTAGCCAAACGCTGGGAGGTGGAGGGTCTGA
AATGGGTGGTATTTTTCCAGGATACGAATGCCCTCGCATTTCTGTCTTTG
GCGGCTGCCCTTGGGGTGAGCCAAAAGTTGGGATTGGAGGTCAACTCAAT
CGCGATTCCTCGGGTGCCAAAGCAAGCCATCGGGGCTATAACTCGCCTCA
CCCATACGACGGAGAAAGAGACTAAAGTTATGATCGTCAACGTGGAATAC
AACCAGCTCGACCCCCTTCTCCGCGCGTCCGGTTCTCCCGAGGGGGACGT
CGCAGACCCCTCCACAGGCTATAGCCCCTACCCTGGAAACATCAACCAGT
TGATCTTCGCCCTCTCACCCTACGTTGCCACCCTCAACAAGACCCACGGC
GTGATGGGCGAGTTCGTCAACCCCAAGTATGCGGATGCTGCCCGTTCTGT
CTTCAAGAAGCCCACTCGGCTCGAGTGCATGATGCAGGATTACCCCAAAA
TGCTGCCGCTCGAGGCCAAGGTGGGTTTCACCTCCCTCCCTGCCTGGTTT
TCTTTCTCGCCTGTCAAGAACAATGCTCCCGATGCGGCGAAAGCTGCTCA
AGCAGGAACTCCTCCTGGGAGTGCGTCCACAGGAGAAGCTGATCAGTACT
ATGCCGTTGCGGAACAGCTGCGATTGCTGGGATGCAAGGTGGGTAAGGCA
CCCGAGGCGACCTACACGGGCATTCCAGTCAGCCTTGGCCCCCGGGTGGT
AATTGACCCTTCGGTTGCTTTGAACTTTTCAGAGATGAAGAAGGTTTTTC
CTTCTCCCGACAGGGTTACTATTGGGGGGGAGGCAACTTTGGTGTTGCAG
GGGCCGGGGGAGGTGGAGGTGCAGAGCTTGGAGCTGGAGGGGGCTTTGGT
CCTGTCTGTGGGAAAGGGGACGACTGTGATAGTGAAAGATATGGTAGTGA
AGAATAAGGGTCATGTCGTTGTCCCGGTTTCTGGAAAGGACGAGCCAGAT
GAGGTGCTACTCATGCGTGGGTACCGGTTGGAGAAGCAGGACGAGCTTCG
TGTCCAAGCCCCGGCGAATGCGGGCCGCATGGTTCTGGCCAGAGAGGGAA
ATCTGGCCGCCCACGTCACTGCGCCAGCGCCCACGCCAGCCACGGATGTG
GAGTTGGAAGATAAGGCAGTCAGTGGCAATTGTCTGGCACGGGCCTTTGA
TTGCTTCAAGAAGAAGCCTGCGAGGGCATAAATGTCTGTGTCGAATTCCG
GCACCAGCAGAACCAGCGGCGATGCCTCCACCACGACCGCCCGTCCTGCC
GGCCTGGAGAGTAATTGGGCCATCCTTTCCACTGCGGAACAAGCCTTGGC
CGAGCTCCTGCTCAAGGCCGGACAAGCTCATCTCTTTGATGGGTGGGATA
CCGCAGGGACAAACGACGCGGAAAAGCATGCCTTTTTCGCCCAAGTCCAG
AGGCTACACGATACATACCCGGATGGCCTGGCTGCGTACGTAGATCGAGC
GAAAGCGCTATTGGCCGAGTCGGCCACTGGAGTGAACTCGCTCGATGGAT
GGACGCCCGCAGTACCAGAAGGTGCAATTCTGGAGCCGGGTTCGGCCAAG
TATTGCGAGTGGGAGACTGCTGGGAAGGACGAATTAAAAGCGACAGGCTT
TGTGTTGGTGGCGGGGGGGTTGGGAGAGCGGCTTGGGTTCAGTGGGATAA
AGGTGGCGTTGCCGACGGAGATAACGACGAAGACGACGTATATGGAGTTT
TATTGCAAGTATTTGCTGGCGGTGGGTGCTAAGAATGGAGGAAAGATCCC
GCCGTTGGCAATCATGGTGTCGGATGACACGCATGATCGGACGTTGGCCT
TGCTTGAATCGAATGATTATTTTGGGTATCCCAAGGAGGCATTAACGTTA
ATGAAGCAAGAAAAGGTGGCGGCCTTGGCCGATAATGACGCACGGATCGC
TCGGGCCGCGAATGCGGAGGGAAGGGGTGATGGACGCTATGGCATTGATT
GTAAGCCCCACGGACACGGGGATGTCCACTCCCTCCTGCACCGCACGGGT
GTAGCCAAACGCTGGGAGGTGGAGGGTCTGAAATGGGTGGTATTTTTCCA
GGATACGAATGCCCTCGCATTTCTGTCTTTGGCGGCTGCCCTTGGGGTGA
GCCAAAAGTTGGGATTGGAGGTCAACTCAATCGCGATTCCTCGGGTGCCA
AAGCAAGCCATCGGGGCTATAACTCGCCTCACCCATACGACGGAGAAAGA
GACTAAAGTTATGATCGTCAACGTGGAATACAACCAGCTCGACCCCCTTC
TCCGCGCGTCCGGTTCTCCCGAGGGGGACGTCGCAGACCCCTCCACAGGC
TATAGCCCCTACCCTGGAAACATCAACCAGTTGATCTTCGCCCTCTCACC
CTACGTTGCCACCCTCAACAAGACCCACGGCGTGATGGGCGAGTTCGTCA
ACCCCAAGTATGCGGATGCTGCCCGTTCTGTCTTCAAGAAGCCCACTCGG
CTCGAGTGCATGATGCAGGATTACCCCAAAATGCTGCCGCTCGAGGCCAA
GGTGGGTTTCACCTCCCTCCCTGCCTGGTTTTCTTTCTCGCCTGTCAAGA
ACAATGCTCCCGATGCGGCGAAAGCTGCTCAAGCAGGAACTCCTCCTGGG
AGTGCGTCCACAGGAGAAGCTGATCAGTACTATGCCGTTGCGGAACAGCT
GCGATTGCTGGGATGCAAGGTGGGTAAGGCACCCGAGGCGACCTACACGG
GCATTCCAGTCAGCCTTGGCCCCCGGGTGGTAATTGACCCTTCGGTTGCT
TTGAACTTTTCAGAGATGAAGAAGGTTTTTCCTTCTCCCGACAGGGTTAC
TATTGGGGGGGAGGCAACTTTGGTGTTGCAGGGGCCGGGGGAGGTGGAGG
TGCAGAGCTTGGAGCTGGAGGGGGCTTTGGTCCTGTCTGTGGGAAAGGGG
ACGACTGTGATAGTGAAAGATATGGTAGTGAAGAATAAGGGTCATGTCGT
TGTCCCGGTTTCTGGAAAGGACGAGCCAGATGAGGTGCTACTCATGCGTG
GGTACCGGTTGGAGAAGCAGGACGAGCTTCGTGTCCAAGCCCCGGCGAAT
GCGGGCCGCATGGTTCTGGCCAGAGAGGGAAATCTGGCCGCCCACGTCAC
TGCGCCAGCGCCCACGCCAGCCACGGATGTGGAGTTGGAAGATAAGGCAG
TCAGTGGCAATTGTCTGGCACGGGCCTTTGATTGCTTCAAGAAGAAGCCT
GCGAGGGCATAA

Synonyms

Publications