jgi.p|Nanoce1779_2|603296, mRNA_8599 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603296
Unique NamemRNA_8599
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1941
Alignment locationscaffold_26:309706..311646 -

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Properties
Property NameValue
TranscriptId603382
TrackFilteredModels2
ProteinId603296
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:309706..311646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603296gene_8599Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603296mRNA_8599-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8599CDS_8599Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8599 ID=mRNA_8599|Name=jgi.p|Nanoce1779_2|603296|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp
ACAGGTCCCTTCAAACTGTATTCCTAGTGGACTCTGCGGCGTAGCTGACT
GTCCCCAACATCTCTACAACCCCGAATTCCTGCCTGCGAGGAGCAAGTTT
GCGGCCACAAAGCCATCTGTCAAGGATGATCCGCGTTGGCCTCATATTCC
TTGGCCTCCTTTATGCCACATCTACCCTCCCACAAGTGTACGCCTTCCAC
AATTTACTCCTACCTTCGAGTAGAATAAAACCTACTCCGTCGCCTGCCGC
CGCATGCTCGATATGGCAAGTCACCCCTACCTTCCTCTCCTTCCAAAGGT
CGCGACGGCATCATCTCGCCTCGACCGCCCTGACCTCTCCTTCTTCCCGT
GACGACGACGATAGTGAGGCTATATATACCGGTGCCATCTCCCCCGACAC
CGATATCCCCACCACCACGCCCTTCCAACGCAAGGCTGACGAAGCCGTGC
CCAGCTTGGCCGCCTTATTGCGCTTCACCATTCCTACCCTGGGTATCTGG
CTTGCGGGCCCTATTATGTCTCTGGTAGACACCTCGGTCGTTGGCCTCTC
TTCGGATCTCGCGCTTGCAGGCATGGGCCCTGCTACCAACCTGTGCGACT
CCTTTCTCTACCTTTTTACCTTTCTAGCCGTTGCCACCACGAATCTCCTT
GCGGGCGCCTTAGCAGACGGTGACAAAACTAAGAGCCAAACCGTCGTGTC
ACATGCCCTGGCAATCGCGCTCGGAGCCGGTATTGTGGTCATGCTACTGA
TTGAATTTGGAGGAAAGGCCATGCTCGCCGCTACAGTTGGCGCCGATGGC
CCGCTCCTCATCCCGGTCGCACTCAAATACACCAATATCCGAGCACTCGG
GGCGCCTTTTGTTCTCATGTCAATGGTTGCCCAAGCCTCCCTTCTCGGCG
CCAAGGACTCTGTCACCCCTCTCGTCGTCACAATTGCTGCGGCCATGATA
AATTTTATCCTCGATGTGGGCCTAGTGTCCTATGGCAAGTGTGGGATCGC
TGGTGCCGCCGTCGCAACCGTGATTGCAGAGATCGTAGGAACTTTTGTCC
TGCTCCGAGCGCTAAAACGTTCCCAAGGCCCTCGACGCCTCTACCCTTTC
ATCTGGCTCTCCTCGCCGTTCCAAGACATCACCAAGTTCTTCTCCTTTGC
TGGCCCTGTGTTTTTTGCGCTTTTTGGGAAATCCTTGTGCTATACTTCGC
TCGGCATCGCTGCGCAAATGATGGGCACTGTCCCCTTGGCCGCCCATCAG
GTCATGCTCCGATGCTTTTTCTTCTTCACGACCTTTGGCGACTCATTGTC
CACCACTGCTCAGGCATTCTTGCCTGGCTTCCTGGTCAACAACAACAGGC
TCGCGATTGGCAAAGTGGTTCGGAGGCTTGTCTTGATCAGTGTAGGGGTA
GGGGGGCTGAATGCGGCCTTGGCTGGGCTGATCCCTTCTTATTTTCCTGG
TCTGTTTACGACTAGCACAGATATTATTCGTGAGATGCATCTGATAGCGC
CATGGCTTTCAGCTTCGGCGCTCGCGCATGCGTGCACCATGGCGTTGGAG
GGGATCCTCCTCGCACAGCGCGAGCTTTCATACCTGACAGCATCCTACGC
GGTCAATACGATGTTGGTCGTTGGGGGGCTCTACAGCTTAAGGCATATTG
GAGGGGGTATTCAAGGCGTGTGGGCGTGTTTATTATTTTTCCAAATGAGT
CGCTGTATGGTATATGCGATTCGGCTGATGGGGAGGCATGGTTCCATCAA
ATGCGCGTGGGGGAAGCTGAAATCAATGCTCGGGAGAAGCATCAATGGGG
AGGAACCGGGTAAAAAGAAAGGGTAGATTAGATGTACGTTAAAAATAGGA
GTGCCGGGACGAGCTGGCAAGGTAATGAAGAGAAATAATGAGTAATAAAG
AAAAATAATAAGCAAATAACATCAGAATGAGTGACCGCGAG
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protein sequence of jgi.p|Nanoce1779_2|603296

>mRNA_8599-protein ID=mRNA_8599-protein|Name=jgi.p|Nanoce1779_2|603296|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MIRVGLIFLGLLYATSTLPQVYAFHNLLLPSSRIKPTPSPAAACSIWQVT
PTFLSFQRSRRHHLASTALTSPSSRDDDDSEAIYTGAISPDTDIPTTTPF
QRKADEAVPSLAALLRFTIPTLGIWLAGPIMSLVDTSVVGLSSDLALAGM
GPATNLCDSFLYLFTFLAVATTNLLAGALADGDKTKSQTVVSHALAIALG
AGIVVMLLIEFGGKAMLAATVGADGPLLIPVALKYTNIRALGAPFVLMSM
VAQASLLGAKDSVTPLVVTIAAAMINFILDVGLVSYGKCGIAGAAVATVI
AEIVGTFVLLRALKRSQGPRRLYPFIWLSSPFQDITKFFSFAGPVFFALF
GKSLCYTSLGIAAQMMGTVPLAAHQVMLRCFFFFTTFGDSLSTTAQAFLP
GFLVNNNRLAIGKVVRRLVLISVGVGGLNAALAGLIPSYFPGLFTTSTDI
IREMHLIAPWLSASALAHACTMALEGILLAQRELSYLTASYAVNTMLVVG
GLYSLRHIGGGIQGVWACLLFFQMSRCMVYAIRLMGRHGSIKCAWGKLKS
MLGRSINGEEPGKKKG*
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mRNA from alignment at scaffold_26:309706..311646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8599 ID=mRNA_8599|Name=jgi.p|Nanoce1779_2|603296|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at scaffold_26:309706..311646- (Nannochloropsis oceanica)
ACAGGTCCCTTCAAACTGTATTCCTAGTGGACTCTGCGGCGTAGCTGACT
GTCCCCAACATCTCTACAACCCCGAATTCCTGCCTGCGAGGAGCAAGTTT
GCGGCCACAAAGCCATCTGTCAAGGATGATCCGCGTTGGCCTCATATTCC
TTGGCCTCCTTTATGCCACATCTACCCTCCCACAAGTGTACGCCTTCCAC
AATTTACTCCTACCTTCGAGTAGAATAAAACCTACTCCGTCGCCTGCCGC
CGCATGCTCGATATGGCAAGTCACCCCTACCTTCCTCTCCTTCCAAAGGT
CGCGACGGCATCATCTCGCCTCGACCGCCCTGACCTCTCCTTCTTCCCGT
GACGACGACGATAGTGAGGCTATATATACCGGTGCCATCTCCCCCGACAC
CGATATCCCCACCACCACGCCCTTCCAACGCAAGGCTGACGAAGCCGTGC
CCAGCTTGGCCGCCTTATTGCGCTTCACCATTCCTACCCTGGGTATCTGG
CTTGCGGGCCCTATTATGTCTCTGGTAGACACCTCGGTCGTTGGCCTCTC
TTCGGATCTCGCGCTTGCAGGCATGGGCCCTGCTACCAACCTGTGCGACT
CCTTTCTCTACCTTTTTACCTTTCTAGCCGTTGCCACCACGAATCTCCTT
GCGGGCGCCTTAGCAGACGGTGACAAAACTAAGAGCCAAACCGTCGTGTC
ACATGCCCTGGCAATCGCGCTCGGAGCCGGTATTGTGGTCATGCTACTGA
TTGAATTTGGAGGAAAGGCCATGCTCGCCGCTACAGTTGGCGCCGATGGC
CCGCTCCTCATCCCGGTCGCACTCAAATACACCAATATCCGAGCACTCGG
GGCGCCTTTTGTTCTCATGTCAATGGTTGCCCAAGCCTCCCTTCTCGGCG
CCAAGGACTCTGTCACCCCTCTCGTCGTCACAATTGCTGCGGCCATGATA
AATTTTATCCTCGATGTGGGCCTAGTGTCCTATGGCAAGTGTGGGATCGC
TGGTGCCGCCGTCGCAACCGTGATTGCAGAGATCGTAGGAACTTTTGTCC
TGCTCCGAGCGCTAAAACGTTCCCAAGGCCCTCGACGCCTCTACCCTTTC
ATCTGGCTCTCCTCGCCGTTCCAAGACATCACCAAGTTCTTCTCCTTTGC
TGGCCCTGTGTTTTTTGCGCTTTTTGGGAAATCCTTGTGCTATACTTCGC
TCGGCATCGCTGCGCAAATGATGGGCACTGTCCCCTTGGCCGCCCATCAG
GTCATGCTCCGATGCTTTTTCTTCTTCACGACCTTTGGCGACTCATTGTC
CACCACTGCTCAGGCATTCTTGCCTGGCTTCCTGGTCAACAACAACAGGC
TCGCGATTGGCAAAGTGGTTCGGAGGCTTGTCTTGATCAGTGTAGGGGTA
GGGGGGCTGAATGCGGCCTTGGCTGGGCTGATCCCTTCTTATTTTCCTGG
TCTGTTTACGACTAGCACAGATATTATTCGTGAGATGCATCTGATAGCGC
CATGGCTTTCAGCTTCGGCGCTCGCGCATGCGTGCACCATGGCGTTGGAG
GGGATCCTCCTCGCACAGCGCGAGCTTTCATACCTGACAGCATCCTACGC
GGTCAATACGATGTTGGTCGTTGGGGGGCTCTACAGCTTAAGGCATATTG
GAGGGGGTATTCAAGGCGTGTGGGCGTGTTTATTATTTTTCCAAATGAGT
CGCTGTATGGTATATGCGATTCGGCTGATGGGGAGGCATGGTTCCATCAA
ATGCGCGTGGGGGAAGCTGAAATCAATGCTCGGGAGAAGCATCAATGGGG
AGGAACCGGGTAAAAAGAAAGGGTAGATTAGATGTACGTTAAAAATAGGA
GTGCCGGGACGAGCTGGCAAGGTAATGAAGAGAAATAATGAGTAATAAAG
AAAAATAATAAGCAAATAACATCAGAATGAGTGACCGCGAG
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Coding sequence (CDS) from alignment at scaffold_26:309706..311646-

>mRNA_8599 ID=mRNA_8599|Name=jgi.p|Nanoce1779_2|603296|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_26:309706..311646- (Nannochloropsis oceanica)
ATGATCCGCGTTGGCCTCATATTCCTTGGCCTCCTTTATGCCACATCTAC
CCTCCCACAAGTGTACGCCTTCCACAATTTACTCCTACCTTCGAGTAGAA
TAAAACCTACTCCGTCGCCTGCCGCCGCATGCTCGATATGGCAAGTCACC
CCTACCTTCCTCTCCTTCCAAAGGTCGCGACGGCATCATCTCGCCTCGAC
CGCCCTGACCTCTCCTTCTTCCCGTGACGACGACGATAGTGAGGCTATAT
ATACCGGTGCCATCTCCCCCGACACCGATATCCCCACCACCACGCCCTTC
CAACGCAAGGCTGACGAAGCCGTGCCCAGCTTGGCCGCCTTATTGCGCTT
CACCATTCCTACCCTGGGTATCTGGCTTGCGGGCCCTATTATGTCTCTGG
TAGACACCTCGGTCGTTGGCCTCTCTTCGGATCTCGCGCTTGCAGGCATG
GGCCCTGCTACCAACCTGTGCGACTCCTTTCTCTACCTTTTTACCTTTCT
AGCCGTTGCCACCACGAATCTCCTTGCGGGCGCCTTAGCAGACGGTGACA
AAACTAAGAGCCAAACCGTCGTGTCACATGCCCTGGCAATCGCGCTCGGA
GCCGGTATTGTGGTCATGCTACTGATTGAATTTGGAGGAAAGGCCATGCT
CGCCGCTACAGTTGGCGCCGATGGCCCGCTCCTCATCCCGGTCGCACTCA
AATACACCAATATCCGAGCACTCGGGGCGCCTTTTGTTCTCATGTCAATG
GTTGCCCAAGCCTCCCTTCTCGGCGCCAAGGACTCTGTCACCCCTCTCGT
CGTCACAATTGCTGCGGCCATGATAAATTTTATCCTCGATGTGGGCCTAG
TGTCCTATGGCAAGTGTGGGATCGCTGGTGCCGCCGTCGCAACCGTGATT
GCAGAGATCGTAGGAACTTTTGTCCTGCTCCGAGCGCTAAAACGTTCCCA
AGGCCCTCGACGCCTCTACCCTTTCATCTGGCTCTCCTCGCCGTTCCAAG
ACATCACCAAGTTCTTCTCCTTTGCTGGCCCTGTGTTTTTTGCGCTTTTT
GGGAAATCCTTGTGCTATACTTCGCTCGGCATCGCTGCGCAAATGATGGG
CACTGTCCCCTTGGCCGCCCATCAGGTCATGCTCCGATGCTTTTTCTTCT
TCACGACCTTTGGCGACTCATTGTCCACCACTGCTCAGGCATTCTTGCCT
GGCTTCCTGGTCAACAACAACAGGCTCGCGATTGGCAAAGTGGTTCGGAG
GCTTGTCTTGATCAGTGTAGGGGTAGGGGGGCTGAATGCGGCCTTGGCTG
GGCTGATCCCTTCTTATTTTCCTGGTCTGTTTACGACTAGCACAGATATT
ATTCGTGAGATGCATCTGATAGCGCCATGGCTTTCAGCTTCGGCGCTCGC
GCATGCGTGCACCATGGCGTTGGAGGGGATCCTCCTCGCACAGCGCGAGC
TTTCATACCTGACAGCATCCTACGCGGTCAATACGATGTTGGTCGTTGGG
GGGCTCTACAGCTTAAGGCATATTGGAGGGGGTATTCAAGGCGTGTGGGC
GTGTTTATTATTTTTCCAAATGAGTCGCTGTATGGTATATGCGATTCGGC
TGATGGGGAGGCATGGTTCCATCAAATGCGCGTGGGGGAAGCTGAAATCA
ATGCTCGGGAGAAGCATCAATGGGGAGGAACCGGGTAAAAAGAAAGGGTA
G
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Synonyms
Publications