jgi.p|Nanoce1779_2|603286, mRNA_8598 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603286
Unique NamemRNA_8598
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1570
Alignment locationscaffold_26:307533..309705 +

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Properties
Property NameValue
TranscriptId603372
TrackFilteredModels2
ProteinId603286
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:307533..309705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603286gene_8598Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603286mRNA_8598-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8598CDS_8598Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8598 ID=mRNA_8598|Name=jgi.p|Nanoce1779_2|603286|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp
AACAGTCCACGTGTCGGAAGCCTCCTAAGCGCACTCATCCTCCACATTCA
GTCGCACCCAGTTTGGTTCAATCACTGGCCTTTGAGCCAACACACCACTA
CATTCGAACATGTCTGCGTGTGTCATGCGTGTGGCACCAACGGGGCGGTA
GGTGCGGGGTTTCTGTATTTCGCCTTTCTCGCCTCATTTTGGCCAGCAGA
GACGTGCGCGTGTGGCTCCTTTCCCCTGTTCACTTGCATACACACGCATT
CTTCTACACATATAGATACATATATCCCGCAACATGCTTTTCCGCTCGCC
GTGCATCGCCTTCCGCCTTCTCGCCTCAAGTCTTTCACACACGCACTCTC
GATCCCTCATCTCTCCACCCCCTCACATGACACAAAATCACCCAGTCCAA
ACTTCATCTTACCATTATCGCCGCCTTCCATCAAACATGACTTACCTTGC
AGAAGTGAAGAGAGTCATCCTAGATCGTAAGGGTCTCCCCAGGATTAAGA
AGGCCTTCGGGACCAAGGTATGTCCCTCCCGTCCCTTTTTGATTTTTGGT
AATTCTTACCTCCTCTCTCGTCTTCCCCTCCCTCTCCTTCCTCTTCACCT
TAACAGGCCGACTGGAGTGCAGAGACCACAGAACAAAATCTTGCTACCTC
CATTTTATCACCTTCTATATTTCCCTCTTCTCCCTTCCTTCCACCGGATC
GACCTGCAACCCCGCCTGATCATAAAGGCCCTCCGCTCCGGCGTGGCCAG
CGGTGAGCTCATCCAGACCAAGATTCACTACAAGCTGCCACCGAAGCCCC
GACGCGTCAAGGAAACCGCCATTCCCAAGAACAAGAAGACGGTCGAGACC
ACCCTTCTTTCTCCACAGGTGAAGGTTCCTTTCCTCCCTCTCTGTCTACC
TACCCCTCTCCTCTTTTCGCCAAAGATCGGCTCTCACATTCCTATTACTC
TCTTACTTTCCCTCCTTCCCAAACTTATCCCACCCTTGCAGGCAAAGGCA
GCGCGTAAATCCGCCTAGCCCAAACTCGCCAAGCTCAAGGCCAGCAAAAA
GAAAAAGGAGATTGAGAAATCCATCAAGGCTAAGGCTACATACCACATGA
GCAACGACCTTGCGAGGACTGCGACACTTGAGTAGCCTCTTTGTCTCCTA
TCCTCCTATCCTCCATCTATACCTGCCTACCCTCTCCTTGTTAAAAGGAT
GGGGTAGAGCGTGGGAGCGTCGGTAGACCGGAGGCATGGTTGGGTGTATG
AACATAGAGCAGATTTGGCAGTTTTGTGTGTGTACCTTAAGAGAGTGAGG
GGAAAAGGTGGGGGAAAGAGTGAGAGAGTGGAAGAGGGTCATAAAAGAGC
AATATATGTATATGTTCTATGAAAGGAAGGGAGGGGGGTAAACGGATTGC
ATGTGTTGAGTAATGCTGAGAGAAAGAGGATGAGAAGGAGGGGGGGGGAT
GGAAGAGAAGAAAAAAGAACGCAGGGGGCAAGGCAGGAAGGAAGGCAATT
CATTATAAAGTGTCTTCCAAAGAACAATATAAAGAGTAATAGCTATCAAA
AATCACATTCAAGTTACACC
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protein sequence of jgi.p|Nanoce1779_2|603286

>mRNA_8598-protein ID=mRNA_8598-protein|Name=jgi.p|Nanoce1779_2|603286|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MLFRSPCIAFRLLASSLSHTHSRSLISPPPHMTQNHPVQTSSYHYRRLPS
NMTYLAEVKRVILDRKGLPRIKKAFGTKVCPSRPFLIFGNSYLLSRLPLP
LLPLHLNRPTGVQRPQNKILLPPFYHLLYFPLLPSFHRIDLQPRLIIKAL
RSGVASGELIQTKIHYKLPPKPRRVKETAIPKNKKTVETTLLSPQVKVPF
LPLCLPTPLLFSPKIGSHIPITLLLSLLPKLIPPLQAKAARKSA*
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mRNA from alignment at scaffold_26:307533..309705+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8598 ID=mRNA_8598|Name=jgi.p|Nanoce1779_2|603286|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at scaffold_26:307533..309705+ (Nannochloropsis oceanica)
AACAGTCCACGTGTCGGAAGCCTCCTAAGCGCACTCATCCTCCACATTCA
GTCGCACCCAGTTTGGTTCAATCACTGGCCTTTGAGCCAACACACCACTA
CATTCGAACATGTCTGCGTGTGTCATGCGTGTGGCACCAACGGGGCGGTA
GGTGCGGGGTTTCTGTATTTCGCCTTTCTCGCCTCATTTTGGCCAGCAGA
GACGTGCGCGTGTGGCTCCTTTCCCCTGTTCACTTGCATACACACGCATT
CTTCTACACATATAGATACATATATCCCGCAACATGCTTTTCCGCTCGCC
GTGCATCGCCTTCCGCCTTCTCGCCTCAAGTCTTTCACACACGCACTCTC
GATCCCTCATCTCTCCACCCCCTCACATGACACAAAATCACCCAGTCCAA
ACTTCATCTTACCATTATCGCCGCCTTCCATCAAACATGACTTACCTTGC
AGAAGTGAAGAGAGTCATCCTAGATCGTAAGGGTCTCCCCAGGATTAAGA
AGGCCTTCGGGACCAAGGTATGTCCCTCCCGTCCCTTTTTGATTTTTGGT
AATTCTTACCTCCTCTCTCGTCTTCCCCTCCCTCTCCTTCCTCTTCACCT
TAACAGGCCGACTGGAGTGCAGAGACCACAGAACAAAATCTTGCTACCTC
CATTTTATCACCTTCTATATTTCCCTCTTCTCCCTTCCTTCCACCGGATC
GACCTGCAACCCCGCCTGATCATAAAGGCCCTCCGCTCCGGCGTGGCCAG
CGGTGAGCTCATCCAGACCAAGATTCACTACAAGCTGCCACCGAAGCCCC
GACGCGTCAAGGAAACCGCCATTCCCAAGAACAAGAAGACGGTCGAGACC
ACCCTTCTTTCTCCACAGGTGAAGGTTCCTTTCCTCCCTCTCTGTCTACC
TACCCCTCTCCTCTTTTCGCCAAAGATCGGCTCTCACATTCCTATTACTC
TCTTACTTTCCCTCCTTCCCAAACTTATCCCACCCTTGCAGGCAAAGGCA
GCGCGTAAATCCGCCTAGGTAGCCCTCCTTGTTTCCAACGTTCTTGTCTG
TTTCCCTCCCTCCTTTCTCTATAAATCTTTCCCTGTCGTGCGTGATCCGC
ACTCACCTTTTTCTTTCTCATCCCATCCCTTCCCCCCTTCCTCACATCCC
ACGGCTGTGGCCACCCAGCCCAAACTCGCCAAGCTCAAGGCCAGCAAAAA
GGTATGATGGAGAGGAAGTAATGGAAGAAAGGAAGGGGAGAAGAGAAGGG
AGGGTAGGATAATGACTTTCAATAATCTATCGAGAGAAGATGAGCAGAAG
GAGGGATGGAGAGAGGGATGGGATTACCCACGGTTTCTACACCACCCACA
CGCCTGTATTCCACCTAATTCTCTTACAGAAGGCCCCGACGAAGAAAATG
ACGACCAAGAAAACTATCAAAGCCTCCCCTATCAGGATCTGTTGCGCTCT
TACCCTCCCTCTCTCCCTCCCTCCCTCCTCCTCTCCGTCTCTCATTAAAT
GACCCACTCCTTCTTTTCCTTCCTTTCTTACTCCCTCCTTCCCCCTTTAG
AAAAAGGAGATTGAGAAATCCATCAAGGCTAAGGTGTGTCTTCATTTTTC
TCTCTTTCCCTTCATACCCCCTTCCTCCCCTGTGTACGGCATCCCTCTTA
CACCGCCTTCTCCTTCTCTCCCTCCTTCCTGTAACAGGCTACATACCACA
TGAGCAACGACCTTGCGAGGACTGCGACACTTGAGTAGCCTCTTTGTCTC
CTATCCTCCTATCCTCCATCTATACCTGCCTACCCTCTCCTTGTTAAAAG
GATGGGGTAGAGCGTGGGAGCGTCGGTAGACCGGAGGCATGGTTGGGTGT
ATGAACATAGAGCAGATTTGGCAGTTTTGTGTGTGTACCTTAAGAGAGTG
AGGGGAAAAGGTGGGGGAAAGAGTGAGAGAGTGGAAGAGGGTCATAAAAG
AGCAATATATGTATATGTTCTATGAAAGGAAGGGAGGGGGGTAAACGGAT
TGCATGTGTTGAGTAATGCTGAGAGAAAGAGGATGAGAAGGAGGGGGGGG
GATGGAAGAGAAGAAAAAAGAACGCAGGGGGCAAGGCAGGAAGGAAGGCA
ATTCATTATAAAGTGTCTTCCAAAGAACAATATAAAGAGTAATAGCTATC
AAAAATCACATTCAAGTTACACC
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Coding sequence (CDS) from alignment at scaffold_26:307533..309705+

>mRNA_8598 ID=mRNA_8598|Name=jgi.p|Nanoce1779_2|603286|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_26:307533..309705+ (Nannochloropsis oceanica)
ATGCTTTTCCGCTCGCCGTGCATCGCCTTCCGCCTTCTCGCCTCAAGTCT
TTCACACACGCACTCTCGATCCCTCATCTCTCCACCCCCTCACATGACAC
AAAATCACCCAGTCCAAACTTCATCTTACCATTATCGCCGCCTTCCATCA
AACATGACTTACCTTGCAGAAGTGAAGAGAGTCATCCTAGATCGTAAGGG
TCTCCCCAGGATTAAGAAGGCCTTCGGGACCAAGGTATGTCCCTCCCGTC
CCTTTTTGATTTTTGGTAATTCTTACCTCCTCTCTCGTCTTCCCCTCCCT
CTCCTTCCTCTTCACCTTAACAGGCCGACTGGAGTGCAGAGACCACAGAA
CAAAATCTTGCTACCTCCATTTTATCACCTTCTATATTTCCCTCTTCTCC
CTTCCTTCCACCGGATCGACCTGCAACCCCGCCTGATCATAAAGGCCCTC
CGCTCCGGCGTGGCCAGCGGTGAGCTCATCCAGACCAAGATTCACTACAA
GCTGCCACCGAAGCCCCGACGCGTCAAGGAAACCGCCATTCCCAAGAACA
AGAAGACGGTCGAGACCACCCTTCTTTCTCCACAGGTGAAGGTTCCTTTC
CTCCCTCTCTGTCTACCTACCCCTCTCCTCTTTTCGCCAAAGATCGGCTC
TCACATTCCTATTACTCTCTTACTTTCCCTCCTTCCCAAACTTATCCCAC
CCTTGCAGGCAAAGGCAGCGCGTAAATCCGCCTAG
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Synonyms
Publications