jgi.p|Nanoce1779_2|546474, mRNA_8597 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546474
Unique Name	mRNA_8597
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1909
Alignment location	scaffold_26:305034..307266 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	546560
Track	FilteredModels2
ProteinId	546474

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:305034..307266 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546474	gene_8597	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546474	mRNA_8597-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8597	CDS_8597	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:305034..307266+
coding sequence from alignment at scaffold_26:305034..307266+

mRNA sequence

>mRNA_8597 ID=mRNA_8597|Name=jgi.p|Nanoce1779_2|546474|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp
ACCGACGACGACGTGCGGGCGGGCTGGAGTGAGGGAGGGAGGGGGGGAGA
GCGAGGGGGGGAGGGATGAGTCAGGAAGTTTGGGTTAAATGGCAGGAGAA
GGGAACAGAAACGTTTAAATGGCACACTCAGAAACATGATAGAGGGACAA
GTGTGCTTATTGGCAATCAAATGATGCTGATGTGCTCGGGGGGTCATTTC
TAGGGCCGATGATGGATGAGTCAGGTAAGCGGGACATGTTTGACTCCACA
CTTACAGTTTGACGAGGAAGACGAGCCCGACATGACGACGCGCCGGGCTG
CCAAGCATCTCCTGCTCACGCTGTTGCTCTTGGAATTTGGACTGAGACCA
CGGAGGAAAGCGGAGGCGGGGGCGGGACCGAGAAAGGCCAGGAAAGAGAG
GAGGAGAAGGGGCAAAGAGCGTCGTGTGCTGCGCGTTTTGCCACTGGTGC
TGTTACAAGATGCCCCCGTCGCCGGCTGGCGGTTTATAGAGGATATTGCC
ATGGTAATGGTGTGCTGTGGGTCGATTTACATGTGCGGACAATGGTGAGA
CAGGGCACCAGGTCAGGAAATGGGAAATAAGAGGCGGAAATCATGATCGC
CGCTGCCGCAACGTCACGACTCTCGGAGCAACTCGATGGCGGCGTCCAAG
CCCGGCTTGGTAGAGCATTTGAAGCACTCACGTCTGATCCTATGCATCCA
CACACAGGCAGGAGCAGCTGGGGAGTCCCAGGCTGCCCACTTTCACGGCC
CACGGTTGCTTACGCTTGCTCTTCCTCCGCTTTATGCAAGTCAAGCTCGC
TCTCAGATCTAAGCCAAGCAGCACCATTACCATACGACCCTTTAAAGACA
GCATGCGACCCTTTGGCAACGCCCTCTTACTCCTCGTCCTCATCCCTGCC
ATGCTTATGACGCATGCCTTTCTCTTGCCAGCGTCTGTCTTGTCCTCCTC
CAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCAGCAGCCGCGAGGAGGAG
CTGCGATGAGACTCTATACCGGTGGTCCTGCCGCTAGCCAAGACTGGGCG
TTAATTTTTGACTGCGACGGTGTCATTCTTGAGTCCGAATCCCTTCATCG
TGAAGCCTACAATGCTATGTTCCGTGAATTTCAAATTTCCTATCACTGGA
ACGAAGAGTACTACGACGAGCTACAAAATAAAATCGGAGGCGGCATTCCT
AAGATGCGCTATTACTTTGGAGAACACGGCTGGCCATCTTCCTCCCTCGG
TTCCTCTCCCCCTTCCTCTTCGGAGGATAAAGAAAAGATGTTGAACACAT
TGCAGGATCGGAAAACTGATATATACAAGGACATGATAAGGGGTGGTACG
GCTCAGGTTCGCCCTGGTGTGCTACGATTGATCAAGGAGGCGAGAGCATT
GAAGGAGGGAGGGAGGGAGGGAGGGGCTCCGAAGCTGGCGATTTGCTCGG
CATCGACCAAGACTAGTTGTTTGTTTGTACTGGATAACTTGTTGGGGGAG
GAAGTATTGCAGAATTTTGATTTGATTTTGGCGGGGGATGACGTCAAGAA
CCGGAAGCCTGACCCGGAGATTTATAGCATGGCAAGCGAGAGGCTCGGCA
TCCCCGCCAGCCGCTCCGTCGTCATCGAAGACAGCCTCATTGGGCTTCAA
GCTGCGCTAGGTGCCAAAATGCCGTGCATCATCACGTCCACACCTTCGAC
CAGGGGCCAGGATTTCACGGCGGCTCACGCTGTGTTTACTGAGCTAGGGG
ACGGAGACGGCATTCAGGTGACGGCCAAACAATTGAGGGATATAGCGCTG
GGCAACTCAAAAGGGTTTGGAAAGTAGAAGCAGATGTCTTGAACAGATCG
ATGAAGAAAAAGTGAAATGAAAAACTGAGAGTAGATGGGGTGATTTTTGA
TTTCCTGTT

protein sequence of jgi.p|Nanoce1779_2|546474

>mRNA_8597-protein ID=mRNA_8597-protein|Name=jgi.p|Nanoce1779_2|546474|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MQVKLALRSKPSSTITIRPFKDSMRPFGNALLLLVLIPAMLMTHAFLLPA
SVLSSSKSISASRERQQQPRGGAAMRLYTGGPAASQDWALIFDCDGVILE
SESLHREAYNAMFREFQISYHWNEEYYDELQNKIGGGIPKMRYYFGEHGW
PSSSLGSSPPSSSEDKEKMLNTLQDRKTDIYKDMIRGGTAQVRPGVLRLI
KEARALKEGGREGGAPKLAICSASTKTSCLFVLDNLLGEEVLQNFDLILA
GDDVKNRKPDPEIYSMASERLGIPASRSVVIEDSLIGLQAALGAKMPCII
TSTPSTRGQDFTAAHAVFTELGDGDGIQVTAKQLRDIALGNSKGFGK*

mRNA from alignment at scaffold_26:305034..307266+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8597 ID=mRNA_8597|Name=jgi.p|Nanoce1779_2|546474|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp|location=Sequence derived from alignment at scaffold_26:305034..307266+ (Nannochloropsis oceanica)
ACCGACGACGACGTGCGGGCGGGCTGGAGTGAGGGAGGGAGGGGGGGAGA
GCGAGGGGGGGAGGGATGAGTCAGGAAGTTTGGGTTAAATGGCAGGAGAA
GGGAACAGAAACGTTTAAATGGCACACTCAGAAACATGATAGAGGGACAA
GTGTGCTTATTGGCAATCAAATGATGCTGATGTGCTCGGGGGGTCATTTC
TAGGGCCGATGATGGATGAGTCAGGTAAGCGGGACATGTTTGACTCCACA
CTTACAGTTTGACGAGGAAGACGAGCCCGACATGACGACGCGCCGGGCTG
CCAAGCATCTCCTGCTCACGCTGTTGCTCTTGGAATTTGGACTGAGACCA
CGGAGGAAAGCGGAGGCGGGGGCGGGACCGAGAAAGGCCAGGAAAGAGAG
GAGGAGAAGGGGCAAAGAGCGTCGTGTGCTGCGCGTTTTGCCACTGGTGC
TGTTACAAGATGCCCCCGTCGCCGGCTGGCGGTTTATAGAGGATATTGCC
ATGGTAATGGTGTGCTGTGGGTCGATTTACATGTGCGGACAATGGTGAGA
CAGGGCACCAGGTCAGGAAATGGGAAATAAGAGGCGGAAATCATGATCGC
CGCTGCCGCAACGTCACGACTCTCGGAGCAACTCGATGGCGGCGTCCAAG
CCCGGCTTGGTAGAGCATTTGAAGCACTCACGTCTGATCCTATGCATCCA
CACACAGGCAGGAGCAGCTGGGGAGTCCCAGGCTGCCCACTTTCACGGCC
CACGGTTGCTTACGCTTGCTCTTCCTCCGCTTTATGCAAGTCAAGCTCGC
TCTCAGATCTAAGCCAAGCAGCACCATTACCATACGACCCTTTAAAGACA
GCATGCGACCCTTTGGCAACGCCCTCTTACTCCTCGTCCTCATCCCTGCC
ATGCTTATGACGCATGCCTTTCTCTTGCCAGCGTCTGTCTTGTCCTCCTC
CAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCAGCAGCCGCGAGGAGGAG
CTGCGATGAGACTCTATACCGGTGGTCCTGCCGCTAGCCAAGACTGGGCG
TTAATTTTTGACTGCGACGGTGTCATTCTTGAGGCACGTACATGATGCTT
ATGGAATCCTGCCGCTATAGTCAATTTCCATCGTATCCTGCCATCGTGCC
CACATTCATTTCTCCCTTTCTCCCTCCCCTTCCCTCCCCTACCTTCTTTT
CTTAGTCCGAATCCCTTCATCGTGAAGCCTACAATGCTATGTTCCGTGAA
TTTCAAATTTCCTATCACTGGAACGAAGAGTACTACGACGAGCTACAAAA
TAAAATCGGAGGCGGCATTCCTAAGATGCGCTATTACTTTGGAGAACACG
GCTGGCCATCTTCCTCCCTCGGTTCCTCTCCCCCTTCCTCTTCGGAGGAT
AAAGAAAAGATGTTGAACACATTGCAGGATCGGAAAACTGATATATACAA
GGACATGATAAGGGGTGGTACGGCTCAGGTTCGCCCTGGTGTGCTACGAT
TGATCAAGGAGGCGAGAGCATTGAAGGAGGGAGGGAGGGAGGGAGGGGCT
CCGAAGCTGGCGATTTGCTCGGCATCGACCAAGACTAGTTGTTTGTTTGT
ACTGGATAACTTGTTGGGGGAGGAAGTATTGCAGAATTTTGATTTGATTT
TGGCGGGGGATGACGTCAAGAACCGGAAGCCTGACCCGGAGATTTATAGC
ATGGCAAGCGAGAGGTAGGAAGGGAGGGTGAGGTGGGAGGGAAGGAGGAG
TAAAATCGGGGGCCAAAGGGATTTAAATGGATCTATGCGGATATGTGATA
TATCTCTGTATGCTTTGTTGTGCGATACAGTCTACATATGACTCTTTCCG
GTAAGCGGGCGTACGTCTTTTTCCTTTGCTTACGCTCCCTTCCACGCTTC
ATTCCCCCTGTAATAGGCTCGGCATCCCCGCCAGCCGCTCCGTCGTCATC
GAAGACAGCCTCATTGGGCTTCAAGCTGCGCTAGGTGCCAAAATGCCGTG
CATCATCACGTCCACACCTTCGACCAGGGGCCAGGATTTCACGGCGGCTC
ACGCTGTGTTTACTGAGCTAGGGGACGGAGACGGCATTCAGGTGACGGCC
AAACAATTGAGGGATATAGCGCTGGGCAACTCAAAAGGGTTTGGAAAGTA
GAAGCAGATGTCTTGAACAGATCGATGAAGAAAAAGTGAAATGAAAAACT
GAGAGTAGATGGGGTGATTTTTGATTTCCTGTT

Coding sequence (CDS) from alignment at scaffold_26:305034..307266+

>mRNA_8597 ID=mRNA_8597|Name=jgi.p|Nanoce1779_2|546474|organism=Nannochloropsis oceanica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_26:305034..307266+ (Nannochloropsis oceanica)
ATGCAAGTCAAGCTCGCTCTCAGATCTAAGCCAAGCAGCACCATTACCAT
ACGACCCTTTAAAGACAGCATGCGACCCTTTGGCAACGCCCTCTTACTCC
TCGTCCTCATCCCTGCCATGCTTATGACGCATGCCTTTCTCTTGCCAGCG
TCTGTCTTGTCCTCCTCCAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCA
GCAGCCGCGAGGAGGAGCTGCGATGAGACTCTATACCGGTGGTCCTGCCG
CTAGCCAAGACTGGGCGTTAATTTTTGACTGCGACGGTGTCATTCTTGAG
TCCGAATCCCTTCATCGTGAAGCCTACAATGCTATGTTCCGTGAATTTCA
AATTTCCTATCACTGGAACGAAGAGTACTACGACGAGCTACAAAATAAAA
TCGGAGGCGGCATTCCTAAGATGCGCTATTACTTTGGAGAACACGGCTGG
CCATCTTCCTCCCTCGGTTCCTCTCCCCCTTCCTCTTCGGAGGATAAAGA
AAAGATGTTGAACACATTGCAGGATCGGAAAACTGATATATACAAGGACA
TGATAAGGGGTGGTACGGCTCAGGTTCGCCCTGGTGTGCTACGATTGATC
AAGGAGGCGAGAGCATTGAAGGAGGGAGGGAGGGAGGGAGGGGCTCCGAA
GCTGGCGATTTGCTCGGCATCGACCAAGACTAGTTGTTTGTTTGTACTGG
ATAACTTGTTGGGGGAGGAAGTATTGCAGAATTTTGATTTGATTTTGGCG
GGGGATGACGTCAAGAACCGGAAGCCTGACCCGGAGATTTATAGCATGGC
AAGCGAGAGGCTCGGCATCCCCGCCAGCCGCTCCGTCGTCATCGAAGACA
GCCTCATTGGGCTTCAAGCTGCGCTAGGTGCCAAAATGCCGTGCATCATC
ACGTCCACACCTTCGACCAGGGGCCAGGATTTCACGGCGGCTCACGCTGT
GTTTACTGAGCTAGGGGACGGAGACGGCATTCAGGTGACGGCCAAACAAT
TGAGGGATATAGCGCTGGGCAACTCAAAAGGGTTTGGAAAGTAGATGCAA
GTCAAGCTCGCTCTCAGATCTAAGCCAAGCAGCACCATTACCATACGACC
CTTTAAAGACAGCATGCGACCCTTTGGCAACGCCCTCTTACTCCTCGTCC
TCATCCCTGCCATGCTTATGACGCATGCCTTTCTCTTGCCAGCGTCTGTC
TTGTCCTCCTCCAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCAGCAGCC
GCGAGGAGGAGCTGCGATGAGACTCTATACCGGTGGTCCTGCCGCTAGCC
AAGACTGGGCGTTAATTTTTGACTGCGACGGTGTCATTCTTGAGTCCGAA
TCCCTTCATCGTGAAGCCTACAATGCTATGTTCCGTGAATTTCAAATTTC
CTATCACTGGAACGAAGAGTACTACGACGAGCTACAAAATAAAATCGGAG
GCGGCATTCCTAAGATGCGCTATTACTTTGGAGAACACGGCTGGCCATCT
TCCTCCCTCGGTTCCTCTCCCCCTTCCTCTTCGGAGGATAAAGAAAAGAT
GTTGAACACATTGCAGGATCGGAAAACTGATATATACAAGGACATGATAA
GGGGTGGTACGGCTCAGGTTCGCCCTGGTGTGCTACGATTGATCAAGGAG
GCGAGAGCATTGAAGGAGGGAGGGAGGGAGGGAGGGGCTCCGAAGCTGGC
GATTTGCTCGGCATCGACCAAGACTAGTTGTTTGTTTGTACTGGATAACT
TGTTGGGGGAGGAAGTATTGCAGAATTTTGATTTGATTTTGGCGGGGGAT
GACGTCAAGAACCGGAAGCCTGACCCGGAGATTTATAGCATGGCAAGCGA
GAGGCTCGGCATCCCCGCCAGCCGCTCCGTCGTCATCGAAGACAGCCTCA
TTGGGCTTCAAGCTGCGCTAGGTGCCAAAATGCCGTGCATCATCACGTCC
ACACCTTCGACCAGGGGCCAGGATTTCACGGCGGCTCACGCTGTGTTTAC
TGAGCTAGGGGACGGAGACGGCATTCAGGTGACGGCCAAACAATTGAGGG
ATATAGCGCTGGGCAACTCAAAAGGGTTTGGAAAGTAGATGCAAGTCAAG
CTCGCTCTCAGATCTAAGCCAAGCAGCACCATTACCATACGACCCTTTAA
AGACAGCATGCGACCCTTTGGCAACGCCCTCTTACTCCTCGTCCTCATCC
CTGCCATGCTTATGACGCATGCCTTTCTCTTGCCAGCGTCTGTCTTGTCC
TCCTCCAAGTCGATCTCAGCGTCGCGCGAAAGGCAGCAGCAGCCGCGAGG
AGGAGCTGCGATGAGACTCTATACCGGTGGTCCTGCCGCTAGCCAAGACT
GGGCGTTAATTTTTGACTGCGACGGTGTCATTCTTGAGTCCGAATCCCTT
CATCGTGAAGCCTACAATGCTATGTTCCGTGAATTTCAAATTTCCTATCA
CTGGAACGAAGAGTACTACGACGAGCTACAAAATAAAATCGGAGGCGGCA
TTCCTAAGATGCGCTATTACTTTGGAGAACACGGCTGGCCATCTTCCTCC
CTCGGTTCCTCTCCCCCTTCCTCTTCGGAGGATAAAGAAAAGATGTTGAA
CACATTGCAGGATCGGAAAACTGATATATACAAGGACATGATAAGGGGTG
GTACGGCTCAGGTTCGCCCTGGTGTGCTACGATTGATCAAGGAGGCGAGA
GCATTGAAGGAGGGAGGGAGGGAGGGAGGGGCTCCGAAGCTGGCGATTTG
CTCGGCATCGACCAAGACTAGTTGTTTGTTTGTACTGGATAACTTGTTGG
GGGAGGAAGTATTGCAGAATTTTGATTTGATTTTGGCGGGGGATGACGTC
AAGAACCGGAAGCCTGACCCGGAGATTTATAGCATGGCAAGCGAGAGGCT
CGGCATCCCCGCCAGCCGCTCCGTCGTCATCGAAGACAGCCTCATTGGGC
TTCAAGCTGCGCTAGGTGCCAAAATGCCGTGCATCATCACGTCCACACCT
TCGACCAGGGGCCAGGATTTCACGGCGGCTCACGCTGTGTTTACTGAGCT
AGGGGACGGAGACGGCATTCAGGTGACGGCCAAACAATTGAGGGATATAG
CGCTGGGCAACTCAAAAGGGTTTGGAAAGTAG

Synonyms

Publications