jgi.p|Nanoce1779_2|603275, mRNA_8595 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603275
Unique Name	mRNA_8595
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1638
Alignment location	scaffold_26:300678..302730 -

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Properties


Property Name	Value
TranscriptId	603361
Track	FilteredModels2
ProteinId	603275

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:300678..302730 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603275	gene_8595	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603275	mRNA_8595-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8595	CDS_8595	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:300678..302730-
coding sequence from alignment at scaffold_26:300678..302730-

mRNA sequence

>mRNA_8595 ID=mRNA_8595|Name=jgi.p|Nanoce1779_2|603275|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp
AGACAGCACCGACACGACACGGTCTATACACATAACTAGCTTTCTTAACC
GCTTCCGATCGGCTTAAACTCAGCGTCACCAGCCGCCGTCACTGCAGCCG
CAAGAAATATACACCATCGAGCAGCACGGATGTCAACAGCAACGACAACG
ACGACGCTTCTTAGGAATAATAATAATCCCGACCATCACGAGACAGGAGC
GGTCGCGGGTCTGGACCTCTTTCCTCGTCCTCCGCGCACGGCTTATGATT
TGTATCGGGACCAAAGCCACACTCGTCGTGTCTCGCTTGGTTGTCCTGTG
CTCGACGCCACATTCGGTGGGGGGCTACCTGGTCACGGCATAGTGGACAT
CTCGGGCATGGCGGGTGCAGGGAAGACACAACTGATGCTCCAGTTGTTGG
TCCAGCAAGTGAAGGACGCAGAGAGCGAGTGGCGGAATGCGAATTATTCG
ACGCCGTTTGTAGCGGGTCGTTCTTTTTATCTCTCGACCGAAGGTCCGCT
CCCAGCAAAGCGGCTTGCTGACATGGCCGCTGCTGCGTGCCCTGGAGACA
GTGGCTTCGCTCAGCGGGTGCTGGAGAGTGTGATTATCGTGGAGGCGAAG
AATGTGGAGGATCAGCTGTACCTTCTGACGACCCAATTGCCCTCTTTGCT
GGCCGATTCTTCTCTTGGTAAAATCCGTCTGTGTGTTATCGATTCCATGT
CCGCCCTCTTTCGTGGAGAGTTTTCCTTATCCAAAGGCGACACGTTGGAG
AGAGCCAAGATGATCTTTGCCATGGCCAAACAAATGAAGACACTTTCCGA
CAAATTCAAAATTCCGTTTGTGGTAACGAACCAAGTAACGGCCGATTTCC
AGGTTGGGCAAGCAGGACAAAGAGGATGGGAGGGAGGGATGGAAGGAGGG
GGAGTACAGCCGGCCTTGGGGCTTAGTTGGTCGAATTGTGTGCATTCGCG
GTATTTGCTCACACGGCGGGACAAGAACAATGTGTGGCCCGTGGCCTCCC
TCCCTCCCTCCCTCCCACATTCGGCTATAACCATGGAAGAGACGGGTGGG
ATCAATGGCAGCGGCAGCAATAGCAGTCAGTGGGTGAGGCAGATGCGTTT
GTTGCTTTCCCCTTCCCTCCCACGCGACCTGTCGTGTCAATTTGTGGTCG
AGACGGCGGGGGTGCGAGGAGTGGGAGGAAGGGGAGTGGCGTTGGAGGAG
GAAGGTTGATATCAGAGCCTCTTTTGTTCTTTCTTCCTCCCTTGATCCCC
TGTGATCAGTCACGTCCATTTGGGGTGCAGACGGCGAGGATGGAGGGAGG
GAGAAAGCAGTGATAAAGAGGAGTAGAGCCTCGCGTTTCCACCTATATCG
ATAGAATTTTGGGGGGGGGTAAGAGAGAGAGTGGCATGAATGCACCCTCT
CTGTCCCTCCTTCTCTCTCTACATACATTCATATGTACAGATCTCTCTCT
CTATCTTTAGAGAGAAGAATAGAGCGAAGCAGGACAAGGCAATAAAAGAG
TAGGTTTGGTACGGCTGGATGACAAGACGACTGGATGGAAGTAAAACAGG
GTGAAAGGGAATTGGAAAGAGACCTGCGTTTTTTTTAAAGGCGAGAAAAT
GAAAGGATGGCAAAGAAAACACGTGTAAAAGTGCTGGC

protein sequence of jgi.p|Nanoce1779_2|603275

>mRNA_8595-protein ID=mRNA_8595-protein|Name=jgi.p|Nanoce1779_2|603275|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MSTATTTTTLLRNNNNPDHHETGAVAGLDLFPRPPRTAYDLYRDQSHTRR
VSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESE
WRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLES
VIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSL
SKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQRGW
EGGMEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAI
TMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGVGG
RGVALEEEG*

mRNA from alignment at scaffold_26:300678..302730-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8595 ID=mRNA_8595|Name=jgi.p|Nanoce1779_2|603275|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at scaffold_26:300678..302730- (Nannochloropsis oceanica)
AGACAGCACCGACACGACACGGTCTATACACATAACTAGCTTTCTTAACC
GCTTCCGATCGGCTTAAACTCAGCGTCACCAGCCGCCGTCACTGCAGCCG
CAAGAAATATACACCATCGAGCAGCACGGATGTCAACAGCAACGACAACG
ACGACGCTTCTTAGGAATAATAATAATCCCGACCATCACGAGACAGGAGC
GGTCGCGGGTCTGGACCTCTTTCCTCGTCCTCCGCGCACGGCTTATGATT
TGTATCGGGTACGTGTCAGGAGTGACGATTGCCGGAGGAGGATGGGGAGG
GACGAGGGAGGAGAAAGCATGTTCGAGGATGAGTGTGTGTGTGCTTGGAC
CATGGAAGCAAGCAACGATTGATTTTACACGTGGTATTTATGCCTTGTTT
CAAAACTTTTGCGAACCAAGCCGAACAGCACCGCCCGCACATTCAGATCC
TCCCTCCCTCCGTCTCTCGCTTCACTTCTTGCCTGAAACAGGACCAAAGC
CACACTCGTCGTGTCTCGCTTGGTTGTCCTGTGCTCGACGCCACATTCGG
TGGGGGGCTACCTGGTCACGGCATAGTGGACATCTCGGGCATGGCGGGTG
CAGGGAAGACACAACTGATGCTCCAGTTGTTGGTCCAGCAAGTGAAGGAC
GCAGAGAGCGAGTGGCGGAATGCGAATTATTCGACGCCGTTTGTAGCGGG
TCGTTCTTTTTATCTCTCGACCGAAGGTCCGCTCCCAGCAAAGCGGCTTG
CTGACATGGCCGCTGCTGCGTGCCCTGGAGACAGTGGCTTCGCTCAGCGG
GTGCTGGAGAGTGTGATTATCGTGGAGGCGAAGAATGTGGAGGATCAGCT
GTACCTTCTGACGACCCAATTGCCCTCTTTGCTGGCCGATTCTTCTCTTG
GTGAGTTGAGTCCTTTTGTTTGTTTCAACCAATCACTTGATTGACTGTTT
GATTATTTATATATTCATGTATTCATGCATTCATCTTATTATTCCCTCCC
TATCTCCCTCCCTTCCTCCCTATTTCCCGCCTACCCCCCTCCTTTCCATC
CCTCCCTTCCTCCCCCCCTCCTTCCAAACCAGGTAAAATCCGTCTGTGTG
TTATCGATTCCATGTCCGCCCTCTTTCGTGGAGAGTTTTCCTTATCCAAA
GGCGACACGTTGGAGAGAGCCAAGATGATCTTTGCCATGGCCAAACAAAT
GAAGACACTTTCCGACAAATTCAAAATTCCGTTTGTGGTAACGAACCAAG
TAACGGCCGATTTCCAGGTTGGGCAAGCAGGACAAAGAGGATGGGAGGGA
GGGATGGAAGGAGGGGGAGTACAGCCGGCCTTGGGGCTTAGTTGGTCGAA
TTGTGTGCATTCGCGGTATTTGCTCACACGGCGGGACAAGAACAATGTGT
GGCCCGTGGCCTCCCTCCCTCCCTCCCTCCCACATTCGGCTATAACCATG
GAAGAGACGGGTGGGATCAATGGCAGCGGCAGCAATAGCAGTCAGTGGGT
GAGGCAGATGCGTTTGTTGCTTTCCCCTTCCCTCCCACGCGACCTGTCGT
GTCAATTTGTGGTCGAGACGGCGGGGGTGCGAGGAGTGGGAGGAAGGGGA
GTGGCGTTGGAGGAGGAAGGTTGATATCAGAGCCTCTTTTGTTCTTTCTT
CCTCCCTTGATCCCCTGTGATCAGTCACGTCCATTTGGGGTGCAGACGGC
GAGGATGGAGGGAGGGAGAAAGCAGTGATAAAGAGGAGTAGAGCCTCGCG
TTTCCACCTATATCGATAGAATTTTGGGGGGGGGTAAGAGAGAGAGTGGC
ATGAATGCACCCTCTCTGTCCCTCCTTCTCTCTCTACATACATTCATATG
TACAGATCTCTCTCTCTATCTTTAGAGAGAAGAATAGAGCGAAGCAGGAC
AAGGCAATAAAAGAGTAGGTTTGGTACGGCTGGATGACAAGACGACTGGA
TGGAAGTAAAACAGGGTGAAAGGGAATTGGAAAGAGACCTGCGTTTTTTT
TAAAGGCGAGAAAATGAAAGGATGGCAAAGAAAACACGTGTAAAAGTGCT
GGC

Coding sequence (CDS) from alignment at scaffold_26:300678..302730-

>mRNA_8595 ID=mRNA_8595|Name=jgi.p|Nanoce1779_2|603275|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_26:300678..302730- (Nannochloropsis oceanica)
GTAAAATCCGTCTGTGTGTTATCGATTCCATGTCCGCCCTCTTTCGTGGA
GAGTTTTCCTTATCCAAAGGCGACACGTTGGAGAGAGCCAAGATGATCTT
TGCCATGGCCAAACAAATGAAGACACTTTCCGACAAATTCAAAATTCCGT
TTGTGGTAACGAACCAAGTAACGGCCGATTTCCAGGTTGGGCAAGCAGGA
CAAAGAGGATGGGAGGGAGGGATGGAAGGAGGGGGAGTACAGCCGGCCTT
GGGGCTTAGTTGGTCGAATTGTGTGCATTCGCGGTATTTGCTCACACGGC
GGGACAAGAACAATGTGTGGCCCGTGGCCTCCCTCCCTCCCTCCCTCCCA
CATTCGGCTATAACCATGGAAGAGACGGGTGGGATCAATGGCAGCGGCAG
CAATAGCAGTCAGTGGGTGAGGCAGATGCGTTTGTTGCTTTCCCCTTCCC
TCCCACGCGACCTGTCGTGTCAATTTGTGGTCGAGACGGCGGGGGTGCGA
GGAGTGGGAGGAAGGGGAGTGGCGTTGGAGGAGGAAGGTTGAGACCAAAG
CCACACTCGTCGTGTCTCGCTTGGTTGTCCTGTGCTCGACGCCACATTCG
GTGGGGGGCTACCTGGTCACGGCATAGTGGACATCTCGGGCATGGCGGGT
GCAGGGAAGACACAACTGATGCTCCAGTTGTTGGTCCAGCAAGTGAAGGA
CGCAGAGAGCGAGTGGCGGAATGCGAATTATTCGACGCCGTTTGTAGCGG
GTCGTTCTTTTTATCTCTCGACCGAAGGTCCGCTCCCAGCAAAGCGGCTT
GCTGACATGGCCGCTGCTGCGTGCCCTGGAGACAGTGGCTTCGCTCAGCG
GGTGCTGGAGAGTGTGATTATCGTGGAGGCGAAGAATGTGGAGGATCAGC
TGTACCTTCTGACGACCCAATTGCCCTCTTTGCTGGCCGATTCTTCTCTT
GATGTCAACAGCAACGACAACGACGACGCTTCTTAGGAATAATAATAATC
CCGACCATCACGAGACAGGAGCGGTCGCGGGTCTGGACCTCTTTCCTCGT
CCTCCGCGCACGGCTTATGATTTGTATCGGGTAAAATCCGTCTGTGTGTT
ATCGATTCCATGTCCGCCCTCTTTCGTGGAGAGTTTTCCTTATCCAAAGG
CGACACGTTGGAGAGAGCCAAGATGATCTTTGCCATGGCCAAACAAATGA
AGACACTTTCCGACAAATTCAAAATTCCGTTTGTGGTAACGAACCAAGTA
ACGGCCGATTTCCAGGTTGGGCAAGCAGGACAAAGAGGATGGGAGGGAGG
GATGGAAGGAGGGGGAGTACAGCCGGCCTTGGGGCTTAGTTGGTCGAATT
GTGTGCATTCGCGGTATTTGCTCACACGGCGGGACAAGAACAATGTGTGG
CCCGTGGCCTCCCTCCCTCCCTCCCTCCCACATTCGGCTATAACCATGGA
AGAGACGGGTGGGATCAATGGCAGCGGCAGCAATAGCAGTCAGTGGGTGA
GGCAGATGCGTTTGTTGCTTTCCCCTTCCCTCCCACGCGACCTGTCGTGT
CAATTTGTGGTCGAGACGGCGGGGGTGCGAGGAGTGGGAGGAAGGGGAGT
GGCGTTGGAGGAGGAAGGTTGAGACCAAAGCCACACTCGTCGTGTCTCGC
TTGGTTGTCCTGTGCTCGACGCCACATTCGGTGGGGGGCTACCTGGTCAC
GGCATAGTGGACATCTCGGGCATGGCGGGTGCAGGGAAGACACAACTGAT
GCTCCAGTTGTTGGTCCAGCAAGTGAAGGACGCAGAGAGCGAGTGGCGGA
ATGCGAATTATTCGACGCCGTTTGTAGCGGGTCGTTCTTTTTATCTCTCG
ACCGAAGGTCCGCTCCCAGCAAAGCGGCTTGCTGACATGGCCGCTGCTGC
GTGCCCTGGAGACAGTGGCTTCGCTCAGCGGGTGCTGGAGAGTGTGATTA
TCGTGGAGGCGAAGAATGTGGAGGATCAGCTGTACCTTCTGACGACCCAA
TTGCCCTCTTTGCTGGCCGATTCTTCTCTTGATGTCAACAGCAACGACAA
CGACGACGCTTCTTAGGAATAATAATAATCCCGACCATCACGAGACAGGA
GCGGTCGCGGGTCTGGACCTCTTTCCTCGTCCTCCGCGCACGGCTTATGA
TTTGTATCGGGTAAAATCCGTCTGTGTGTTATCGATTCCATGTCCGCCCT
CTTTCGTGGAGAGTTTTCCTTATCCAAAGGCGACACGTTGGAGAGAGCCA
AGATGATCTTTGCCATGGCCAAACAAATGAAGACACTTTCCGACAAATTC
AAAATTCCGTTTGTGGTAACGAACCAAGTAACGGCCGATTTCCAGGTTGG
GCAAGCAGGACAAAGAGGATGGGAGGGAGGGATGGAAGGAGGGGGAGTAC
AGCCGGCCTTGGGGCTTAGTTGGTCGAATTGTGTGCATTCGCGGTATTTG
CTCACACGGCGGGACAAGAACAATGTGTGGCCCGTGGCCTCCCTCCCTCC
CTCCCTCCCACATTCGGCTATAACCATGGAAGAGACGGGTGGGATCAATG
GCAGCGGCAGCAATAGCAGTCAGTGGGTGAGGCAGATGCGTTTGTTGCTT
TCCCCTTCCCTCCCACGCGACCTGTCGTGTCAATTTGTGGTCGAGACGGC
GGGGGTGCGAGGAGTGGGAGGAAGGGGAGTGGCGTTGGAGGAGGAAGGTT
GAGACCAAAGCCACACTCGTCGTGTCTCGCTTGGTTGTCCTGTGCTCGAC
GCCACATTCGGTGGGGGGCTACCTGGTCACGGCATAGTGGACATCTCGGG
CATGGCGGGTGCAGGGAAGACACAACTGATGCTCCAGTTGTTGGTCCAGC
AAGTGAAGGACGCAGAGAGCGAGTGGCGGAATGCGAATTATTCGACGCCG
TTTGTAGCGGGTCGTTCTTTTTATCTCTCGACCGAAGGTCCGCTCCCAGC
AAAGCGGCTTGCTGACATGGCCGCTGCTGCGTGCCCTGGAGACAGTGGCT
TCGCTCAGCGGGTGCTGGAGAGTGTGATTATCGTGGAGGCGAAGAATGTG
GAGGATCAGCTGTACCTTCTGACGACCCAATTGCCCTCTTTGCTGGCCGA
TTCTTCTCTTGATGTCAACAGCAACGACAACGACGACGCTTCTTAGGAAT
AATAATAATCCCGACCATCACGAGACAGGAGCGGTCGCGGGTCTGGACCT
CTTTCCTCGTCCTCCGCGCACGGCTTATGATTTGTATCGG

Synonyms

Publications