jgi.p|Nanoce1779_2|209781, mRNA_8593 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|209781
Unique NamemRNA_8593
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2334
Alignment locationscaffold_26:293675..296008 -

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Properties
Property NameValue
TranscriptId209867
TrackFilteredModels2
ProteinId209781
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:293675..296008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|209781gene_8593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|209781mRNA_8593-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8593CDS_8593Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8593 ID=mRNA_8593|Name=jgi.p|Nanoce1779_2|209781|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp
GGGTCGTAGCAAAGCAGGTGTGGGAGCTGGTGTCCAGCACATGTGAATTG
ATGGGATGTCATGGGTGTGGGTCGTGACGAAAAATGATGCTTGCCCCCCC
CACCCCCCAAAAATGTGATGCCCACTGCGACGCCACATACGTCTACTTGC
GCCACATATCCCCAGTCTATCATGGTTTGATACGCTACCTGTTGCGGGCT
GGCCTTTGCCATCGTAAGCTTTCTCTCCTCATTCCCTTCCGAGCAGCTCG
TCGTCATCGGTCCGAAGCCATCACATATTCAGCGAACACTCCGTCCGCGT
ATCCCAACCCACCCGCACATACACAGCAATGAAGTCAAGGAGAAGGGATG
ACGGTGAGCGTCGCCCGCGGGCCACAACCTGTCTCGTTTCTCTCCCCCTC
CTGCTGCTTCTCCTCCACCTACCCGCGCCCACCGCAGCCGTCGACGGTGG
TATCTCACCTCCTTTCACAACTCTAGATGCCGCCACGTTGTGGGATTTAT
CACAGCTCGATTTTACGGCAGCAAGGCAAGAGTTTCTGGCCCTACAACCG
GATCCTGATGTGTATGGGTATGATGGGCTGCTCGACAAGATCCGCGATGA
AGACACCCCGCATATGAAGAATCAGGTTTATTTGGATTGGACAGGCTCGG
CTGTATATCGTGCAAGCATGGTGGATGCCGTGGCCGAAGACCTTAAGAAG
AATTTGTATGGAAACACACATAGTATCAACCCAAGCTCTATGCTTACTGA
GAAGAAGGTCGATGAGGTCCGCGAGCGGATTGTTGATTTTTTCAATACGA
CCTTGTCTGAGTATAGTGTAATTTTTACCTCTGGAGCAACGGCAGCGTTA
CATTTATTGAGCGAGACGTTTCCGTGGTCGAATCGCAGTCGCTTTACATA
TCTCGAGCAAAGCCATAACAGTGTGCTGGGTATCCGTGAATTGTGCTTGC
ACAATGGTGGTGATTTTTGTGCCTTGAGAGAATGGGAAGTGAATGGGGAA
CGGCCTGAATCCTCCCAATGCAATTCTTGCGGGCGGACGGAATTGAATGC
TCCCAGCTACATAGCGGCGGCTGCCACTGCTGCCGCTGCCGCTGCCGCTG
CCTCTAGCTCGGGCGAGGGAGACAAAGCATCCTACCCCCGGGAGCCGTAT
CATTTATTTGCGTTCCCTGCACAAGATAACTTTGCTGGCATCAAATACAA
TCTGAGCTGGATCGACTACATCCAGAAAGCTGACAACGTGTGTGGAAAGC
GCGGTGATTGGCGTGTGTTACTTGACGCTGCGGCCTTTGTGCCTTCATCG
CGATTGGATTTGGGGAAGTTCAGTCCTGATTTCGTCACCTTGTCGTTTTA
TAAATTATTTGGAATTCCGACAGGTTTAGGATGCCTGCTTGTGCACAAGC
GCTCGATTGATATTCTGCGGAAGGTGTATTGGGGAGGGGGGTCAGTCGTA
GTCGCAATGACTCAGCAACCCATCACTGTCTTCAAGGGCAACCCTTGCGC
CAAGTATGAGGATGGGACGTTGAATTTCTTGTCCATCATAAACTTGAACG
CGGGCTTTGACTCCTTTGACGAGCTGGGGATCGACCGTATCACGCGCCAT
GTCTGGGCACTCACACAGTGGACGTACGAGCAACTCATGCTCTTAAAGCA
CAGCAATGGCCATCCGGTCGTCCGCGTCTACGGAAAGCACGGACAGGGTG
ATTCCAGCGTGCAGGGCGGAGTGATTAGCTTCAATGTGTTGCGGCCCGAT
GGGAGATATGTCGGCTACCATCAAGTGCAAAAGCTGGCGGCGAAAAACCG
CTTTCATGTCCGCTCCGGCTGTCAATGCAATCCGGGGGCGTGTTTTGACT
ATCTAGGACTTAGTTACGAACAGGTTAGCACATTTTTCCTCAATAAGGAG
TCGTGCGGTGATGAGAAGGATGTGGTAAATGGAGGGACTTTGCCTCTGGG
AGCCATCCGCATCTCTTTTGGTTCGCTGACGACCTTTGAGGACGTGCAGG
CTTGGATTGAATTCTTGAAGACGTTTTACGTTGATTCGGGGGAGATGGCC
GCATGGGGGGTGGAGGTGGGAATGCAAGAGAATGGCTTCAATGGTGGAGG
GCATTGGGCGATATTCGGGGACCAGACGGGTGCAAGAGTAGCATAGGAAT
AAGAAAAGCTCTGCGGCAAAAACCCATCGATGTGCACGCTGAGTGGTTAA
TGAATGAGAAGAACAACATGCGCGCTGCGTCGCTTGGGGACATTCCCAAA
TTAGACGAGAAATAGGCGGAATGACACACACACACATATGCACACAGAAA
GTAACCAAGTCCCAATCAGCAACGATCCAAACCA
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protein sequence of jgi.p|Nanoce1779_2|209781

>mRNA_8593-protein ID=mRNA_8593-protein|Name=jgi.p|Nanoce1779_2|209781|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MKSRRRDDGERRPRATTCLVSLPLLLLLLHLPAPTAAVDGGISPPFTTLD
AATLWDLSQLDFTAARQEFLALQPDPDVYGYDGLLDKIRDEDTPHMKNQV
YLDWTGSAVYRASMVDAVAEDLKKNLYGNTHSINPSSMLTEKKVDEVRER
IVDFFNTTLSEYSVIFTSGATAALHLLSETFPWSNRSRFTYLEQSHNSVL
GIRELCLHNGGDFCALREWEVNGERPESSQCNSCGRTELNAPSYIAAAAT
AAAAAAAASSSGEGDKASYPREPYHLFAFPAQDNFAGIKYNLSWIDYIQK
ADNVCGKRGDWRVLLDAAAFVPSSRLDLGKFSPDFVTLSFYKLFGIPTGL
GCLLVHKRSIDILRKVYWGGGSVVVAMTQQPITVFKGNPCAKYEDGTLNF
LSIINLNAGFDSFDELGIDRITRHVWALTQWTYEQLMLLKHSNGHPVVRV
YGKHGQGDSSVQGGVISFNVLRPDGRYVGYHQVQKLAAKNRFHVRSGCQC
NPGACFDYLGLSYEQVSTFFLNKESCGDEKDVVNGGTLPLGAIRISFGSL
TTFEDVQAWIEFLKTFYVDSGEMAAWGVEVGMQENGFNGGGHWAIFGDQT
GARVA*
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mRNA from alignment at scaffold_26:293675..296008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8593 ID=mRNA_8593|Name=jgi.p|Nanoce1779_2|209781|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp|location=Sequence derived from alignment at scaffold_26:293675..296008- (Nannochloropsis oceanica)
GGGTCGTAGCAAAGCAGGTGTGGGAGCTGGTGTCCAGCACATGTGAATTG
ATGGGATGTCATGGGTGTGGGTCGTGACGAAAAATGATGCTTGCCCCCCC
CACCCCCCAAAAATGTGATGCCCACTGCGACGCCACATACGTCTACTTGC
GCCACATATCCCCAGTCTATCATGGTTTGATACGCTACCTGTTGCGGGCT
GGCCTTTGCCATCGTAAGCTTTCTCTCCTCATTCCCTTCCGAGCAGCTCG
TCGTCATCGGTCCGAAGCCATCACATATTCAGCGAACACTCCGTCCGCGT
ATCCCAACCCACCCGCACATACACAGCAATGAAGTCAAGGAGAAGGGATG
ACGGTGAGCGTCGCCCGCGGGCCACAACCTGTCTCGTTTCTCTCCCCCTC
CTGCTGCTTCTCCTCCACCTACCCGCGCCCACCGCAGCCGTCGACGGTGG
TATCTCACCTCCTTTCACAACTCTAGATGCCGCCACGTTGTGGGATTTAT
CACAGCTCGATTTTACGGCAGCAAGGCAAGAGTTTCTGGCCCTACAACCG
GATCCTGATGTGTATGGGTATGATGGGCTGCTCGACAAGATCCGCGATGA
AGACACCCCGCATATGAAGAATCAGGTTTATTTGGATTGGACAGGCTCGG
CTGTATATCGTGCAAGCATGGTGGATGCCGTGGCCGAAGACCTTAAGAAG
AATTTGTATGGAAACACACATAGTATCAACCCAAGCTCTATGCTTACTGA
GAAGAAGGTCGATGAGGTCCGCGAGCGGATTGTTGATTTTTTCAATACGA
CCTTGTCTGAGTATAGTGTAATTTTTACCTCTGGAGCAACGGCAGCGTTA
CATTTATTGAGCGAGACGTTTCCGTGGTCGAATCGCAGTCGCTTTACATA
TCTCGAGCAAAGCCATAACAGTGTGCTGGGTATCCGTGAATTGTGCTTGC
ACAATGGTGGTGATTTTTGTGCCTTGAGAGAATGGGAAGTGAATGGGGAA
CGGCCTGAATCCTCCCAATGCAATTCTTGCGGGCGGACGGAATTGAATGC
TCCCAGCTACATAGCGGCGGCTGCCACTGCTGCCGCTGCCGCTGCCGCTG
CCTCTAGCTCGGGCGAGGGAGACAAAGCATCCTACCCCCGGGAGCCGTAT
CATTTATTTGCGTTCCCTGCACAAGATAACTTTGCTGGCATCAAATACAA
TCTGAGCTGGATCGACTACATCCAGAAAGCTGACAACGTGTGTGGAAAGC
GCGGTGATTGGCGTGTGTTACTTGACGCTGCGGCCTTTGTGCCTTCATCG
CGATTGGATTTGGGGAAGTTCAGTCCTGATTTCGTCACCTTGTCGTTTTA
TAAATTATTTGGAATTCCGACAGGTTTAGGATGCCTGCTTGTGCACAAGC
GCTCGATTGATATTCTGCGGAAGGTGTATTGGGGAGGGGGGTCAGTCGTA
GTCGCAATGACTCAGCAACCCATCACTGTCTTCAAGGGCAACCCTTGCGC
CAAGTATGAGGATGGGACGTTGAATTTCTTGTCCATCATAAACTTGAACG
CGGGCTTTGACTCCTTTGACGAGCTGGGGATCGACCGTATCACGCGCCAT
GTCTGGGCACTCACACAGTGGACGTACGAGCAACTCATGCTCTTAAAGCA
CAGCAATGGCCATCCGGTCGTCCGCGTCTACGGAAAGCACGGACAGGGTG
ATTCCAGCGTGCAGGGCGGAGTGATTAGCTTCAATGTGTTGCGGCCCGAT
GGGAGATATGTCGGCTACCATCAAGTGCAAAAGCTGGCGGCGAAAAACCG
CTTTCATGTCCGCTCCGGCTGTCAATGCAATCCGGGGGCGTGTTTTGACT
ATCTAGGACTTAGTTACGAACAGGTTAGCACATTTTTCCTCAATAAGGAG
TCGTGCGGTGATGAGAAGGATGTGGTAAATGGAGGGACTTTGCCTCTGGG
AGCCATCCGCATCTCTTTTGGTTCGCTGACGACCTTTGAGGACGTGCAGG
CTTGGATTGAATTCTTGAAGACGTTTTACGTTGATTCGGGGGAGATGGCC
GCATGGGGGGTGGAGGTGGGAATGCAAGAGAATGGCTTCAATGGTGGAGG
GCATTGGGCGATATTCGGGGACCAGACGGGTGCAAGAGTAGCATAGGAAT
AAGAAAAGCTCTGCGGCAAAAACCCATCGATGTGCACGCTGAGTGGTTAA
TGAATGAGAAGAACAACATGCGCGCTGCGTCGCTTGGGGACATTCCCAAA
TTAGACGAGAAATAGGCGGAATGACACACACACACATATGCACACAGAAA
GTAACCAAGTCCCAATCAGCAACGATCCAAACCA
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Coding sequence (CDS) from alignment at scaffold_26:293675..296008-

>mRNA_8593 ID=mRNA_8593|Name=jgi.p|Nanoce1779_2|209781|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_26:293675..296008- (Nannochloropsis oceanica)
ATGAAGTCAAGGAGAAGGGATGACGGTGAGCGTCGCCCGCGGGCCACAAC
CTGTCTCGTTTCTCTCCCCCTCCTGCTGCTTCTCCTCCACCTACCCGCGC
CCACCGCAGCCGTCGACGGTGGTATCTCACCTCCTTTCACAACTCTAGAT
GCCGCCACGTTGTGGGATTTATCACAGCTCGATTTTACGGCAGCAAGGCA
AGAGTTTCTGGCCCTACAACCGGATCCTGATGTGTATGGGTATGATGGGC
TGCTCGACAAGATCCGCGATGAAGACACCCCGCATATGAAGAATCAGGTT
TATTTGGATTGGACAGGCTCGGCTGTATATCGTGCAAGCATGGTGGATGC
CGTGGCCGAAGACCTTAAGAAGAATTTGTATGGAAACACACATAGTATCA
ACCCAAGCTCTATGCTTACTGAGAAGAAGGTCGATGAGGTCCGCGAGCGG
ATTGTTGATTTTTTCAATACGACCTTGTCTGAGTATAGTGTAATTTTTAC
CTCTGGAGCAACGGCAGCGTTACATTTATTGAGCGAGACGTTTCCGTGGT
CGAATCGCAGTCGCTTTACATATCTCGAGCAAAGCCATAACAGTGTGCTG
GGTATCCGTGAATTGTGCTTGCACAATGGTGGTGATTTTTGTGCCTTGAG
AGAATGGGAAGTGAATGGGGAACGGCCTGAATCCTCCCAATGCAATTCTT
GCGGGCGGACGGAATTGAATGCTCCCAGCTACATAGCGGCGGCTGCCACT
GCTGCCGCTGCCGCTGCCGCTGCCTCTAGCTCGGGCGAGGGAGACAAAGC
ATCCTACCCCCGGGAGCCGTATCATTTATTTGCGTTCCCTGCACAAGATA
ACTTTGCTGGCATCAAATACAATCTGAGCTGGATCGACTACATCCAGAAA
GCTGACAACGTGTGTGGAAAGCGCGGTGATTGGCGTGTGTTACTTGACGC
TGCGGCCTTTGTGCCTTCATCGCGATTGGATTTGGGGAAGTTCAGTCCTG
ATTTCGTCACCTTGTCGTTTTATAAATTATTTGGAATTCCGACAGGTTTA
GGATGCCTGCTTGTGCACAAGCGCTCGATTGATATTCTGCGGAAGGTGTA
TTGGGGAGGGGGGTCAGTCGTAGTCGCAATGACTCAGCAACCCATCACTG
TCTTCAAGGGCAACCCTTGCGCCAAGTATGAGGATGGGACGTTGAATTTC
TTGTCCATCATAAACTTGAACGCGGGCTTTGACTCCTTTGACGAGCTGGG
GATCGACCGTATCACGCGCCATGTCTGGGCACTCACACAGTGGACGTACG
AGCAACTCATGCTCTTAAAGCACAGCAATGGCCATCCGGTCGTCCGCGTC
TACGGAAAGCACGGACAGGGTGATTCCAGCGTGCAGGGCGGAGTGATTAG
CTTCAATGTGTTGCGGCCCGATGGGAGATATGTCGGCTACCATCAAGTGC
AAAAGCTGGCGGCGAAAAACCGCTTTCATGTCCGCTCCGGCTGTCAATGC
AATCCGGGGGCGTGTTTTGACTATCTAGGACTTAGTTACGAACAGGTTAG
CACATTTTTCCTCAATAAGGAGTCGTGCGGTGATGAGAAGGATGTGGTAA
ATGGAGGGACTTTGCCTCTGGGAGCCATCCGCATCTCTTTTGGTTCGCTG
ACGACCTTTGAGGACGTGCAGGCTTGGATTGAATTCTTGAAGACGTTTTA
CGTTGATTCGGGGGAGATGGCCGCATGGGGGGTGGAGGTGGGAATGCAAG
AGAATGGCTTCAATGGTGGAGGGCATTGGGCGATATTCGGGGACCAGACG
GGTGCAAGAGTAGCATAG
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Synonyms
Publications