jgi.p|Nanoce1779_2|603267, mRNA_8592 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603267
Unique Name	mRNA_8592
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1939
Alignment location	scaffold_26:291730..293668 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603353
Track	FilteredModels2
ProteinId	603267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:291730..293668 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603267	gene_8592	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603267	mRNA_8592-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8592	CDS_8592	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:291730..293668+
coding sequence from alignment at scaffold_26:291730..293668+

mRNA sequence

>mRNA_8592 ID=mRNA_8592|Name=jgi.p|Nanoce1779_2|603267|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp
CTCTCTCCTGCGGCTCCTGCGGATTGCCCTGTGTCTTTTTAAGCGTACTC
TGTGAGCGTGTAGGACGGATTAAAGGTGTTGGTGAGTGGTGGCAAGGGTG
GAGAATCAGAGCTGAATCTAAATTCTGTCGTTGCTTGCGCAGAGATGTAC
GACGAGTGTATGACTCAAAAACGGGCCGCAATACAAGCAAAGGCACTGAA
TACATGCAAGGCTTTGGTTTTCCTGGCCATCGGCATGATGCTTGTTTGTA
AAACGTGTGTGTAGGTTGTTCTTGTACTAGTCCGCACACCGACATGGACC
ATGTCCTTTCCCGCCTACGACGTCATGATCGCCTATCGCACGGCGCCAGT
GCCTTGAGGCAGGCTCCAGCTAGGAGGCTGAGAATGCGAAAACCCTGCTC
CTGTCTTACTGGTTGGAAGAGCGCATGAAAGCCTTGCATGGGTCAGGTTA
AGTTTGCTCCGAATGTGGGTAGCCGTGCGTTGGTCATGTGAAGAGCGAGG
CGGGGTTTCGACCTCAGGAACTATTCATCCGATGAGAGACTCGCTTGATT
GGGTCTCGCACGAGACCTCGTGCATCGGTGATCAGTGTCTTGACGGTGTT
TTTTTATTAACACGCTCTCCCACCACACCACACTCACCCCTCACTACAAG
CAAGGGCTTTCTTTGCATGGACGCGAGCCGCCGCTTCGTCCGCTGTGCGA
TTGTTAAAATTAATCCACACCGTCTCCCTTCTGCCTCCCTTCACGTTCAA
CAGGCAGCGCTCACACCATCTCGAAACCACCAATGTTATCTTCCAAGCTG
ACTGACCTGGTCACGGACCTGGCCGTCAAACTGGAGAAAGTCTGCGACCC
TTCGCACCTGGATGCAGCTCGAGCGCAAGACTTACTGGGCGATCTGGAGG
AAATCGATATGACCGTCGACCTGCTGAAGCTGAGCAAGGCCGGGTTTGCC
GTCAAGAAGTGCAAGGCGGTCAAGGCGGAGGCGGGGATTTTCGATGCCGT
GAATGAACGGGCGGGGTTGCTGCTGAAGAAGTGGAAGAAAGTGGTGGCGT
CTCCCGCAGGGATAGGGGGAAGGGATGGGGCCAGCAGTAGCAGCAGCAGC
AACAACAATGGGGGAGGTCTCCTCGAGTCACATTCCACCGGTTCCGCAGG
CAGCGTCGCCGCCGACACTAGCAGCAACGATAGTGGCACACGGAAGGCCA
TATCTGGCAGCGCTGTGTCCTCATCCTCTTCTTCCGCGGCTGCCCCACCA
GCATCATCACAACCTCCTGCCGGCCCTCCCACAGTCATCTCCTACCTTGC
CCAATCCGAAGCAGCTGCTTTGGACTTGCCTCCAGCCCGTCTCAAGATTG
CGAATCTCTTCCTCGCGCTATTCCTCAAGTACCCCGAAGGACAAGAAGAC
GCGTCTCGGGCCGCGCGGGTGGCGGTGGACATTGAACAAGCCATGCAAGA
TGTCGCGGATTACCGAAACGCCAGCAAACAATACGGTGATAAAGCGCGCT
CTTTGAAGTATAATTTGGACACTAATGAGCACTTGCGCTTGAGGGTGGTG
TTGGGTGATTTGCGTCCGTTGACGTTGGTTGGAATGAAGCCTGAAGACAT
GCAGCCGGAAGAGCATCGACAAGCTGCCGAAGCTGCTGCGGCATTGGCGT
ACGAAGCAAATTTGTTGGATTGGCAGGATAAGAATGCGGACAAGATTCGT
GCAAAACTGGGAATCGAGGATGTTGGGGGTTCCTTCACTTGTGGGCGATG
CAAGGGTAATAAAACGTCTTACCAGGCGAAGCAGACGCGGTCATCGGACG
AGCCCATGACCATGTTTGTACGGTGCTTAATGTGTGGGAATCGGTGGAAG
GAGTAAAGGAGAGGAAGTTGGATGTTTAAAGAAGAGAACCGGGTGCGGAA
CGACGGCAGAGAGAGGGGAGTGAAGCGCGGGAGTGGAGA

protein sequence of jgi.p|Nanoce1779_2|603267

>mRNA_8592-protein ID=mRNA_8592-protein|Name=jgi.p|Nanoce1779_2|603267|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MLSSKLTDLVTDLAVKLEKVCDPSHLDAARAQDLLGDLEEIDMTVDLLKL
SKAGFAVKKCKAVKAEAGIFDAVNERAGLLLKKWKKVVASPAGIGGRDGA
SSSSSSNNNGGGLLESHSTGSAGSVAADTSSNDSGTRKAISGSAVSSSSS
SAAAPPASSQPPAGPPTVISYLAQSEAAALDLPPARLKIANLFLALFLKY
PEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEH
LRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDK
NADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLM
CGNRWKE*

mRNA from alignment at scaffold_26:291730..293668+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8592 ID=mRNA_8592|Name=jgi.p|Nanoce1779_2|603267|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp|location=Sequence derived from alignment at scaffold_26:291730..293668+ (Nannochloropsis oceanica)
CTCTCTCCTGCGGCTCCTGCGGATTGCCCTGTGTCTTTTTAAGCGTACTC
TGTGAGCGTGTAGGACGGATTAAAGGTGTTGGTGAGTGGTGGCAAGGGTG
GAGAATCAGAGCTGAATCTAAATTCTGTCGTTGCTTGCGCAGAGATGTAC
GACGAGTGTATGACTCAAAAACGGGCCGCAATACAAGCAAAGGCACTGAA
TACATGCAAGGCTTTGGTTTTCCTGGCCATCGGCATGATGCTTGTTTGTA
AAACGTGTGTGTAGGTTGTTCTTGTACTAGTCCGCACACCGACATGGACC
ATGTCCTTTCCCGCCTACGACGTCATGATCGCCTATCGCACGGCGCCAGT
GCCTTGAGGCAGGCTCCAGCTAGGAGGCTGAGAATGCGAAAACCCTGCTC
CTGTCTTACTGGTTGGAAGAGCGCATGAAAGCCTTGCATGGGTCAGGTTA
AGTTTGCTCCGAATGTGGGTAGCCGTGCGTTGGTCATGTGAAGAGCGAGG
CGGGGTTTCGACCTCAGGAACTATTCATCCGATGAGAGACTCGCTTGATT
GGGTCTCGCACGAGACCTCGTGCATCGGTGATCAGTGTCTTGACGGTGTT
TTTTTATTAACACGCTCTCCCACCACACCACACTCACCCCTCACTACAAG
CAAGGGCTTTCTTTGCATGGACGCGAGCCGCCGCTTCGTCCGCTGTGCGA
TTGTTAAAATTAATCCACACCGTCTCCCTTCTGCCTCCCTTCACGTTCAA
CAGGCAGCGCTCACACCATCTCGAAACCACCAATGTTATCTTCCAAGCTG
ACTGACCTGGTCACGGACCTGGCCGTCAAACTGGAGAAAGTCTGCGACCC
TTCGCACCTGGATGCAGCTCGAGCGCAAGACTTACTGGGCGATCTGGAGG
AAATCGATATGACCGTCGACCTGCTGAAGCTGAGCAAGGCCGGGTTTGCC
GTCAAGAAGTGCAAGGCGGTCAAGGCGGAGGCGGGGATTTTCGATGCCGT
GAATGAACGGGCGGGGTTGCTGCTGAAGAAGTGGAAGAAAGTGGTGGCGT
CTCCCGCAGGGATAGGGGGAAGGGATGGGGCCAGCAGTAGCAGCAGCAGC
AACAACAATGGGGGAGGTCTCCTCGAGTCACATTCCACCGGTTCCGCAGG
CAGCGTCGCCGCCGACACTAGCAGCAACGATAGTGGCACACGGAAGGCCA
TATCTGGCAGCGCTGTGTCCTCATCCTCTTCTTCCGCGGCTGCCCCACCA
GCATCATCACAACCTCCTGCCGGCCCTCCCACAGTCATCTCCTACCTTGC
CCAATCCGAAGCAGCTGCTTTGGACTTGCCTCCAGCCCGTCTCAAGATTG
CGAATCTCTTCCTCGCGCTATTCCTCAAGTACCCCGAAGGACAAGAAGAC
GCGTCTCGGGCCGCGCGGGTGGCGGTGGACATTGAACAAGCCATGCAAGA
TGTCGCGGATTACCGAAACGCCAGCAAACAATACGGTGATAAAGCGCGCT
CTTTGAAGTATAATTTGGACACTAATGAGCACTTGCGCTTGAGGGTGGTG
TTGGGTGATTTGCGTCCGTTGACGTTGGTTGGAATGAAGCCTGAAGACAT
GCAGCCGGAAGAGCATCGACAAGCTGCCGAAGCTGCTGCGGCATTGGCGT
ACGAAGCAAATTTGTTGGATTGGCAGGATAAGAATGCGGACAAGATTCGT
GCAAAACTGGGAATCGAGGATGTTGGGGGTTCCTTCACTTGTGGGCGATG
CAAGGGTAATAAAACGTCTTACCAGGCGAAGCAGACGCGGTCATCGGACG
AGCCCATGACCATGTTTGTACGGTGCTTAATGTGTGGGAATCGGTGGAAG
GAGTAAAGGAGAGGAAGTTGGATGTTTAAAGAAGAGAACCGGGTGCGGAA
CGACGGCAGAGAGAGGGGAGTGAAGCGCGGGAGTGGAGA

Coding sequence (CDS) from alignment at scaffold_26:291730..293668+

>mRNA_8592 ID=mRNA_8592|Name=jgi.p|Nanoce1779_2|603267|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_26:291730..293668+ (Nannochloropsis oceanica)
ATGTTATCTTCCAAGCTGACTGACCTGGTCACGGACCTGGCCGTCAAACT
GGAGAAAGTCTGCGACCCTTCGCACCTGGATGCAGCTCGAGCGCAAGACT
TACTGGGCGATCTGGAGGAAATCGATATGACCGTCGACCTGCTGAAGCTG
AGCAAGGCCGGGTTTGCCGTCAAGAAGTGCAAGGCGGTCAAGGCGGAGGC
GGGGATTTTCGATGCCGTGAATGAACGGGCGGGGTTGCTGCTGAAGAAGT
GGAAGAAAGTGGTGGCGTCTCCCGCAGGGATAGGGGGAAGGGATGGGGCC
AGCAGTAGCAGCAGCAGCAACAACAATGGGGGAGGTCTCCTCGAGTCACA
TTCCACCGGTTCCGCAGGCAGCGTCGCCGCCGACACTAGCAGCAACGATA
GTGGCACACGGAAGGCCATATCTGGCAGCGCTGTGTCCTCATCCTCTTCT
TCCGCGGCTGCCCCACCAGCATCATCACAACCTCCTGCCGGCCCTCCCAC
AGTCATCTCCTACCTTGCCCAATCCGAAGCAGCTGCTTTGGACTTGCCTC
CAGCCCGTCTCAAGATTGCGAATCTCTTCCTCGCGCTATTCCTCAAGTAC
CCCGAAGGACAAGAAGACGCGTCTCGGGCCGCGCGGGTGGCGGTGGACAT
TGAACAAGCCATGCAAGATGTCGCGGATTACCGAAACGCCAGCAAACAAT
ACGGTGATAAAGCGCGCTCTTTGAAGTATAATTTGGACACTAATGAGCAC
TTGCGCTTGAGGGTGGTGTTGGGTGATTTGCGTCCGTTGACGTTGGTTGG
AATGAAGCCTGAAGACATGCAGCCGGAAGAGCATCGACAAGCTGCCGAAG
CTGCTGCGGCATTGGCGTACGAAGCAAATTTGTTGGATTGGCAGGATAAG
AATGCGGACAAGATTCGTGCAAAACTGGGAATCGAGGATGTTGGGGGTTC
CTTCACTTGTGGGCGATGCAAGGGTAATAAAACGTCTTACCAGGCGAAGC
AGACGCGGTCATCGGACGAGCCCATGACCATGTTTGTACGGTGCTTAATG
TGTGGGAATCGGTGGAAGGAGTAA

Synonyms

Publications