jgi.p|Nanoce1779_2|209786, mRNA_8590 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|209786
Unique Name	mRNA_8590
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1612
Alignment location	scaffold_26:287939..289550 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	209872
Track	FilteredModels2
ProteinId	209786

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:287939..289550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|209786	gene_8590	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|209786	mRNA_8590-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8590	CDS_8590	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:287939..289550+
coding sequence from alignment at scaffold_26:287939..289550+

mRNA sequence

>mRNA_8590 ID=mRNA_8590|Name=jgi.p|Nanoce1779_2|209786|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp
TTCCGAGACAAGCTCCACCATTTTCACACAAATGTTCAGCTATGCACTTG
TTTCTCGTCCCCCGTCTTTCCGTTCATTCTTCCTCAAATTATAATCTCCA
CACAACTCTCTCTCCCTCCCAACCCCGAACAGGATTGTCGCCCGGTCGTC
GTCTCAGCCATGGCATTCTACAACCACCGCCTCCGCCCTCGTCGCGCAAT
GGCCCTCCGCAGTCTGATTTTTGTTTTACTCGTCACTCTGCTCTGCACAT
TCGCCAATGGCAGCAGCAGTGGAGCGATGGTAGAACAGGAGACCGAGGTC
ATGCGCGAGCTCGCCGACAAGGCCCCCCGCCCCACCCGTGTGCCCTTTAC
GCGCCGCCCGACTGTCGCGCGAGTACCCCGGACCAAGGCTCCCACCTTCA
ATGATCCTACCCCCCAGCCTCCCGATCTTGGTCCTGGTGGGGTGGTTGTG
GGAGGAGGGGGAGCAGAGGAGGAAGGACAGCATTACGTCCCCACTCCGCC
CCCCACAACTAGGGTGCCTCCTCCCGAGTCAGGAAAGGAAGCTTCTGGTG
GAGCAGTTACGGCCTTAATACCCTCGCTTAAGGATAATAAACCTTTAATT
TATGGCGGCGTAGGTGCTGCACTGCTGATTGTTGTGTTAGTCAGCATTTT
CCTTGTTGTTCGCGCCTTACGTCGTCCCTTTACTTCAACCGCTGCTCTCG
CTGCCGCTACTGCCACTCATTCCTCCTATAATTGCACTAGCAATACTCGT
GATGGATTTAACATAGAGGATTTGGCATCTCCGGACGTCTATACCCTTTC
GCCTAGCTCCTCCACCCTGCCCCGCTCCCACTCCATCAATTCCTCCTCCT
CCGTCCATTCTTCCTCCTCCTATGGAGGAAGTAATGCTGGCTCCCCTATA
AATGGCATGAGCACCGGTCTACGTGCCTCTGGTGAAGGTCTCAACTACGC
CTCCGTCACCTTTAAGCAGCAGCTATCCATGCCCAAGCAACCGCAGCAGA
ATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCAGCAGCAACACCAGCAG
CAGCAGCGAAGAGGACATGCTTCTGCCTCGCCGCAGTTGCATTCCCGTTC
TCCTCCTTTTAACCTCCCTGCTTCTAGTTCTCCTTCTTCCCCTCCCGTCG
TAAAAGCTGTCGAAAAACAAGGAAAATCTCCCCCACCTCCCCCTCCCCCT
CCATCCCTCCCTCCCCTTCCCTCCCCCACCATGAACTCGGCTCCTAAGGC
CACCACTTTGCCTCCTGCTCCTCTCCACTCACCCCCCCCTGTCGTCCGGC
AACAACGACAACAAAGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGGGCGCCAAGCCCGGTGGCGAAGGGAAAGAGGCA
GTTTACCGAAAGTGTGATGATTCAGGAAGGGGAAGGTGATGATGGGAAGA
GTGGCTTTTAAGAAGCCAAATGAGCAGTGATTGTAGTGACAGCACCAGAT
GGGGAAGAAGAATGAGTGGAGGGGGGGGGGGAGAGAGCATAAAGAAAAGG
AGAGCAAAAGAAGAAGGGAGGAAGAGAGGGTGGAGGAAAGGACGGAGAAT
GAGGAGCAGTCT

protein sequence of jgi.p|Nanoce1779_2|209786

>mRNA_8590-protein ID=mRNA_8590-protein|Name=jgi.p|Nanoce1779_2|209786|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MAFYNHRLRPRRAMALRSLIFVLLVTLLCTFANGSSSGAMVEQETEVMRE
LADKAPRPTRVPFTRRPTVARVPRTKAPTFNDPTPQPPDLGPGGVVVGGG
GAEEEGQHYVPTPPPTTRVPPPESGKEASGGAVTALIPSLKDNKPLIYGG
VGAALLIVVLVSIFLVVRALRRPFTSTAALAAATATHSSYNCTSNTRDGF
NIEDLASPDVYTLSPSSSTLPRSHSINSSSSVHSSSSYGGSNAGSPINGM
STGLRASGEGLNYASVTFKQQLSMPKQPQQNQQQQQQQQQHQQQHQQQQR
RGHASASPQLHSRSPPFNLPASSSPSSPPVVKAVEKQGKSPPPPPPPPSL
PPLPSPTMNSAPKATTLPPAPLHSPPPVVRQQRQQSQQQQQQQQQQQQQQ
QQRAPSPVAKGKRQFTESVMIQEGEGDDGKSGF*

mRNA from alignment at scaffold_26:287939..289550+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8590 ID=mRNA_8590|Name=jgi.p|Nanoce1779_2|209786|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at scaffold_26:287939..289550+ (Nannochloropsis oceanica)
TTCCGAGACAAGCTCCACCATTTTCACACAAATGTTCAGCTATGCACTTG
TTTCTCGTCCCCCGTCTTTCCGTTCATTCTTCCTCAAATTATAATCTCCA
CACAACTCTCTCTCCCTCCCAACCCCGAACAGGATTGTCGCCCGGTCGTC
GTCTCAGCCATGGCATTCTACAACCACCGCCTCCGCCCTCGTCGCGCAAT
GGCCCTCCGCAGTCTGATTTTTGTTTTACTCGTCACTCTGCTCTGCACAT
TCGCCAATGGCAGCAGCAGTGGAGCGATGGTAGAACAGGAGACCGAGGTC
ATGCGCGAGCTCGCCGACAAGGCCCCCCGCCCCACCCGTGTGCCCTTTAC
GCGCCGCCCGACTGTCGCGCGAGTACCCCGGACCAAGGCTCCCACCTTCA
ATGATCCTACCCCCCAGCCTCCCGATCTTGGTCCTGGTGGGGTGGTTGTG
GGAGGAGGGGGAGCAGAGGAGGAAGGACAGCATTACGTCCCCACTCCGCC
CCCCACAACTAGGGTGCCTCCTCCCGAGTCAGGAAAGGAAGCTTCTGGTG
GAGCAGTTACGGCCTTAATACCCTCGCTTAAGGATAATAAACCTTTAATT
TATGGCGGCGTAGGTGCTGCACTGCTGATTGTTGTGTTAGTCAGCATTTT
CCTTGTTGTTCGCGCCTTACGTCGTCCCTTTACTTCAACCGCTGCTCTCG
CTGCCGCTACTGCCACTCATTCCTCCTATAATTGCACTAGCAATACTCGT
GATGGATTTAACATAGAGGATTTGGCATCTCCGGACGTCTATACCCTTTC
GCCTAGCTCCTCCACCCTGCCCCGCTCCCACTCCATCAATTCCTCCTCCT
CCGTCCATTCTTCCTCCTCCTATGGAGGAAGTAATGCTGGCTCCCCTATA
AATGGCATGAGCACCGGTCTACGTGCCTCTGGTGAAGGTCTCAACTACGC
CTCCGTCACCTTTAAGCAGCAGCTATCCATGCCCAAGCAACCGCAGCAGA
ATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCAGCAGCAACACCAGCAG
CAGCAGCGAAGAGGACATGCTTCTGCCTCGCCGCAGTTGCATTCCCGTTC
TCCTCCTTTTAACCTCCCTGCTTCTAGTTCTCCTTCTTCCCCTCCCGTCG
TAAAAGCTGTCGAAAAACAAGGAAAATCTCCCCCACCTCCCCCTCCCCCT
CCATCCCTCCCTCCCCTTCCCTCCCCCACCATGAACTCGGCTCCTAAGGC
CACCACTTTGCCTCCTGCTCCTCTCCACTCACCCCCCCCTGTCGTCCGGC
AACAACGACAACAAAGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGGGCGCCAAGCCCGGTGGCGAAGGGAAAGAGGCA
GTTTACCGAAAGTGTGATGATTCAGGAAGGGGAAGGTGATGATGGGAAGA
GTGGCTTTTAAGAAGCCAAATGAGCAGTGATTGTAGTGACAGCACCAGAT
GGGGAAGAAGAATGAGTGGAGGGGGGGGGGGAGAGAGCATAAAGAAAAGG
AGAGCAAAAGAAGAAGGGAGGAAGAGAGGGTGGAGGAAAGGACGGAGAAT
GAGGAGCAGTCT

Coding sequence (CDS) from alignment at scaffold_26:287939..289550+

>mRNA_8590 ID=mRNA_8590|Name=jgi.p|Nanoce1779_2|209786|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_26:287939..289550+ (Nannochloropsis oceanica)
ATGGCATTCTACAACCACCGCCTCCGCCCTCGTCGCGCAATGGCCCTCCG
CAGTCTGATTTTTGTTTTACTCGTCACTCTGCTCTGCACATTCGCCAATG
GCAGCAGCAGTGGAGCGATGGTAGAACAGGAGACCGAGGTCATGCGCGAG
CTCGCCGACAAGGCCCCCCGCCCCACCCGTGTGCCCTTTACGCGCCGCCC
GACTGTCGCGCGAGTACCCCGGACCAAGGCTCCCACCTTCAATGATCCTA
CCCCCCAGCCTCCCGATCTTGGTCCTGGTGGGGTGGTTGTGGGAGGAGGG
GGAGCAGAGGAGGAAGGACAGCATTACGTCCCCACTCCGCCCCCCACAAC
TAGGGTGCCTCCTCCCGAGTCAGGAAAGGAAGCTTCTGGTGGAGCAGTTA
CGGCCTTAATACCCTCGCTTAAGGATAATAAACCTTTAATTTATGGCGGC
GTAGGTGCTGCACTGCTGATTGTTGTGTTAGTCAGCATTTTCCTTGTTGT
TCGCGCCTTACGTCGTCCCTTTACTTCAACCGCTGCTCTCGCTGCCGCTA
CTGCCACTCATTCCTCCTATAATTGCACTAGCAATACTCGTGATGGATTT
AACATAGAGGATTTGGCATCTCCGGACGTCTATACCCTTTCGCCTAGCTC
CTCCACCCTGCCCCGCTCCCACTCCATCAATTCCTCCTCCTCCGTCCATT
CTTCCTCCTCCTATGGAGGAAGTAATGCTGGCTCCCCTATAAATGGCATG
AGCACCGGTCTACGTGCCTCTGGTGAAGGTCTCAACTACGCCTCCGTCAC
CTTTAAGCAGCAGCTATCCATGCCCAAGCAACCGCAGCAGAATCAGCAGC
AGCAGCAGCAGCAGCAGCAACACCAGCAGCAACACCAGCAGCAGCAGCGA
AGAGGACATGCTTCTGCCTCGCCGCAGTTGCATTCCCGTTCTCCTCCTTT
TAACCTCCCTGCTTCTAGTTCTCCTTCTTCCCCTCCCGTCGTAAAAGCTG
TCGAAAAACAAGGAAAATCTCCCCCACCTCCCCCTCCCCCTCCATCCCTC
CCTCCCCTTCCCTCCCCCACCATGAACTCGGCTCCTAAGGCCACCACTTT
GCCTCCTGCTCCTCTCCACTCACCCCCCCCTGTCGTCCGGCAACAACGAC
AACAAAGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGGGCGCCAAGCCCGGTGGCGAAGGGAAAGAGGCAGTTTACCGA
AAGTGTGATGATTCAGGAAGGGGAAGGTGATGATGGGAAGAGTGGCTTTT
AA

Synonyms

Publications