jgi.p|Nanoce1779_2|574401, mRNA_859 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574401
Unique Name	mRNA_859
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1517
Alignment location	scaffold_2:598039..600101 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574487
Track	FilteredModels2
ProteinId	574401

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:598039..600101 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574401	gene_859	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574401	mRNA_859-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_859	CDS_859	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:598039..600101+
coding sequence from alignment at scaffold_2:598039..600101+

mRNA sequence

>mRNA_859 ID=mRNA_859|Name=jgi.p|Nanoce1779_2|574401|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
CAGACCAACTGTAAGCCATGGGAGACTCGTGGGAAGACGATGACTTTACG
CCAGTTCTGCCACAGGCGGTGATCTTGCCTACCAAGGCGGCTTGGGAAGA
CGAGGACTTGCCCGACGACCCGAATTTCGGCAAGACTCCCGAGCAAATCG
CCACCGAAGCCGCGCAAAAGAGAAAAGCAGAGGAACTCCGTCAGGCTAAG
GCCGCAAAAGATGCAGAGCGTGCCACTCTCCGACGAGCAGCAGAAGAAGA
AGCGGCGTTAATGGCCAAGGAGACCCCAGAGGAACGGGCCTTACGGGAGC
GGAAGGCTGTGGAGAGGTCGGACCACGCGATGGCGGATGAGTTGTTTGGG
GGGCCAGGGCTAGACGGGGAGCAGCAACCAGGCAGTAGGCCGGCTTCCTC
TCTTAGTTTGTCGTCTACAATTTCTTCGTCGGCTTTGGGAGGGAGCAAGA
AGGCGGGCGCCGTATCCTTCGCGAGCCTCAATTCCCCGGGAGATTTCACG
CTCCTTGCCAAGGACCTGGCCCCTAAATTCAAAAAGGCCGCCAGCAGCAA
GGACGTCACCAGCTTTGTCTCAGAGCTGCTCGCCAGGGGAGCTAAGGACC
CCGTGGGCGTGGAAGACCTTAACGAGTTGATCAAAAATCTGCAGTCCCTG
GCCGTGGAGAAACAGAGGCAGGCCGACGCGAACCGGAACAAGATCGGGCA
GAAGCAGAAGGCGCTGGCGGCGAAGAAGAGGGAGCATAAGGCGACAGCCG
CCAAGCACAAGGAGCTGTTTGGGGATGATTTTGATGGGGCGGATCCGGAT
ATGGACCAGTACTATGATATGGAGGATGTGAGTAGAAAGGGAGGGAGGAA
GGGAGGGAGAGTGGGAGGGAAGGGTCGCCGCGCAGGGACAGTGCTATACT
TGTGATGTGTGCTTTCGCACTCAGCCTTTTTATTCACGCCTAGATCCCTC
TTTTCTTCTCTTCTTATTTCCCGCTCTCGGGCGCACCCACAGGAGTTCAT
GTGAAGCCCCGGGAGCCAAGCAAACAAGGCGAGCCGTCACACTCAGCTTG
GGGACGACGGATTACCACTACCACCACCACCAGCAGCATCATTATCCAGT
CACAAGGGGAGACAATTGTGAGGGTCAGAGGCAGAGACGTTCACGAGCGA
AGAAAGCGCGCGAGGCCCACGATGGTGTGTCAACGTGCAAGGAATATAGG
GATGGAGGGAGGGTGGGAGGAAGGAAGGGAGGAATTTTGTATTTTGTCGA
TGGAGATGGCTCGATGGTTGGATGGATGAATGTTGCTGCGCTGGCTGGTT
GGCGCGAGAGGAAGGAGAGCGCGAGGAGGAGGACGAATGCTGAGAAACAC
GACTCGGATCAATTTAAATATCCGTTTTTAGGCCCTTGCCTGTCCGGAGG
AGGAGGGGGAGGGGGAGGAGGTGGTGGAGGAAGAGGCAGAGGAGATGCTT
GAAGATTCATAGAGTGCACGTAGTGAAAAGGTGTGGGAAAACAAGAGATA
TAGGAAACCCAGGAGGA

protein sequence of jgi.p|Nanoce1779_2|574401

>mRNA_859-protein ID=mRNA_859-protein|Name=jgi.p|Nanoce1779_2|574401|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MGDSWEDDDFTPVLPQAVILPTKAAWEDEDLPDDPNFGKTPEQIATEAAQ
KRKAEELRQAKAAKDAERATLRRAAEEEAALMAKETPEERALRERKAVER
SDHAMADELFGGPGLDGEQQPGSRPASSLSLSSTISSSALGGSKKAGAVS
FASLNSPGDFTLLAKDLAPKFKKAASSKDVTSFVSELLARGAKDPVGVED
LNELIKNLQSLAVEKQRQADANRNKIGQKQKALAAKKREHKATAAKHKEL
FGDDFDGADPDMDQYYDMEDVSRKGGRKGGRVGGKGRRAGTVLYL*

mRNA from alignment at scaffold_2:598039..600101+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_859 ID=mRNA_859|Name=jgi.p|Nanoce1779_2|574401|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at scaffold_2:598039..600101+ (Nannochloropsis oceanica)
CAGACCAACTGTAAGCCATGGGAGACTCGTGGGAAGACGATGACTTTACG
CCAGTTCTGCCACAGGCGGTGATCTTGCCTACCAAGGCGGCTTGGGAAGA
CGAGGACTTGGTAGGTGGCGATCTGTGTGTGGTGCCCTTTTCTCAAGCCT
GTCTTCGGCTTTGTGTGCCTCGAACGTGCCCTCGAAGATTGAATAATCTC
GGAGTAAGGAGTATAAAGTTGTGCCTACAACTCATGAGCATGTGTGTCAC
GTAAAGTTTGTGAATTGATTTGAGCGCCCTTTGTGATAATAACACCCCAT
CTGCGTTCCCCCCTAACGCGTCAATTTGGGATGTATTTCCTGCTGTCTGA
GTGCTTACCCCTCGTGCGTATTTTTTCGTCCGTCGTCATGGAGACTGGAA
TGCATTCTTTTTTTTTACCTCGTGACCTTTCTTGCCAAACACTTATCCCA
CTCCTTCCGCCCTTCCCTGACCCCACACGCTTATAGCCCGACGACCCGAA
TTTCGGCAAGACTCCCGAGCAAATCGCCACCGAAGCCGCGCAAAAGAGAA
AAGCAGAGGAACTCCGTCAGGCTAAGGCCGCAAAAGATGCAGAGCGTGCC
ACTCTCCGACGAGCAGCAGAAGAAGAAGCGGCGTTAATGGCCAAGGAGAC
CCCAGAGGAACGGGCCTTACGGGAGCGGAAGGCTGTGGAGAGGTCGGACC
ACGCGATGGCGGATGAGTTGTTTGGGGGGCCAGGGCTAGACGGGGAGCAG
CAACCAGGCAGTAGGCCGGCTTCCTCTCTTAGTTTGTCGTCTACAATTTC
TTCGTCGGCTTTGGGAGGGAGCAAGGTATGTCAGAGAGAGTAGAGGGGGA
CTCCTCACTGGGTTAAAGTAAATTGTGGGAATTTACCAGCATTTGAGTTT
GAATTTGAAGTTCCATGCCATTCTCGCGTCCTCCATCCACCACCGTATGA
TCAATCCTTTTCTTCCACTTTCCCTCCCTCCCCTCCACCGAGCAGAAGGC
GGGCGCCGTATCCTTCGCGAGCCTCAATTCCCCGGGAGATTTCACGCTCC
TTGCCAAGGACCTGGCCCCTAAATTCAAAAAGGCCGCCAGCAGCAAGGAC
GTCACCAGCTTTGTCTCAGAGCTGCTCGCCAGGGGAGCTAAGGACCCCGT
GGGCGTGGAAGACCTTAACGAGTTGATCAAAAATCTGCAGTCCCTGGCCG
TGGAGAAACAGAGGCAGGCCGACGCGAACCGGAACAAGATCGGGCAGAAG
CAGAAGGCGCTGGCGGCGAAGAAGAGGGAGCATAAGGCGACAGCCGCCAA
GCACAAGGAGCTGTTTGGGGATGATTTTGATGGGGCGGATCCGGATATGG
ACCAGTACTATGATATGGAGGATGTGAGTAGAAAGGGAGGGAGGAAGGGA
GGGAGAGTGGGAGGGAAGGGTCGCCGCGCAGGGACAGTGCTATACTTGTG
ATGTGTGCTTTCGCACTCAGCCTTTTTATTCACGCCTAGATCCCTCTTTT
CTTCTCTTCTTATTTCCCGCTCTCGGGCGCACCCACAGGAGTTCATGTGA
AGCCCCGGGAGCCAAGCAAACAAGGCGAGCCGTCACACTCAGCTTGGGGA
CGACGGATTACCACTACCACCACCACCAGCAGCATCATTATCCAGTCACA
AGGGGAGACAATTGTGAGGGTCAGAGGCAGAGACGTTCACGAGCGAAGAA
AGCGCGCGAGGCCCACGATGGTGTGTCAACGTGCAAGGAATATAGGGATG
GAGGGAGGGTGGGAGGAAGGAAGGGAGGAATTTTGTATTTTGTCGATGGA
GATGGCTCGATGGTTGGATGGATGAATGTTGCTGCGCTGGCTGGTTGGCG
CGAGAGGAAGGAGAGCGCGAGGAGGAGGACGAATGCTGAGAAACACGACT
CGGATCAATTTAAATATCCGTTTTTAGGCCCTTGCCTGTCCGGAGGAGGA
GGGGGAGGGGGAGGAGGTGGTGGAGGAAGAGGCAGAGGAGATGCTTGAAG
ATTCATAGAGTGCACGTAGTGAAAAGGTGTGGGAAAACAAGAGATATAGG
AAACCCAGGAGGA

Coding sequence (CDS) from alignment at scaffold_2:598039..600101+

>mRNA_859 ID=mRNA_859|Name=jgi.p|Nanoce1779_2|574401|organism=Nannochloropsis oceanica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_2:598039..600101+ (Nannochloropsis oceanica)
ATGGGAGACTCGTGGGAAGACGATGACTTTACGCCAGTTCTGCCACAGGC
GGTGATCTTGCCTACCAAGGCGGCTTGGGAAGACGAGGACTTGCCCGACG
ACCCGAATTTCGGCAAGACTCCCGAGCAAATCGCCACCGAAGCCGCGCAA
AAGAGAAAAGCAGAGGAACTCCGTCAGGCTAAGGCCGCAAAAGATGCAGA
GCGTGCCACTCTCCGACGAGCAGCAGAAGAAGAAGCGGCGTTAATGGCCA
AGGAGACCCCAGAGGAACGGGCCTTACGGGAGCGGAAGGCTGTGGAGAGG
TCGGACCACGCGATGGCGGATGAGTTGTTTGGGGGGCCAGGGCTAGACGG
GGAGCAGCAACCAGGCAGTAGGCCGGCTTCCTCTCTTAGTTTGTCGTCTA
CAATTTCTTCGTCGGCTTTGGGAGGGAGCAAGAAGGCGGGCGCCGTATCC
TTCGCGAGCCTCAATTCCCCGGGAGATTTCACGCTCCTTGCCAAGGACCT
GGCCCCTAAATTCAAAAAGGCCGCCAGCAGCAAGGACGTCACCAGCTTTG
TCTCAGAGCTGCTCGCCAGGGGAGCTAAGGACCCCGTGGGCGTGGAAGAC
CTTAACGAGTTGATCAAAAATCTGCAGTCCCTGGCCGTGGAGAAACAGAG
GCAGGCCGACGCGAACCGGAACAAGATCGGGCAGAAGCAGAAGGCGCTGG
CGGCGAAGAAGAGGGAGCATAAGGCGACAGCCGCCAAGCACAAGGAGCTG
TTTGGGGATGATTTTGATGGGGCGGATCCGGATATGGACCAGTACTATGA
TATGGAGGATGTGAGTAGAAAGGGAGGGAGGAAGGGAGGGAGAGTGGGAG
GGAAGGGTCGCCGCGCAGGGACAGTGCTATACTTGTGAATGGGAGACTCG
TGGGAAGACGATGACTTTACGCCAGTTCTGCCACAGGCGGTGATCTTGCC
TACCAAGGCGGCTTGGGAAGACGAGGACTTGCCCGACGACCCGAATTTCG
GCAAGACTCCCGAGCAAATCGCCACCGAAGCCGCGCAAAAGAGAAAAGCA
GAGGAACTCCGTCAGGCTAAGGCCGCAAAAGATGCAGAGCGTGCCACTCT
CCGACGAGCAGCAGAAGAAGAAGCGGCGTTAATGGCCAAGGAGACCCCAG
AGGAACGGGCCTTACGGGAGCGGAAGGCTGTGGAGAGGTCGGACCACGCG
ATGGCGGATGAGTTGTTTGGGGGGCCAGGGCTAGACGGGGAGCAGCAACC
AGGCAGTAGGCCGGCTTCCTCTCTTAGTTTGTCGTCTACAATTTCTTCGT
CGGCTTTGGGAGGGAGCAAGAAGGCGGGCGCCGTATCCTTCGCGAGCCTC
AATTCCCCGGGAGATTTCACGCTCCTTGCCAAGGACCTGGCCCCTAAATT
CAAAAAGGCCGCCAGCAGCAAGGACGTCACCAGCTTTGTCTCAGAGCTGC
TCGCCAGGGGAGCTAAGGACCCCGTGGGCGTGGAAGACCTTAACGAGTTG
ATCAAAAATCTGCAGTCCCTGGCCGTGGAGAAACAGAGGCAGGCCGACGC
GAACCGGAACAAGATCGGGCAGAAGCAGAAGGCGCTGGCGGCGAAGAAGA
GGGAGCATAAGGCGACAGCCGCCAAGCACAAGGAGCTGTTTGGGGATGAT
TTTGATGGGGCGGATCCGGATATGGACCAGTACTATGATATGGAGGATGT
GAGTAGAAAGGGAGGGAGGAAGGGAGGGAGAGTGGGAGGGAAGGGTCGCC
GCGCAGGGACAGTGCTATACTTGTGAATGGGAGACTCGTGGGAAGACGAT
GACTTTACGCCAGTTCTGCCACAGGCGGTGATCTTGCCTACCAAGGCGGC
TTGGGAAGACGAGGACTTGCCCGACGACCCGAATTTCGGCAAGACTCCCG
AGCAAATCGCCACCGAAGCCGCGCAAAAGAGAAAAGCAGAGGAACTCCGT
CAGGCTAAGGCCGCAAAAGATGCAGAGCGTGCCACTCTCCGACGAGCAGC
AGAAGAAGAAGCGGCGTTAATGGCCAAGGAGACCCCAGAGGAACGGGCCT
TACGGGAGCGGAAGGCTGTGGAGAGGTCGGACCACGCGATGGCGGATGAG
TTGTTTGGGGGGCCAGGGCTAGACGGGGAGCAGCAACCAGGCAGTAGGCC
GGCTTCCTCTCTTAGTTTGTCGTCTACAATTTCTTCGTCGGCTTTGGGAG
GGAGCAAGAAGGCGGGCGCCGTATCCTTCGCGAGCCTCAATTCCCCGGGA
GATTTCACGCTCCTTGCCAAGGACCTGGCCCCTAAATTCAAAAAGGCCGC
CAGCAGCAAGGACGTCACCAGCTTTGTCTCAGAGCTGCTCGCCAGGGGAG
CTAAGGACCCCGTGGGCGTGGAAGACCTTAACGAGTTGATCAAAAATCTG
CAGTCCCTGGCCGTGGAGAAACAGAGGCAGGCCGACGCGAACCGGAACAA
GATCGGGCAGAAGCAGAAGGCGCTGGCGGCGAAGAAGAGGGAGCATAAGG
CGACAGCCGCCAAGCACAAGGAGCTGTTTGGGGATGATTTTGATGGGGCG
GATCCGGATATGGACCAGTACTATGATATGGAGGATGTGAGTAGAAAGGG
AGGGAGGAAGGGAGGGAGAGTGGGAGGGAAGGGTCGCCGCGCAGGGACAG
TGCTATACTTGTGA

Synonyms

Publications