jgi.p|Nanoce1779_2|603259, mRNA_8589 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603259
Unique NamemRNA_8589
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length952
Alignment locationscaffold_26:285406..286543 +

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Properties
Property NameValue
TranscriptId603345
TrackFilteredModels2
ProteinId603259
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:285406..286543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603259gene_8589Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603259mRNA_8589-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8589CDS_8589Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8589 ID=mRNA_8589|Name=jgi.p|Nanoce1779_2|603259|organism=Nannochloropsis oceanica|type=mRNA|length=952bp
ACAGCCCGAAGACAGAACTTGCCGAAGACCGCATCGTCAGCTAGTCCAGT
CAACAGTGGAATGACAACGACGAGACAAAGGCAAGCCTGGGCTATTTCCC
TCCTGTTCATCCTCCTTACACCTACGGAAGCCCGGGTCTGGGGCAAGGTC
ATCCATCCTCCTGAGGTACTGGCTGCGGTGCCAGAGATTCATTTGCAAGC
CCAGTGGCTGCACGCCCACCTCGAGGAGCTTCCCGCGATCACCCCGGCCC
TGGAGCCCTATTGGGACAATGCTACGGTACGACCCATCTTGGAAGCTGTC
AAGCGATGTAAAAAAATTGACCCACAAGCTATCGGTTGGCATCGCGTGTA
CAAACGTCGGCAAAAAAAGACGAGCAAGCACGATACTCTCCCACTTGCAA
ACGCCACCGCTGAGCACCAAGAGGAAGAGAGGCCGGGCGGGGAGGAAGAC
GAATCCATGTTTGAATATGAATACGTCGACGACGAATCTATCTCTTTTCT
AGAATCACTTTGGGAGGAAAAGAGGGCAGCAGCCGCCGCCGCTGCCGCAA
CGGTTCGAGCAGAAGCAGCGGCAGCAGAAGATCCCTCTACCCTGCTGGGG
CCCTACATGGTCTTTCTCCTCACCGCCTTCTCCTCCGATCCATTTTCTCT
CCACCTGGAGACCCTCATCAACCAGTTAGCCCCCGCATTCCCTCATGTCC
TCTTCCTCAAGGGTGACGGTCAGCAAGATTTTTCCGGGTTGACCTCCCAA
ATACGCGTCAAAGGGCTACCGCAGCTCCTCATATTCGAAGAAAATTTGTT
AAGAAGTAGATATAAGGCCAAAACCAAAGATTTAAAATCCGTTTTGAACT
TCTTGGTGTTGCATACGGGAGCATTGCCCCAGGCTGTGGTAGGGAAGGGA
AGGAGGGGAGGAGGCGAGCGAAGATTTGTGGTTAGGTTGCCGAGGGGGGC
GG
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protein sequence of jgi.p|Nanoce1779_2|603259

>mRNA_8589-protein ID=mRNA_8589-protein|Name=jgi.p|Nanoce1779_2|603259|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MTTTRQRQAWAISLLFILLTPTEARVWGKVIHPPEVLAAVPEIHLQAQWL
HAHLEELPAITPALEPYWDNATVRPILEAVKRC
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mRNA from alignment at scaffold_26:285406..286543+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8589 ID=mRNA_8589|Name=jgi.p|Nanoce1779_2|603259|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp|location=Sequence derived from alignment at scaffold_26:285406..286543+ (Nannochloropsis oceanica)
ACAGCCCGAAGACAGAACTTGCCGAAGACCGCATCGTCAGCTAGTCCAGT
CAACAGTGGAATGACAACGACGAGACAAAGGCAAGCCTGGGCTATTTCCC
TCCTGTTCATCCTCCTTACACCTACGGAAGCCCGGGTCTGGGGCAAGGTC
ATCCATCCTCCTGAGGTACTGGCTGCGGTGCCAGAGATTCATTTGCAAGC
CCAGTGGCTGCACGCCCACCTCGAGGAGCTTCCCGCGATCACCCCGGCCC
TGGAGCCCTATTGGGACAATGCTACGGTACGACCCATCTTGGAAGCTGTC
AAGCGATGTAAGTGTGTTGGGGAGATGACAGGGAGGAAGAGAGTGGGGGA
AGCTCTATTAATGCCAGGCCCCGTGTCTACAAATAAAGCATGCGCAAGAA
AAAGCTCAATATGCTTACGTACTCGTTCATTCACTTACACATCGCAAAAT
CCACGCACACGCTCAACCACAGCTTCCAACCCCTCCTACCAAATTAGAAA
AATTGACCCACAAGCTATCGGTTGGCATCGCGTGTACAAACGTCGGCAAA
AAAAGACGAGCAAGCACGATACTCTCCCACTTGCAAACGCCACCGCTGAG
CACCAAGAGGAAGAGAGGCCGGGCGGGGAGGAAGACGAATCCATGTTTGA
ATATGAATACGTCGACGACGAATCTATCTCTTTTCTAGAATCACTTTGGG
AGGAAAAGAGGGCAGCAGCCGCCGCCGCTGCCGCAACGGTTCGAGCAGAA
GCAGCGGCAGCAGAAGATCCCTCTACCCTGCTGGGGCCCTACATGGTCTT
TCTCCTCACCGCCTTCTCCTCCGATCCATTTTCTCTCCACCTGGAGACCC
TCATCAACCAGTTAGCCCCCGCATTCCCTCATGTCCTCTTCCTCAAGGGT
GACGGTCAGCAAGATTTTTCCGGGTTGACCTCCCAAATACGCGTCAAAGG
GCTACCGCAGCTCCTCATATTCGAAGAAAATTTGTTAAGAAGTAGATATA
AGGCCAAAACCAAAGATTTAAAATCCGTTTTGAACTTCTTGGTGTTGCAT
ACGGGAGCATTGCCCCAGGCTGTGGTAGGGAAGGGAAGGAGGGGAGGAGG
CGAGCGAAGATTTGTGGTTAGGTTGCCGAGGGGGGCGG
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Coding sequence (CDS) from alignment at scaffold_26:285406..286543+

>mRNA_8589 ID=mRNA_8589|Name=jgi.p|Nanoce1779_2|603259|organism=Nannochloropsis oceanica|type=CDS|length=251bp|location=Sequence derived from alignment at scaffold_26:285406..286543+ (Nannochloropsis oceanica)
ATGACAACGACGAGACAAAGGCAAGCCTGGGCTATTTCCCTCCTGTTCAT
CCTCCTTACACCTACGGAAGCCCGGGTCTGGGGCAAGGTCATCCATCCTC
CTGAGGTACTGGCTGCGGTGCCAGAGATTCATTTGCAAGCCCAGTGGCTG
CACGCCCACCTCGAGGAGCTTCCCGCGATCACCCCGGCCCTGGAGCCCTA
TTGGGACAATGCTACGGTACGACCCATCTTGGAAGCTGTCAAGCGATGTA
A
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Synonyms
Publications