jgi.p|Nanoce1779_2|603253, mRNA_8587 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603253
Unique NamemRNA_8587
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length902
Alignment locationscaffold_26:282113..283014 +

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Properties
Property NameValue
TranscriptId603339
TrackFilteredModels2
ProteinId603253
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:282113..283014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603253gene_8587Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603253mRNA_8587-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8587CDS_8587Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8587 ID=mRNA_8587|Name=jgi.p|Nanoce1779_2|603253|organism=Nannochloropsis oceanica|type=mRNA|length=902bp
ACAGGCTTTTCTCAGAGACTTCTAAGCAAGCGCAGAAGAAAATGGCAGGC
CGTCTCTTGCCCCTGGAGCTCGTTGACAAGTGCATTGGCTCCCGTCTGTG
GGTTATCATGAAGGGGGACCAAGAACTTTTTGGGACTCTCAAGAGCTTCG
ATGACTACGTAAACATGGTGCTGGAGGACGTGACTGAGTACGAGATGACG
CCAGAGGGGAGGGTTGCGCATAAACTGGACCAGATTTTGTTGAATGGGAA
CAACATTGCCATATTGGTACCCGGACGAAGCCCGGATGATGCATGATCAT
GAGGGTGAGGCACGTGACAAAAGAGGAGGGGGGAAATTGCGAGAGAGATG
AGCCATTGTGTGGGATGGTTGAGTGTGGGATGGTTGAGTACGGCGAAATG
TCGGGGATTTGGGAGTCGGTCGAATGGTGTCTAATGTCAGGTCATGGATT
GCAGTTTGCCCAATCCGAGCCTCTCAATTGTGTTCCTTTTCCCTTTCTTT
TCCAATCTTAGGGAAGCACTAAACGAATGAGAAAGAGAAGTAGCGTAAGA
CAGCAAAAAGAACGGTAAAGAAAAGATCGAAGGCAGGAAAAGAGGGCACA
ATTATGCCTGGGTGTGTAGAAAATGTGTACGATAAATTAATTTCGATGTG
CATGGGGGAGAGAGGGTCATGCTATCAAAAGCAAAATCTTATACCTTGGA
TGGGGGAGAGGAGAAAAAGAAGCAAGTGTTGAGTTTTGAAACGGAAAGAC
AGAGAGCAACGGGGGTGGGGGTGTTGTGATGGATTGAATGGCGCTGCCCT
CGGGGGCGCGGACTGTGCCGAGAGCACGGCCTTCAAGCAAACCCGAAATG
GAGAACCTCGAATCCAAAAAGAATTAAAAACGGCGTCTCGACGGGAGCAT
GT
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protein sequence of jgi.p|Nanoce1779_2|603253

>mRNA_8587-protein ID=mRNA_8587-protein|Name=jgi.p|Nanoce1779_2|603253|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MAGRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEY
EMTPEGRVAHKLDQILLNGNNIAILVPGRSPDDA*
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mRNA from alignment at scaffold_26:282113..283014+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8587 ID=mRNA_8587|Name=jgi.p|Nanoce1779_2|603253|organism=Nannochloropsis oceanica|type=mRNA|length=902bp|location=Sequence derived from alignment at scaffold_26:282113..283014+ (Nannochloropsis oceanica)
ACAGGCTTTTCTCAGAGACTTCTAAGCAAGCGCAGAAGAAAATGGCAGGC
CGTCTCTTGCCCCTGGAGCTCGTTGACAAGTGCATTGGCTCCCGTCTGTG
GGTTATCATGAAGGGGGACCAAGAACTTTTTGGGACTCTCAAGAGCTTCG
ATGACTACGTAAACATGGTGCTGGAGGACGTGACTGAGTACGAGATGACG
CCAGAGGGGAGGGTTGCGCATAAACTGGACCAGATTTTGTTGAATGGGAA
CAACATTGCCATATTGGTACCCGGACGAAGCCCGGATGATGCATGATCAT
GAGGGTGAGGCACGTGACAAAAGAGGAGGGGGGAAATTGCGAGAGAGATG
AGCCATTGTGTGGGATGGTTGAGTGTGGGATGGTTGAGTACGGCGAAATG
TCGGGGATTTGGGAGTCGGTCGAATGGTGTCTAATGTCAGGTCATGGATT
GCAGTTTGCCCAATCCGAGCCTCTCAATTGTGTTCCTTTTCCCTTTCTTT
TCCAATCTTAGGGAAGCACTAAACGAATGAGAAAGAGAAGTAGCGTAAGA
CAGCAAAAAGAACGGTAAAGAAAAGATCGAAGGCAGGAAAAGAGGGCACA
ATTATGCCTGGGTGTGTAGAAAATGTGTACGATAAATTAATTTCGATGTG
CATGGGGGAGAGAGGGTCATGCTATCAAAAGCAAAATCTTATACCTTGGA
TGGGGGAGAGGAGAAAAAGAAGCAAGTGTTGAGTTTTGAAACGGAAAGAC
AGAGAGCAACGGGGGTGGGGGTGTTGTGATGGATTGAATGGCGCTGCCCT
CGGGGGCGCGGACTGTGCCGAGAGCACGGCCTTCAAGCAAACCCGAAATG
GAGAACCTCGAATCCAAAAAGAATTAAAAACGGCGTCTCGACGGGAGCAT
GT
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Coding sequence (CDS) from alignment at scaffold_26:282113..283014+

>mRNA_8587 ID=mRNA_8587|Name=jgi.p|Nanoce1779_2|603253|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_26:282113..283014+ (Nannochloropsis oceanica)
ATGGCAGGCCGTCTCTTGCCCCTGGAGCTCGTTGACAAGTGCATTGGCTC
CCGTCTGTGGGTTATCATGAAGGGGGACCAAGAACTTTTTGGGACTCTCA
AGAGCTTCGATGACTACGTAAACATGGTGCTGGAGGACGTGACTGAGTAC
GAGATGACGCCAGAGGGGAGGGTTGCGCATAAACTGGACCAGATTTTGTT
GAATGGGAACAACATTGCCATATTGGTACCCGGACGAAGCCCGGATGATG
CATGA
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Synonyms
Publications