jgi.p|Nanoce1779_2|603196, mRNA_8583 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603196
Unique NamemRNA_8583
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1775
Alignment locationscaffold_26:262254..264028 -

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Properties
Property NameValue
TranscriptId603282
TrackFilteredModels2
ProteinId603196
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:262254..264028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603196gene_8583Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603196mRNA_8583-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8583CDS_8583Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8583 ID=mRNA_8583|Name=jgi.p|Nanoce1779_2|603196|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp
AGGCCACGCCCCTATCCTACGATGCTGCCTCGGACGTGCGCGTCTCCAGG
CCGGCATGGTGGAGGCAGCAGCAGATGGAACAGCAACATCAGCGGCGGCA
ATGCTTCGTCCTGGTGGGGCCTCTCATTAGCAAAGTGGGCATGGATCTCT
GCCTGCGTGGGACTGCTCGGTCTCTCTCTGAACTTTTGGGCCGATACCGT
GTGGGTGGGGGTGGACAGAGGCGGGGGAAGCGTCACCCTAAGTCATGCCA
TTCGTCACTCCCTCCGTCTGACAAGCAAGCGCCCCCTTGTTGGCACTAAA
GACAGACCTTTGCTCATTGTCGGGACTCATCACAAGACTGGCACGGCACT
AATGGCCTTGGTCCTCCGCGAGGCGTTCAGCGTGCACAAGAGCTTGACAG
GCGGGAAGAGTTCCGGGGTGATGATGGGTTTCTTTGGGAAAGCCGAAAAG
GCCGGAGCGCCGTATGCGTTCTACTACTGCGATCAACTCTATGCAGACAC
ATGGAACAAAAGTGATTCGAGTTCGACTGAGCATTTACCGAAACTGGTGG
ACAACCATCAGTTCTTCAACGGGCATTATAAATTCGTCCATCTCGTGCGG
GATCCTGTCGAGTTGGTAATTTCGGCTTACCTGTACCACCATGGCGGCCC
CCCCGACTGGCAAGAAGTATGGTTGTACGAGAAACATCCTTTGAGCAACT
ACAAGACAGTGATGACGAACTCGAGTTGCGACCCAAAAGGACGCACAGAA
ATGTCCTGGTATGACGTCCTCCGGTGCTTGAACCAGAAGGAGGGGTTGCT
CGCAGAAGCGTTGTTTCAGACGTATTTTGGGGCTCTGCCCTCTATGGTAG
CAGCCGTGAAGCACATCCACGGTGATCACCAGCATGCCCGCGTCCTACAG
TTGGGGCTGGAAGAGTTTCAATTAAATTTTGACGGGACCGTTTCGAGAAT
GTTCGAATTTTTGGGTTTTGGGAAGAAGGAGGTGGGAAAGATTGTGGAGG
GTTGTGCGCCGTTCGATTTGCAGAGGCAGAGTCAGGGAGAGAAAGAGAGA
AACGAGCACGTGACAGCTGGCAAGTTTGATAAAGGGAAATTAAGGGAGAT
CATGGTGGCATACGACGACCCGGTGTTTAAGGAGGCGAGGAGGGTTCTGG
GGTACCCTAAGGAGGAGAGCGTAGTGAGGACGCGACCTGCGCACTAGGGA
GGGGACGCAGGGAAGAAAAAAGGGAGGGAATGAGGAGAGGGAAAAGCAAA
TGATCCTGACGTATGAGAAAACAGGAGAAAGGGAGGAACGGAGGGAGTGA
GCGGAGGAGATGGTAATGTATATAAGAAAAACATCTGTTGTATTTGTACA
TCGAAGAAGAATCATAAAGATGGTGAGCGACATCGAGCGTACGTGTGAAG
GTAGGGTGCCCACAAGCAAGCGGCAGCAGGATAAGAAAAAAGAGGAGGAG
GAGGGTGTGGAGGAGGTAGTCATGGTGGACGGGGAGGAGAAAATGAAGGA
AAATGAAACTGGAGAGAAAGAGGCATTGGAACGTCACAGGAGGTATCCAT
TTTCATGGCCGAGCTTGAGTGCCTGCTCATGGGCATTACGCGAACAGCAA
CGAGTGAATAGAATAATGGGAGGGCAAAGGAGGAAGGCGGGAATTCAAAA
CCTCTTTGTGTGCGTCCGTGTATGTGTATGTGACTGCTGTGATGAATAAC
AGATGATAGAAATAAGGAGACGAGTAGCGGCAACCGAGACCGACCATTAG
CAAAATAAGTCAACGTAATGTCTGA
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protein sequence of jgi.p|Nanoce1779_2|603196

>mRNA_8583-protein ID=mRNA_8583-protein|Name=jgi.p|Nanoce1779_2|603196|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MLPRTCASPGRHGGGSSRWNSNISGGNASSWWGLSLAKWAWISACVGLLG
LSLNFWADTVWVGVDRGGGSVTLSHAIRHSLRLTSKRPLVGTKDRPLLIV
GTHHKTGTALMALVLREAFSVHKSLTGGKSSGVMMGFFGKAEKAGAPYAF
YYCDQLYADTWNKSDSSSTEHLPKLVDNHQFFNGHYKFVHLVRDPVELVI
SAYLYHHGGPPDWQEVWLYEKHPLSNYKTVMTNSSCDPKGRTEMSWYDVL
RCLNQKEGLLAEALFQTYFGALPSMVAAVKHIHGDHQHARVLQLGLEEFQ
LNFDGTVSRMFEFLGFGKKEVGKIVEGCAPFDLQRQSQGEKERNEHVTAG
KFDKGKLREIMVAYDDPVFKEARRVLGYPKEESVVRTRPAH*
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mRNA from alignment at scaffold_26:262254..264028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8583 ID=mRNA_8583|Name=jgi.p|Nanoce1779_2|603196|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at scaffold_26:262254..264028- (Nannochloropsis oceanica)
AGGCCACGCCCCTATCCTACGATGCTGCCTCGGACGTGCGCGTCTCCAGG
CCGGCATGGTGGAGGCAGCAGCAGATGGAACAGCAACATCAGCGGCGGCA
ATGCTTCGTCCTGGTGGGGCCTCTCATTAGCAAAGTGGGCATGGATCTCT
GCCTGCGTGGGACTGCTCGGTCTCTCTCTGAACTTTTGGGCCGATACCGT
GTGGGTGGGGGTGGACAGAGGCGGGGGAAGCGTCACCCTAAGTCATGCCA
TTCGTCACTCCCTCCGTCTGACAAGCAAGCGCCCCCTTGTTGGCACTAAA
GACAGACCTTTGCTCATTGTCGGGACTCATCACAAGACTGGCACGGCACT
AATGGCCTTGGTCCTCCGCGAGGCGTTCAGCGTGCACAAGAGCTTGACAG
GCGGGAAGAGTTCCGGGGTGATGATGGGTTTCTTTGGGAAAGCCGAAAAG
GCCGGAGCGCCGTATGCGTTCTACTACTGCGATCAACTCTATGCAGACAC
ATGGAACAAAAGTGATTCGAGTTCGACTGAGCATTTACCGAAACTGGTGG
ACAACCATCAGTTCTTCAACGGGCATTATAAATTCGTCCATCTCGTGCGG
GATCCTGTCGAGTTGGTAATTTCGGCTTACCTGTACCACCATGGCGGCCC
CCCCGACTGGCAAGAAGTATGGTTGTACGAGAAACATCCTTTGAGCAACT
ACAAGACAGTGATGACGAACTCGAGTTGCGACCCAAAAGGACGCACAGAA
ATGTCCTGGTATGACGTCCTCCGGTGCTTGAACCAGAAGGAGGGGTTGCT
CGCAGAAGCGTTGTTTCAGACGTATTTTGGGGCTCTGCCCTCTATGGTAG
CAGCCGTGAAGCACATCCACGGTGATCACCAGCATGCCCGCGTCCTACAG
TTGGGGCTGGAAGAGTTTCAATTAAATTTTGACGGGACCGTTTCGAGAAT
GTTCGAATTTTTGGGTTTTGGGAAGAAGGAGGTGGGAAAGATTGTGGAGG
GTTGTGCGCCGTTCGATTTGCAGAGGCAGAGTCAGGGAGAGAAAGAGAGA
AACGAGCACGTGACAGCTGGCAAGTTTGATAAAGGGAAATTAAGGGAGAT
CATGGTGGCATACGACGACCCGGTGTTTAAGGAGGCGAGGAGGGTTCTGG
GGTACCCTAAGGAGGAGAGCGTAGTGAGGACGCGACCTGCGCACTAGGGA
GGGGACGCAGGGAAGAAAAAAGGGAGGGAATGAGGAGAGGGAAAAGCAAA
TGATCCTGACGTATGAGAAAACAGGAGAAAGGGAGGAACGGAGGGAGTGA
GCGGAGGAGATGGTAATGTATATAAGAAAAACATCTGTTGTATTTGTACA
TCGAAGAAGAATCATAAAGATGGTGAGCGACATCGAGCGTACGTGTGAAG
GTAGGGTGCCCACAAGCAAGCGGCAGCAGGATAAGAAAAAAGAGGAGGAG
GAGGGTGTGGAGGAGGTAGTCATGGTGGACGGGGAGGAGAAAATGAAGGA
AAATGAAACTGGAGAGAAAGAGGCATTGGAACGTCACAGGAGGTATCCAT
TTTCATGGCCGAGCTTGAGTGCCTGCTCATGGGCATTACGCGAACAGCAA
CGAGTGAATAGAATAATGGGAGGGCAAAGGAGGAAGGCGGGAATTCAAAA
CCTCTTTGTGTGCGTCCGTGTATGTGTATGTGACTGCTGTGATGAATAAC
AGATGATAGAAATAAGGAGACGAGTAGCGGCAACCGAGACCGACCATTAG
CAAAATAAGTCAACGTAATGTCTGA
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Coding sequence (CDS) from alignment at scaffold_26:262254..264028-

>mRNA_8583 ID=mRNA_8583|Name=jgi.p|Nanoce1779_2|603196|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_26:262254..264028- (Nannochloropsis oceanica)
ATGCTGCCTCGGACGTGCGCGTCTCCAGGCCGGCATGGTGGAGGCAGCAG
CAGATGGAACAGCAACATCAGCGGCGGCAATGCTTCGTCCTGGTGGGGCC
TCTCATTAGCAAAGTGGGCATGGATCTCTGCCTGCGTGGGACTGCTCGGT
CTCTCTCTGAACTTTTGGGCCGATACCGTGTGGGTGGGGGTGGACAGAGG
CGGGGGAAGCGTCACCCTAAGTCATGCCATTCGTCACTCCCTCCGTCTGA
CAAGCAAGCGCCCCCTTGTTGGCACTAAAGACAGACCTTTGCTCATTGTC
GGGACTCATCACAAGACTGGCACGGCACTAATGGCCTTGGTCCTCCGCGA
GGCGTTCAGCGTGCACAAGAGCTTGACAGGCGGGAAGAGTTCCGGGGTGA
TGATGGGTTTCTTTGGGAAAGCCGAAAAGGCCGGAGCGCCGTATGCGTTC
TACTACTGCGATCAACTCTATGCAGACACATGGAACAAAAGTGATTCGAG
TTCGACTGAGCATTTACCGAAACTGGTGGACAACCATCAGTTCTTCAACG
GGCATTATAAATTCGTCCATCTCGTGCGGGATCCTGTCGAGTTGGTAATT
TCGGCTTACCTGTACCACCATGGCGGCCCCCCCGACTGGCAAGAAGTATG
GTTGTACGAGAAACATCCTTTGAGCAACTACAAGACAGTGATGACGAACT
CGAGTTGCGACCCAAAAGGACGCACAGAAATGTCCTGGTATGACGTCCTC
CGGTGCTTGAACCAGAAGGAGGGGTTGCTCGCAGAAGCGTTGTTTCAGAC
GTATTTTGGGGCTCTGCCCTCTATGGTAGCAGCCGTGAAGCACATCCACG
GTGATCACCAGCATGCCCGCGTCCTACAGTTGGGGCTGGAAGAGTTTCAA
TTAAATTTTGACGGGACCGTTTCGAGAATGTTCGAATTTTTGGGTTTTGG
GAAGAAGGAGGTGGGAAAGATTGTGGAGGGTTGTGCGCCGTTCGATTTGC
AGAGGCAGAGTCAGGGAGAGAAAGAGAGAAACGAGCACGTGACAGCTGGC
AAGTTTGATAAAGGGAAATTAAGGGAGATCATGGTGGCATACGACGACCC
GGTGTTTAAGGAGGCGAGGAGGGTTCTGGGGTACCCTAAGGAGGAGAGCG
TAGTGAGGACGCGACCTGCGCACTAG
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Synonyms
Publications