jgi.p|Nanoce1779_2|603195, mRNA_8581 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603195
Unique NamemRNA_8581
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1317
Alignment locationscaffold_26:260498..261814 +

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Properties
Property NameValue
TranscriptId603281
TrackFilteredModels2
ProteinId603195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:260498..261814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603195gene_8581Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603195mRNA_8581-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8581CDS_8581Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8581 ID=mRNA_8581|Name=jgi.p|Nanoce1779_2|603195|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
CAGCCACACAACAGGCGCACGTATAGACGCCTGCACGACGGAGCGAAAAG
AAGGAACAATGCGATCCGCCACCTCTTCGTCTCCCTCCCTTGCAAGCAAG
GCTATGCCCTTGCTCCTCCTCAGTTTGTCCGCCACGCCCATTCTATCCTT
TTTCCAATCTAGCAGCAGCATCAGCAGCGTGACCAGGCTTACCAGCAATG
GGCTCCAATTACCCTTCCGTCCCACGGGCCGCCGTGCTGCCGTGGTGATG
ATGAGCGACTTAGACCGGGCTGCGAAGCTCAGAGAAGAAGCTGCGAAACT
CGAGCAGGACCTTGCGGCCATTCAGGCGTTGAGACCCAAGCCTGTTGTGA
CGGAGGAAAGCCCGGCAGCCCCCGTAGCCCGTTATTTGTCCTTTGAGCAA
ATCCAGGAGGAAGTGACCAAGGCCATGTCCTCGAGTGCAGTAGTGGACGC
GACTCTGAAGCAATTGAAGGCCTCGGGCGTCCTATCAAAATTCGAGAGCA
TCAGTGCAAAGGGATTGAGGCGGTACAGTGCCGAGCAATTTGAACAAACG
ACAGGATTTCCACCTCAAGACGTGGAGAGCGGTGGGACGCAGGATGACTT
GAAATGGGCGTTGGGGGCAGTGATGGCGGCCAGTACGGTCGTGGTGATTG
GTGCGAGTTTCTTGGGAGGATTTGTGGGCACATTGCTTGTGTATCTGTTT
TTGTTGATTCCTATCACCTTCATTGGGGTTGGTTCCGTCGCGCCGGGTGT
CATTTCTGTCCTTGTGGTGTTGGTGAACAACCTCCTGGATGGGAAGCAAG
CGGAGCGGAGAGCGACGCACCAAGCAGCAAGGTTTTTGAGTGGCTACTTG
CTTGGACTGCCCATTGAGAGCGTCAAGACGGAGGGAGAGGGAGGGACTAC
GTTCATCAAGTTCTTTGACACGGTCGATGGGAATTTCAGGGACCTCGGTG
CAGAAGGAGCGTCAGGGCCAGGGCCAGAGGCAAGGAAGAAGTTCAGCCAG
GACGATATTTTAGCCCATGCGGTATTGGCGATCAGCGGGTCCGTGGCGGA
GAGGATGGAGTACGGAAAGGTGATTGACCGACAGGCGGACTTCCTCTACC
TTGTCGCATTGATGGACCTGGTCCGGCCGGCGTTGAGGGCGGGGCAGAAG
AATGACCTGGTGTTGTATTCGGCGCTGACGGCCCATAAAATCTTGGGTGC
GAACAAGAGTAAACTGGAGCGATTGACGGAGAAGGTGGCTGCGAAGGCAC
CGCTGGCTGAGCTCGTAGCCGTCGTGGAGGGATAGAGGGAGGTATAGAGG
GAGGGAGGGACAAACCG
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protein sequence of jgi.p|Nanoce1779_2|603195

>mRNA_8581-protein ID=mRNA_8581-protein|Name=jgi.p|Nanoce1779_2|603195|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MRSATSSSPSLASKAMPLLLLSLSATPILSFFQSSSSISSVTRLTSNGLQ
LPFRPTGRRAAVVMMSDLDRAAKLREEAAKLEQDLAAIQALRPKPVVTEE
SPAAPVARYLSFEQIQEEVTKAMSSSAVVDATLKQLKASGVLSKFESISA
KGLRRYSAEQFEQTTGFPPQDVESGGTQDDLKWALGAVMAASTVVVIGAS
FLGGFVGTLLVYLFLLIPITFIGVGSVAPGVISVLVVLVNNLLDGKQAER
RATHQAARFLSGYLLGLPIESVKTEGEGGTTFIKFFDTVDGNFRDLGAEG
ASGPGPEARKKFSQDDILAHAVLAISGSVAERMEYGKVIDRQADFLYLVA
LMDLVRPALRAGQKNDLVLYSALTAHKILGANKSKLERLTEKVAAKAPLA
ELVAVVEG*
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mRNA from alignment at scaffold_26:260498..261814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8581 ID=mRNA_8581|Name=jgi.p|Nanoce1779_2|603195|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp|location=Sequence derived from alignment at scaffold_26:260498..261814+ (Nannochloropsis oceanica)
CAGCCACACAACAGGCGCACGTATAGACGCCTGCACGACGGAGCGAAAAG
AAGGAACAATGCGATCCGCCACCTCTTCGTCTCCCTCCCTTGCAAGCAAG
GCTATGCCCTTGCTCCTCCTCAGTTTGTCCGCCACGCCCATTCTATCCTT
TTTCCAATCTAGCAGCAGCATCAGCAGCGTGACCAGGCTTACCAGCAATG
GGCTCCAATTACCCTTCCGTCCCACGGGCCGCCGTGCTGCCGTGGTGATG
ATGAGCGACTTAGACCGGGCTGCGAAGCTCAGAGAAGAAGCTGCGAAACT
CGAGCAGGACCTTGCGGCCATTCAGGCGTTGAGACCCAAGCCTGTTGTGA
CGGAGGAAAGCCCGGCAGCCCCCGTAGCCCGTTATTTGTCCTTTGAGCAA
ATCCAGGAGGAAGTGACCAAGGCCATGTCCTCGAGTGCAGTAGTGGACGC
GACTCTGAAGCAATTGAAGGCCTCGGGCGTCCTATCAAAATTCGAGAGCA
TCAGTGCAAAGGGATTGAGGCGGTACAGTGCCGAGCAATTTGAACAAACG
ACAGGATTTCCACCTCAAGACGTGGAGAGCGGTGGGACGCAGGATGACTT
GAAATGGGCGTTGGGGGCAGTGATGGCGGCCAGTACGGTCGTGGTGATTG
GTGCGAGTTTCTTGGGAGGATTTGTGGGCACATTGCTTGTGTATCTGTTT
TTGTTGATTCCTATCACCTTCATTGGGGTTGGTTCCGTCGCGCCGGGTGT
CATTTCTGTCCTTGTGGTGTTGGTGAACAACCTCCTGGATGGGAAGCAAG
CGGAGCGGAGAGCGACGCACCAAGCAGCAAGGTTTTTGAGTGGCTACTTG
CTTGGACTGCCCATTGAGAGCGTCAAGACGGAGGGAGAGGGAGGGACTAC
GTTCATCAAGTTCTTTGACACGGTCGATGGGAATTTCAGGGACCTCGGTG
CAGAAGGAGCGTCAGGGCCAGGGCCAGAGGCAAGGAAGAAGTTCAGCCAG
GACGATATTTTAGCCCATGCGGTATTGGCGATCAGCGGGTCCGTGGCGGA
GAGGATGGAGTACGGAAAGGTGATTGACCGACAGGCGGACTTCCTCTACC
TTGTCGCATTGATGGACCTGGTCCGGCCGGCGTTGAGGGCGGGGCAGAAG
AATGACCTGGTGTTGTATTCGGCGCTGACGGCCCATAAAATCTTGGGTGC
GAACAAGAGTAAACTGGAGCGATTGACGGAGAAGGTGGCTGCGAAGGCAC
CGCTGGCTGAGCTCGTAGCCGTCGTGGAGGGATAGAGGGAGGTATAGAGG
GAGGGAGGGACAAACCG
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Coding sequence (CDS) from alignment at scaffold_26:260498..261814+

>mRNA_8581 ID=mRNA_8581|Name=jgi.p|Nanoce1779_2|603195|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at scaffold_26:260498..261814+ (Nannochloropsis oceanica)
ATGCGATCCGCCACCTCTTCGTCTCCCTCCCTTGCAAGCAAGGCTATGCC
CTTGCTCCTCCTCAGTTTGTCCGCCACGCCCATTCTATCCTTTTTCCAAT
CTAGCAGCAGCATCAGCAGCGTGACCAGGCTTACCAGCAATGGGCTCCAA
TTACCCTTCCGTCCCACGGGCCGCCGTGCTGCCGTGGTGATGATGAGCGA
CTTAGACCGGGCTGCGAAGCTCAGAGAAGAAGCTGCGAAACTCGAGCAGG
ACCTTGCGGCCATTCAGGCGTTGAGACCCAAGCCTGTTGTGACGGAGGAA
AGCCCGGCAGCCCCCGTAGCCCGTTATTTGTCCTTTGAGCAAATCCAGGA
GGAAGTGACCAAGGCCATGTCCTCGAGTGCAGTAGTGGACGCGACTCTGA
AGCAATTGAAGGCCTCGGGCGTCCTATCAAAATTCGAGAGCATCAGTGCA
AAGGGATTGAGGCGGTACAGTGCCGAGCAATTTGAACAAACGACAGGATT
TCCACCTCAAGACGTGGAGAGCGGTGGGACGCAGGATGACTTGAAATGGG
CGTTGGGGGCAGTGATGGCGGCCAGTACGGTCGTGGTGATTGGTGCGAGT
TTCTTGGGAGGATTTGTGGGCACATTGCTTGTGTATCTGTTTTTGTTGAT
TCCTATCACCTTCATTGGGGTTGGTTCCGTCGCGCCGGGTGTCATTTCTG
TCCTTGTGGTGTTGGTGAACAACCTCCTGGATGGGAAGCAAGCGGAGCGG
AGAGCGACGCACCAAGCAGCAAGGTTTTTGAGTGGCTACTTGCTTGGACT
GCCCATTGAGAGCGTCAAGACGGAGGGAGAGGGAGGGACTACGTTCATCA
AGTTCTTTGACACGGTCGATGGGAATTTCAGGGACCTCGGTGCAGAAGGA
GCGTCAGGGCCAGGGCCAGAGGCAAGGAAGAAGTTCAGCCAGGACGATAT
TTTAGCCCATGCGGTATTGGCGATCAGCGGGTCCGTGGCGGAGAGGATGG
AGTACGGAAAGGTGATTGACCGACAGGCGGACTTCCTCTACCTTGTCGCA
TTGATGGACCTGGTCCGGCCGGCGTTGAGGGCGGGGCAGAAGAATGACCT
GGTGTTGTATTCGGCGCTGACGGCCCATAAAATCTTGGGTGCGAACAAGA
GTAAACTGGAGCGATTGACGGAGAAGGTGGCTGCGAAGGCACCGCTGGCT
GAGCTCGTAGCCGTCGTGGAGGGATAG
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Synonyms
Publications