jgi.p|Nanoce1779_2|603189, mRNA_8579 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603189
Unique Name	mRNA_8579
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1519
Alignment location	scaffold_26:254552..256070 +

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Properties


Property Name	Value
TranscriptId	603275
Track	FilteredModels2
ProteinId	603189

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:254552..256070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603189	gene_8579	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603189	mRNA_8579-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8579	CDS_8579	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:254552..256070+
coding sequence from alignment at scaffold_26:254552..256070+

mRNA sequence

>mRNA_8579 ID=mRNA_8579|Name=jgi.p|Nanoce1779_2|603189|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp
ACAGGAGGAGCAGCAGCACGATCGCCCCCAGCAGCAGGACCGCCCCAACA
GCAGGATACTTGTGTTAGGGCAGCGTGCTGGCGGCACATTGACACCCATT
CCTTGCAGCAGCAGTAGTGGCACCACCGCCACCACCCCCACATCTCCACC
CATCCCTATATACCCTTTCCCCACTATGGCCGCCGCCCTCCACACAACAA
TCAAAGACCTTCTTGTCACTTCCTATCGGCAAATTCGAGCCGCTTCTTAT
GTCCCTCTCGCCAGCTACATCCGCTTCCTCCCAAAGATGAAAAATGGTGA
GACCCCGGCTCAGCTAGAGGCGGAGGGCTTCCCTCTCTTCGGCGATTTGA
TTGACGGCGTACTCATCGCGCTTGGCCTGACCTTGTTGCGTGTTGTGCTA
ACGTATTTGATCTCGCAGCATGTAGGGAGGTGGATCATGAAGCATTCGTA
CTATCGCATGGCGCGAGATGAACGGTTGGAAACTTTCCTGCAGAAGGACC
TGTTACCCTCTCGAAGCAAGATAGCAGGGATGGCCAAGGAGACCAAGTCG
TCCCCGGCAGCTGTGGCAGCCTACTATCGGCGAGCCCGGAACCGTTTGAA
GGAGGAGAAGACGATGCATAAATTCAACGAGGTGATGTGGAAGCTGCTGT
GTCATGTGTTTTTGACTCTCTATGGGGCTTGGGCAGTGTTGTCTCAGGAA
AGGTGGTGGTATGACGTGGATTCGTGTTGGGAGCTGTACCCACACATGAT
CAATACGCGGGCGGCGTATTGGTACTACATGTTCGAGTTCGGGACGTTCG
GGCATGAGATGATGGCGTTGTTTTGGGAGGTGAAACGATCGGATTTCTGG
GCCATGTTCACGCACCACGTGGCGACCTTAATATTGATCGCTGGCTCGTA
CACGTGCAATTTCTTGCCGATTGGGTGCCTCGTGATGATGGCCCATGACC
TTGCAGATTTCTTCTTGGAGATAGCCAAGGTGTTTAACTACATGGTGAAA
GCCCGGCCCTGGGCCCAGAAGATCACAGATGTGTTTTTTGTGTTGTTTGC
GCTGGTTTTCTTCGTGACGCGGCTGGTGATTTTCCCAATTTATATCTGGT
GGGAGAACAGCATGAAAATGCCCAGGAAATATTTCGGGTATCATTATGTA
GGGATGGCGATGTTGAATATGTTTTGCTTGGTGCTGATTATGCTGCATAC
GTATTGGATGTATTTGATTGTACGGATGGCGTTGAAGATGCTGGCGAGTG
GGGAGGCACCAAACGATGAGAGGAGCGATGATGAGGACGAGGAGTTGGAG
GGATCGGATGGGGAGAAAGAGGAATAAATGTTCTCGCTCCCCTGCGTCTG
CTGGTGGTGCCGGTGGTATAGCGTGTGTGAGGGATGTGGTTGGTTGAAAA
GGGAGGGGACTTGTGAGGGAAGGAGGGAGAGAAGGAGAGAGGGAAGGAGA
GAGGGATGGAGGTTGACAAGTGGGGATGCGGCCAAAGTGTGCACAGAATT
GTTGTCAGAATGGGAAGAT

protein sequence of jgi.p|Nanoce1779_2|603189

>mRNA_8579-protein ID=mRNA_8579-protein|Name=jgi.p|Nanoce1779_2|603189|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MAAALHTTIKDLLVTSYRQIRAASYVPLASYIRFLPKMKNGETPAQLEAE
GFPLFGDLIDGVLIALGLTLLRVVLTYLISQHVGRWIMKHSYYRMARDER
LETFLQKDLLPSRSKIAGMAKETKSSPAAVAAYYRRARNRLKEEKTMHKF
NEVMWKLLCHVFLTLYGAWAVLSQERWWYDVDSCWELYPHMINTRAAYWY
YMFEFGTFGHEMMALFWEVKRSDFWAMFTHHVATLILIAGSYTCNFLPIG
CLVMMAHDLADFFLEIAKVFNYMVKARPWAQKITDVFFVLFALVFFVTRL
VIFPIYIWWENSMKMPRKYFGYHYVGMAMLNMFCLVLIMLHTYWMYLIVR
MALKMLASGEAPNDERSDDEDEELEGSDGEKEE*

mRNA from alignment at scaffold_26:254552..256070+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8579 ID=mRNA_8579|Name=jgi.p|Nanoce1779_2|603189|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp|location=Sequence derived from alignment at scaffold_26:254552..256070+ (Nannochloropsis oceanica)
ACAGGAGGAGCAGCAGCACGATCGCCCCCAGCAGCAGGACCGCCCCAACA
GCAGGATACTTGTGTTAGGGCAGCGTGCTGGCGGCACATTGACACCCATT
CCTTGCAGCAGCAGTAGTGGCACCACCGCCACCACCCCCACATCTCCACC
CATCCCTATATACCCTTTCCCCACTATGGCCGCCGCCCTCCACACAACAA
TCAAAGACCTTCTTGTCACTTCCTATCGGCAAATTCGAGCCGCTTCTTAT
GTCCCTCTCGCCAGCTACATCCGCTTCCTCCCAAAGATGAAAAATGGTGA
GACCCCGGCTCAGCTAGAGGCGGAGGGCTTCCCTCTCTTCGGCGATTTGA
TTGACGGCGTACTCATCGCGCTTGGCCTGACCTTGTTGCGTGTTGTGCTA
ACGTATTTGATCTCGCAGCATGTAGGGAGGTGGATCATGAAGCATTCGTA
CTATCGCATGGCGCGAGATGAACGGTTGGAAACTTTCCTGCAGAAGGACC
TGTTACCCTCTCGAAGCAAGATAGCAGGGATGGCCAAGGAGACCAAGTCG
TCCCCGGCAGCTGTGGCAGCCTACTATCGGCGAGCCCGGAACCGTTTGAA
GGAGGAGAAGACGATGCATAAATTCAACGAGGTGATGTGGAAGCTGCTGT
GTCATGTGTTTTTGACTCTCTATGGGGCTTGGGCAGTGTTGTCTCAGGAA
AGGTGGTGGTATGACGTGGATTCGTGTTGGGAGCTGTACCCACACATGAT
CAATACGCGGGCGGCGTATTGGTACTACATGTTCGAGTTCGGGACGTTCG
GGCATGAGATGATGGCGTTGTTTTGGGAGGTGAAACGATCGGATTTCTGG
GCCATGTTCACGCACCACGTGGCGACCTTAATATTGATCGCTGGCTCGTA
CACGTGCAATTTCTTGCCGATTGGGTGCCTCGTGATGATGGCCCATGACC
TTGCAGATTTCTTCTTGGAGATAGCCAAGGTGTTTAACTACATGGTGAAA
GCCCGGCCCTGGGCCCAGAAGATCACAGATGTGTTTTTTGTGTTGTTTGC
GCTGGTTTTCTTCGTGACGCGGCTGGTGATTTTCCCAATTTATATCTGGT
GGGAGAACAGCATGAAAATGCCCAGGAAATATTTCGGGTATCATTATGTA
GGGATGGCGATGTTGAATATGTTTTGCTTGGTGCTGATTATGCTGCATAC
GTATTGGATGTATTTGATTGTACGGATGGCGTTGAAGATGCTGGCGAGTG
GGGAGGCACCAAACGATGAGAGGAGCGATGATGAGGACGAGGAGTTGGAG
GGATCGGATGGGGAGAAAGAGGAATAAATGTTCTCGCTCCCCTGCGTCTG
CTGGTGGTGCCGGTGGTATAGCGTGTGTGAGGGATGTGGTTGGTTGAAAA
GGGAGGGGACTTGTGAGGGAAGGAGGGAGAGAAGGAGAGAGGGAAGGAGA
GAGGGATGGAGGTTGACAAGTGGGGATGCGGCCAAAGTGTGCACAGAATT
GTTGTCAGAATGGGAAGAT

Coding sequence (CDS) from alignment at scaffold_26:254552..256070+

>mRNA_8579 ID=mRNA_8579|Name=jgi.p|Nanoce1779_2|603189|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_26:254552..256070+ (Nannochloropsis oceanica)
ATGGCCGCCGCCCTCCACACAACAATCAAAGACCTTCTTGTCACTTCCTA
TCGGCAAATTCGAGCCGCTTCTTATGTCCCTCTCGCCAGCTACATCCGCT
TCCTCCCAAAGATGAAAAATGGTGAGACCCCGGCTCAGCTAGAGGCGGAG
GGCTTCCCTCTCTTCGGCGATTTGATTGACGGCGTACTCATCGCGCTTGG
CCTGACCTTGTTGCGTGTTGTGCTAACGTATTTGATCTCGCAGCATGTAG
GGAGGTGGATCATGAAGCATTCGTACTATCGCATGGCGCGAGATGAACGG
TTGGAAACTTTCCTGCAGAAGGACCTGTTACCCTCTCGAAGCAAGATAGC
AGGGATGGCCAAGGAGACCAAGTCGTCCCCGGCAGCTGTGGCAGCCTACT
ATCGGCGAGCCCGGAACCGTTTGAAGGAGGAGAAGACGATGCATAAATTC
AACGAGGTGATGTGGAAGCTGCTGTGTCATGTGTTTTTGACTCTCTATGG
GGCTTGGGCAGTGTTGTCTCAGGAAAGGTGGTGGTATGACGTGGATTCGT
GTTGGGAGCTGTACCCACACATGATCAATACGCGGGCGGCGTATTGGTAC
TACATGTTCGAGTTCGGGACGTTCGGGCATGAGATGATGGCGTTGTTTTG
GGAGGTGAAACGATCGGATTTCTGGGCCATGTTCACGCACCACGTGGCGA
CCTTAATATTGATCGCTGGCTCGTACACGTGCAATTTCTTGCCGATTGGG
TGCCTCGTGATGATGGCCCATGACCTTGCAGATTTCTTCTTGGAGATAGC
CAAGGTGTTTAACTACATGGTGAAAGCCCGGCCCTGGGCCCAGAAGATCA
CAGATGTGTTTTTTGTGTTGTTTGCGCTGGTTTTCTTCGTGACGCGGCTG
GTGATTTTCCCAATTTATATCTGGTGGGAGAACAGCATGAAAATGCCCAG
GAAATATTTCGGGTATCATTATGTAGGGATGGCGATGTTGAATATGTTTT
GCTTGGTGCTGATTATGCTGCATACGTATTGGATGTATTTGATTGTACGG
ATGGCGTTGAAGATGCTGGCGAGTGGGGAGGCACCAAACGATGAGAGGAG
CGATGATGAGGACGAGGAGTTGGAGGGATCGGATGGGGAGAAAGAGGAAT
AA

Synonyms

Publications