jgi.p|Nanoce1779_2|603183, mRNA_8578 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603183
Unique NamemRNA_8578
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length954
Alignment locationscaffold_26:252664..254078 -

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Properties
Property NameValue
TranscriptId603269
TrackFilteredModels2
ProteinId603183
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:252664..254078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603183gene_8578Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603183mRNA_8578-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8578CDS_8578Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8578 ID=mRNA_8578|Name=jgi.p|Nanoce1779_2|603183|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
AGGGCACTCCCTTACACGCCGCCGCCGCCACTCCGGTCGGCTTGCTTCAT
CTCCAAGCGCCATGCTCATTCCCATTCGCCTCCCCGCGTCTGCCAGCACG
AACCAAGGCCCAAGCGGGTCCCCAAACACACCAGCAGCCGCTGGAAGCGA
CCTTTCCAACACCCCCGCAACAGCATCAGCAGAAGTAACAGCAGCTCCGC
CTGATGAATGGTCGTTGATTGAGCTGAACGGCTCATTGAATTGTACGGGC
GGCGCTAATCATGCCGCGACTGGAGAAGGGTTGGGCGGGTTGCCCTTGGG
TCAGCTCTCTTTTCCCGTGCCAGACAAGCCCGTCTTGGTGATTGGTGCCC
ACAAGCTGGAGGGAGTGATGGTCACATTGCCCAAGCCCTTCCTCATTATG
CGCAAGAGGAAACTTCCGTGCAAAGGAACACTCACACAAGGGAAAGGAAA
GCGGAGGATGAGCGGGGGGAGTGAGGGGGCTGGAGAAGAGACAACGACGC
CGAAGGGAAAGAGTAGCAATAGCGCAGGTATGCATTTATGAGCGAGCAGA
AAGGAGTGGAAGATAATGTGTCCAGTAGGATAAATAGAGTGTAGGGACAC
TTTTTGTTGATCTTATCATTATCATTTTCCCCAAAATTTAGCCCTCTCCC
TTACATCTACACACAACCAAACAGGCATGCCAGGTAGCTTGGGCAGTTTG
GGGAGGCCCATGACTTTGACAGGCCCTTCGACAGAGGAAGACGGGCAACA
AGGATCCGATACGGAATATGAAGTGGTGGGGATTGTACGGCAGAAGTTAT
TATTCAAAGAACGGCCCAAGCCCATTGTGTCGCGGCACTTGCTGCAGCGG
TAGGTGTAGCGCAGGGAGGGGGGAGCGTGGGATAGTTGATAATCAAGAGT
ATTACGTTTTGAGGAAGCGCTAGAAAAATAAAAAAGCTTGAAGACAGAAA
AATA
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protein sequence of jgi.p|Nanoce1779_2|603183

>mRNA_8578-protein ID=mRNA_8578-protein|Name=jgi.p|Nanoce1779_2|603183|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MLIPIRLPASASTNQGPSGSPNTPAAAGSDLSNTPATASAEVTAAPPDEW
SLIELNGSLNCTGGANHAATGEGLGGLPLGQLSFPVPDKPVLVIGAHKLE
GVMVTLPKPFLIMRKRKLPCKGTLTQGKGKRRMSGGSEGAGEETTTPKGK
SSNSAGMHL*
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mRNA from alignment at scaffold_26:252664..254078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8578 ID=mRNA_8578|Name=jgi.p|Nanoce1779_2|603183|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at scaffold_26:252664..254078- (Nannochloropsis oceanica)
AGGGCACTCCCTTACACGCCGCCGCCGCCACTCCGGTCGGCTTGCTTCAT
CTCCAAGCGCCATGCTCATTCCCATTCGCCTCCCCGCGTCTGCCAGCACG
AACCAAGGCCCAAGCGGGTCCCCAAACACACCAGCAGCCGCTGGAAGCGA
CCTTTCCAACACCCCCGCAACAGCATCAGCAGAAGTAACAGCAGCTCCGC
CTGATGAATGGTCGTTGATTGAGCTGAACGGCTCATTGAATTGTACGGGC
GGCGCTAATCATGCCGCGACTGGAGAAGGGTTGGGCGGGTTGCCCTTGGG
TCAGCTCTCTTTTCCCGTGCCAGACAAGGTGAGAAAGTAGATTGAGGATG
TGGTGACAACTGAAAAGAATAGAGGCTGAATAGATCCCTGGTGAAGGGAA
GGGAGGGGAAATGTGATGGTATGACATGCATTTCGTTGTGCGTCTGTGTG
CGAGTATGCCCTCCCTCTTTCTTGTTGCAACACAAAGTTGGCGTTTGCTG
TGTTCAACGAAGTATGCGTGAGAAAGCGACGACATGAATCACGCACTGGC
GAAAGTTGTGGCTACCTAAAATGTGCTTGGCCACCTTTCATTACACAAGC
GCGCACACAATCCTCAATTGTCTTTCCCCTATCCAACTTTGATCCTCCTC
AATGCAGGAAATGTCACACTCGAAAGTCTTGAGAATCAAAATTGCGCTTT
TCATCATATTTTGCAATGAGTTTACTGCTATCGTATTCATCTCTCACACC
TTCCTCCTATCCAACCTCCCTCCCTCCCTCTCCCTCCAGCCCGTCTTGGT
GATTGGTGCCCACAAGCTGGAGGGAGTGATGGTCACATTGCCCAAGCCCT
TCCTCATTATGCGCAAGAGGAAACTTCCGTGCAAAGGAACACTCACACAA
GGGAAAGGAAAGCGGAGGATGAGCGGGGGGAGTGAGGGGGCTGGAGAAGA
GACAACGACGCCGAAGGGAAAGAGTAGCAATAGCGCAGGTATGCATTTAT
GAGCGAGCAGAAAGGAGTGGAAGATAATGTGTCCAGTAGGATAAATAGAG
TGTAGGGACACTTTTTGTTGATCTTATCATTATCATTTTCCCCAAAATTT
AGCCCTCTCCCTTACATCTACACACAACCAAACAGGCATGCCAGGTAGCT
TGGGCAGTTTGGGGAGGCCCATGACTTTGACAGGCCCTTCGACAGAGGAA
GACGGGCAACAAGGATCCGATACGGAATATGAAGTGGTGGGGATTGTACG
GCAGAAGTTATTATTCAAAGAACGGCCCAAGCCCATTGTGTCGCGGCACT
TGCTGCAGCGGTAGGTGTAGCGCAGGGAGGGGGGAGCGTGGGATAGTTGA
TAATCAAGAGTATTACGTTTTGAGGAAGCGCTAGAAAAATAAAAAAGCTT
GAAGACAGAAAAATA
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Coding sequence (CDS) from alignment at scaffold_26:252664..254078-

>mRNA_8578 ID=mRNA_8578|Name=jgi.p|Nanoce1779_2|603183|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_26:252664..254078- (Nannochloropsis oceanica)
CCCGTCTTGGTGATTGGTGCCCACAAGCTGGAGGGAGTGATGGTCACATT
GCCCAAGCCCTTCCTCATTATGCGCAAGAGGAAACTTCCGTGCAAAGGAA
CACTCACACAAGGGAAAGGAAAGCGGAGGATGAGCGGGGGGAGTGAGGGG
GCTGGAGAAGAGACAACGACGCCGAAGGGAAAGAGTAGCAATAGCGCAGG
TATGCATTTATGAATGCTCATTCCCATTCGCCTCCCCGCGTCTGCCAGCA
CGAACCAAGGCCCAAGCGGGTCCCCAAACACACCAGCAGCCGCTGGAAGC
GACCTTTCCAACACCCCCGCAACAGCATCAGCAGAAGTAACAGCAGCTCC
GCCTGATGAATGGTCGTTGATTGAGCTGAACGGCTCATTGAATTGTACGG
GCGGCGCTAATCATGCCGCGACTGGAGAAGGGTTGGGCGGGTTGCCCTTG
GGTCAGCTCTCTTTTCCCGTGCCAGACAAGCCCGTCTTGGTGATTGGTGC
CCACAAGCTGGAGGGAGTGATGGTCACATTGCCCAAGCCCTTCCTCATTA
TGCGCAAGAGGAAACTTCCGTGCAAAGGAACACTCACACAAGGGAAAGGA
AAGCGGAGGATGAGCGGGGGGAGTGAGGGGGCTGGAGAAGAGACAACGAC
GCCGAAGGGAAAGAGTAGCAATAGCGCAGGTATGCATTTATGAATGCTCA
TTCCCATTCGCCTCCCCGCGTCTGCCAGCACGAACCAAGGCCCAAGCGGG
TCCCCAAACACACCAGCAGCCGCTGGAAGCGACCTTTCCAACACCCCCGC
AACAGCATCAGCAGAAGTAACAGCAGCTCCGCCTGATGAATGGTCGTTGA
TTGAGCTGAACGGCTCATTGAATTGTACGGGCGGCGCTAATCATGCCGCG
ACTGGAGAAGGGTTGGGCGGGTTGCCCTTGGGTCAGCTCTCTTTTCCCGT
GCCAGACAAG
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Synonyms
Publications