jgi.p|Nanoce1779_2|209060, mRNA_8576 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|209060
Unique Name	mRNA_8576
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2461
Alignment location	scaffold_26:246515..248975 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	209146
Track	FilteredModels2
ProteinId	209060

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:246515..248975 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|209060	gene_8576	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|209060	mRNA_8576-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8576	CDS_8576	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:246515..248975-
coding sequence from alignment at scaffold_26:246515..248975-

mRNA sequence

>mRNA_8576 ID=mRNA_8576|Name=jgi.p|Nanoce1779_2|209060|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
AGGCTGCCTCTATCAACCCAAATCCATTTTATCACTGGACGTTGACAACG
CAATCCCAACGCCTAGCAGCAGCATCACCAGCACCACGAATGGAAGCAGC
CGCAGTACATCTCCCACTCACCCAGGTGGAGTCCACCACGGGTCTCCACA
CCACCACCACCATCACCGTCAGCAGCAGCAGCCGTTCGGCCCCCCTCAAG
CCTACCCCTGGCGTGATGGTTACAAAGTCACCTCTTCCGAAGCCCTAGAC
CTACAGCCTTTGTTAAACAGTCGCTTAACCGGGTATGGTGGCGCCGACGT
GGCCACCTCCTTCCTGTCCCCCCCCTTCAAAAACGACGGAGGCAAGCACT
ACTCCCTCTGGCTGCTCGGCGACACGTTCCTGGGCAAGATGATAGAAGGG
GCAAACGGAGAAAAAAAAAGAGTGCCGGGCTATTTCGTGCATAACTCGGT
GGCGCTCATCCCCGTGTGGGAGGCACCAGGGGAGGAGGCAGATCCTGTAG
AGGTCGTGTTTTGGCACGGCCTTTCCTCCACTTCTTCCTCCTCTGAGAAC
GGAAGGAAAGACAGGGGCGTGTCTCCTTTTCCCTCTCCTTCCTTAGACGA
GGGCGGGAAGGAGGGAGGGAGGGAGGAAGGGGGTGGATGCCCGGAGTCCC
TGTTTCGTGTGGCAATGGAGAGTGCGAGGAAGGACGAGAATGAGTGTCAT
GAGGGGGGGGAATACCTCTGGCCTATATCTGGCTTGGGTGTCGATCTATC
TTCCAGCAGCAGCAGCAGCAACAGCGTCAGCAGTAACAGTAGTAGCAGCA
GCAGCAGTATCGGAGGTAGTAGTAATAGCAGCGGTAGCAACTACAACAAC
AACAATGACTACGCATCTTCCCTGATACTCCTCGCCACCCGCTGGGCCTA
CCTCCCTTGGATTGAAACGGACGTGAACCTTACACGCAGCGTGTTTAATT
TCCAGGTGCTGGGGACAACGTTAATAGTGGTGGACAACACACATCTTCCC
CCACCTCAGTGGAGCTATCGTTTGAAAGACCTCCCCTTCACCTCCTCGAG
CGACAACTGGTTCCAGGCCATGGCCCTCGCCAGGGAGGAGGAGGAGCAGG
AAGGGGAGCAGGGGGGAGGAAGCGATGGAAGGAGGAGGAGAGGATTTGTG
GCACGCAACGTGGAGGAAATGGTGTATTTGATGGGCACGACGTCTAGGTT
GGAGGAGGGAGGGACGGAGGAAGGGAAGGAGGGAGAGGGAGTGCCGAGGC
AGATTCTGGGAAAAGTTCCCGTGAAAGGGCTTTTGGATTTGAGCTTGCAG
GGGATGGAGGTGTGGGGGAGTAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAGAAGTGAAAGTGATGGGGCTACAGCAGCAGCAAGAGCAGCCG
TAGCTGTGCCAGCAGCAGATGGAGGAGCAGCCGCATCGGTTCCGTCAACA
ATCTCCGAGAACGACAGTGTCCCACCACCCTCTTCCACCTCCTCCTCCAC
ACTATTCTGGGCCCCCCTTTCCCTCTATGTCAGTTCATCGTCGTCATCGT
CGTCCTCCTCCACTTTTGTCCCCTCCACCATCCTCTCTCCCGTCTACACT
GGTATCTCCCTCCATTTCCATCCCTACCTCCAACGGTGGTACTCCATCTC
CATCGACTGGATCAACAAAATCGTACTCTTACAATCTTCCCGTCTCATCA
CGGGGCCCTGGGACAGCACCCCCATCTATTCCCTCCCTTCCCCCTTCAAC
AGCTCAACCCTCATGGCGTACTCGGGCAAGGCCCATCCAGAGCTTGCTAC
GAAGGATAATGAAATTGTTTTCACCTACGTCGTGAACACGCCTGGGGTAG
TGTACCCACTGTTTGAAGAAGGGGCGGATGTGCTCTATGTGCCTCGATTT
ATACGACTGGTGTTCGAGAAAGAGAAGGGGAAAGAGGGGGAGGGAGGAAA
GGGGGGAGGAAAGCGGGGTTTACGGAATGGGAAATTGATGATTGAGGGAG
AGGAGGGAGAGGGAGATGAGTCATCATCTTTGATTGAAGTGGCTGAGGGA
GGGAGCCTTTTGAGAAAGAGTTGGTAGGTGGTGAGGGATAAGGAGGAGGA
GGAGAAGGAGGATACGGAAGAGGAGATAAAACGCATGAGAAGAAAGACTC
GAGAGAAGGGTTTGCGCTGATTGTAGGATACGTATGGCAAAGCAAGCATG
CAGGCAGTAGGGCTCCGAAGAAAGCTCTTTTAGAAATACGAAATCGGAGG
TCTGTGCTACGAAGAGTGACAGAAGCTGTCTCTAGAGGTATGCAATCGCC
ATTGTGAATATCGTCTGAGGTGAAAGAAGCGGCCGGCTGCAGCGCCTGTG
TGTGCGTGTCACACTGACTGGTTGGCTTGAGAGGGAATATCGAGAAAAAA
TAATGTATTATAAAAGTAATAAAAGTACCCAGCTACAAGAGAAGGCTAGC
TTTAGAAAAAT

protein sequence of jgi.p|Nanoce1779_2|209060

>mRNA_8576-protein ID=mRNA_8576-protein|Name=jgi.p|Nanoce1779_2|209060|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MIEGANGEKKRVPGYFVHNSVALIPVWEAPGEEADPVEVVFWHGLSSTSS
SSENGRKDRGVSPFPSPSLDEGGKEGGREEGGGCPESLFRVAMESARKDE
NECHEGGEYLWPISGLGVDLSSSSSSSNSVSSNSSSSSSSIGGSSNSSGS
NYNNNNDYASSLILLATRWAYLPWIETDVNLTRSVFNFQVLGTTLIVVDN
THLPPPQWSYRLKDLPFTSSSDNWFQAMALAREEEEQEGEQGGGSDGRRR
RGFVARNVEEMVYLMGTTSRLEEGGTEEGKEGEGVPRQILGKVPVKGLLD
LSLQGMEVWGSNSSSSSSSSSSSRSESDGATAAARAAVAVPAADGGAAAS
VPSTISENDSVPPPSSTSSSTLFWAPLSLYVSSSSSSSSSSTFVPSTILS
PVYTGISLHFHPYLQRWYSISIDWINKIVLLQSSRLITGPWDSTPIYSLP
SPFNSSTLMAYSGKAHPELATKDNEIVFTYVVNTPGVVYPLFEEGADVLY
VPRFIRLVFEKEKGKEGEGGKGGGKRGLRNGKLMIEGEEGEGDESSSLIE
VAEGGSLLRKSW*

mRNA from alignment at scaffold_26:246515..248975-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8576 ID=mRNA_8576|Name=jgi.p|Nanoce1779_2|209060|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at scaffold_26:246515..248975- (Nannochloropsis oceanica)
AGGCTGCCTCTATCAACCCAAATCCATTTTATCACTGGACGTTGACAACG
CAATCCCAACGCCTAGCAGCAGCATCACCAGCACCACGAATGGAAGCAGC
CGCAGTACATCTCCCACTCACCCAGGTGGAGTCCACCACGGGTCTCCACA
CCACCACCACCATCACCGTCAGCAGCAGCAGCCGTTCGGCCCCCCTCAAG
CCTACCCCTGGCGTGATGGTTACAAAGTCACCTCTTCCGAAGCCCTAGAC
CTACAGCCTTTGTTAAACAGTCGCTTAACCGGGTATGGTGGCGCCGACGT
GGCCACCTCCTTCCTGTCCCCCCCCTTCAAAAACGACGGAGGCAAGCACT
ACTCCCTCTGGCTGCTCGGCGACACGTTCCTGGGCAAGATGATAGAAGGG
GCAAACGGAGAAAAAAAAAGAGTGCCGGGCTATTTCGTGCATAACTCGGT
GGCGCTCATCCCCGTGTGGGAGGCACCAGGGGAGGAGGCAGATCCTGTAG
AGGTCGTGTTTTGGCACGGCCTTTCCTCCACTTCTTCCTCCTCTGAGAAC
GGAAGGAAAGACAGGGGCGTGTCTCCTTTTCCCTCTCCTTCCTTAGACGA
GGGCGGGAAGGAGGGAGGGAGGGAGGAAGGGGGTGGATGCCCGGAGTCCC
TGTTTCGTGTGGCAATGGAGAGTGCGAGGAAGGACGAGAATGAGTGTCAT
GAGGGGGGGGAATACCTCTGGCCTATATCTGGCTTGGGTGTCGATCTATC
TTCCAGCAGCAGCAGCAGCAACAGCGTCAGCAGTAACAGTAGTAGCAGCA
GCAGCAGTATCGGAGGTAGTAGTAATAGCAGCGGTAGCAACTACAACAAC
AACAATGACTACGCATCTTCCCTGATACTCCTCGCCACCCGCTGGGCCTA
CCTCCCTTGGATTGAAACGGACGTGAACCTTACACGCAGCGTGTTTAATT
TCCAGGTGCTGGGGACAACGTTAATAGTGGTGGACAACACACATCTTCCC
CCACCTCAGTGGAGCTATCGTTTGAAAGACCTCCCCTTCACCTCCTCGAG
CGACAACTGGTTCCAGGCCATGGCCCTCGCCAGGGAGGAGGAGGAGCAGG
AAGGGGAGCAGGGGGGAGGAAGCGATGGAAGGAGGAGGAGAGGATTTGTG
GCACGCAACGTGGAGGAAATGGTGTATTTGATGGGCACGACGTCTAGGTT
GGAGGAGGGAGGGACGGAGGAAGGGAAGGAGGGAGAGGGAGTGCCGAGGC
AGATTCTGGGAAAAGTTCCCGTGAAAGGGCTTTTGGATTTGAGCTTGCAG
GGGATGGAGGTGTGGGGGAGTAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAGAAGTGAAAGTGATGGGGCTACAGCAGCAGCAAGAGCAGCCG
TAGCTGTGCCAGCAGCAGATGGAGGAGCAGCCGCATCGGTTCCGTCAACA
ATCTCCGAGAACGACAGTGTCCCACCACCCTCTTCCACCTCCTCCTCCAC
ACTATTCTGGGCCCCCCTTTCCCTCTATGTCAGTTCATCGTCGTCATCGT
CGTCCTCCTCCACTTTTGTCCCCTCCACCATCCTCTCTCCCGTCTACACT
GGTATCTCCCTCCATTTCCATCCCTACCTCCAACGGTGGTACTCCATCTC
CATCGACTGGATCAACAAAATCGTACTCTTACAATCTTCCCGTCTCATCA
CGGGGCCCTGGGACAGCACCCCCATCTATTCCCTCCCTTCCCCCTTCAAC
AGCTCAACCCTCATGGCGTACTCGGGCAAGGCCCATCCAGAGCTTGCTAC
GAAGGATAATGAAATTGTTTTCACCTACGTCGTGAACACGCCTGGGGTAG
TGTACCCACTGTTTGAAGAAGGGGCGGATGTGCTCTATGTGCCTCGATTT
ATACGACTGGTGTTCGAGAAAGAGAAGGGGAAAGAGGGGGAGGGAGGAAA
GGGGGGAGGAAAGCGGGGTTTACGGAATGGGAAATTGATGATTGAGGGAG
AGGAGGGAGAGGGAGATGAGTCATCATCTTTGATTGAAGTGGCTGAGGGA
GGGAGCCTTTTGAGAAAGAGTTGGTAGGTGGTGAGGGATAAGGAGGAGGA
GGAGAAGGAGGATACGGAAGAGGAGATAAAACGCATGAGAAGAAAGACTC
GAGAGAAGGGTTTGCGCTGATTGTAGGATACGTATGGCAAAGCAAGCATG
CAGGCAGTAGGGCTCCGAAGAAAGCTCTTTTAGAAATACGAAATCGGAGG
TCTGTGCTACGAAGAGTGACAGAAGCTGTCTCTAGAGGTATGCAATCGCC
ATTGTGAATATCGTCTGAGGTGAAAGAAGCGGCCGGCTGCAGCGCCTGTG
TGTGCGTGTCACACTGACTGGTTGGCTTGAGAGGGAATATCGAGAAAAAA
TAATGTATTATAAAAGTAATAAAAGTACCCAGCTACAAGAGAAGGCTAGC
TTTAGAAAAAT

Coding sequence (CDS) from alignment at scaffold_26:246515..248975-

>mRNA_8576 ID=mRNA_8576|Name=jgi.p|Nanoce1779_2|209060|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at scaffold_26:246515..248975- (Nannochloropsis oceanica)
ATGATAGAAGGGGCAAACGGAGAAAAAAAAAGAGTGCCGGGCTATTTCGT
GCATAACTCGGTGGCGCTCATCCCCGTGTGGGAGGCACCAGGGGAGGAGG
CAGATCCTGTAGAGGTCGTGTTTTGGCACGGCCTTTCCTCCACTTCTTCC
TCCTCTGAGAACGGAAGGAAAGACAGGGGCGTGTCTCCTTTTCCCTCTCC
TTCCTTAGACGAGGGCGGGAAGGAGGGAGGGAGGGAGGAAGGGGGTGGAT
GCCCGGAGTCCCTGTTTCGTGTGGCAATGGAGAGTGCGAGGAAGGACGAG
AATGAGTGTCATGAGGGGGGGGAATACCTCTGGCCTATATCTGGCTTGGG
TGTCGATCTATCTTCCAGCAGCAGCAGCAGCAACAGCGTCAGCAGTAACA
GTAGTAGCAGCAGCAGCAGTATCGGAGGTAGTAGTAATAGCAGCGGTAGC
AACTACAACAACAACAATGACTACGCATCTTCCCTGATACTCCTCGCCAC
CCGCTGGGCCTACCTCCCTTGGATTGAAACGGACGTGAACCTTACACGCA
GCGTGTTTAATTTCCAGGTGCTGGGGACAACGTTAATAGTGGTGGACAAC
ACACATCTTCCCCCACCTCAGTGGAGCTATCGTTTGAAAGACCTCCCCTT
CACCTCCTCGAGCGACAACTGGTTCCAGGCCATGGCCCTCGCCAGGGAGG
AGGAGGAGCAGGAAGGGGAGCAGGGGGGAGGAAGCGATGGAAGGAGGAGG
AGAGGATTTGTGGCACGCAACGTGGAGGAAATGGTGTATTTGATGGGCAC
GACGTCTAGGTTGGAGGAGGGAGGGACGGAGGAAGGGAAGGAGGGAGAGG
GAGTGCCGAGGCAGATTCTGGGAAAAGTTCCCGTGAAAGGGCTTTTGGAT
TTGAGCTTGCAGGGGATGGAGGTGTGGGGGAGTAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTAGAAGTGAAAGTGATGGGGCTACAGCAGCAG
CAAGAGCAGCCGTAGCTGTGCCAGCAGCAGATGGAGGAGCAGCCGCATCG
GTTCCGTCAACAATCTCCGAGAACGACAGTGTCCCACCACCCTCTTCCAC
CTCCTCCTCCACACTATTCTGGGCCCCCCTTTCCCTCTATGTCAGTTCAT
CGTCGTCATCGTCGTCCTCCTCCACTTTTGTCCCCTCCACCATCCTCTCT
CCCGTCTACACTGGTATCTCCCTCCATTTCCATCCCTACCTCCAACGGTG
GTACTCCATCTCCATCGACTGGATCAACAAAATCGTACTCTTACAATCTT
CCCGTCTCATCACGGGGCCCTGGGACAGCACCCCCATCTATTCCCTCCCT
TCCCCCTTCAACAGCTCAACCCTCATGGCGTACTCGGGCAAGGCCCATCC
AGAGCTTGCTACGAAGGATAATGAAATTGTTTTCACCTACGTCGTGAACA
CGCCTGGGGTAGTGTACCCACTGTTTGAAGAAGGGGCGGATGTGCTCTAT
GTGCCTCGATTTATACGACTGGTGTTCGAGAAAGAGAAGGGGAAAGAGGG
GGAGGGAGGAAAGGGGGGAGGAAAGCGGGGTTTACGGAATGGGAAATTGA
TGATTGAGGGAGAGGAGGGAGAGGGAGATGAGTCATCATCTTTGATTGAA
GTGGCTGAGGGAGGGAGCCTTTTGAGAAAGAGTTGGTAG

Synonyms

Publications