jgi.p|Nanoce1779_2|546448, mRNA_8575 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546448
Unique Name	mRNA_8575
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1742
Alignment location	scaffold_26:244338..246157 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	546534
Track	FilteredModels2
ProteinId	546448

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:244338..246157 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546448	gene_8575	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546448	mRNA_8575-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8575	CDS_8575	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:244338..246157-
coding sequence from alignment at scaffold_26:244338..246157-

mRNA sequence

>mRNA_8575 ID=mRNA_8575|Name=jgi.p|Nanoce1779_2|546448|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp
ACAGACGAAATGTCGGGCCCGGAAGATGATGCGCCCAAGGCGCCTGCGGC
TGCTGCTGAAGGAGCAGAAGGCACCACCACCAAGGCAGCCGAGGGAGGAG
AGGGAGGGGAAGCAGCAGCGGCAGAGCAAGCCCCTTCGAACGGCGCAGGT
GGTGCGCACAAAGAAGACGAAACTGACCTGCCTGTGGCATCGACCAAGAG
GGAGGAGGGCAGCCCAGAGGAAGGAGAGGAGGGCAAGAACAAGCGCAGCA
AGGACAAAGAACGTCGGCGTCGTTCCCGCTCTCCTCGGGGCAGCAGCCGT
GGCAGGAAGGAGAAGCGAAAGAGCCGCTCTCGTTCCAACAGCCCGCGGGG
GGACAGGAGAAAGCGCAGTCGCGAGCGTGAGCGTGGTAGTGGCAGTCGTC
GCTCCCGTCGCTCGGCGAGCGCGAGTCGAAGCCCATCCCCCTCTTCGTCT
CGACGGGCCCGGCGTCGTGAGAGGGTCAATAACTGGGATAAGCCACCTGA
GGCCGTTCCTGGCCTTGTGACTGGACTGCCTGCCCTAGGAGGATTGACAG
GACTGGGGGGTATGAGCCTGGGAGGTTTGGGTGGTGTTGGTGGCACTGCC
GGTGGGGGTGGCCAGTTTCTGGACCCCCCTATGCTGGATCCGAGCGTAAT
GATGGGGACGTCAGTCCTAGGCCCCGGGGGGGTGGTCAGGGGCGCCATCG
GGACATTGACCGCCCCGACGGCCCCTCCCAACCAGCAAGAACTCTTCAAC
GGCGTCCTCGTTCCCACCATGATGCTCCGCCAAGCCAAGCGCCTGTACGT
CGGGAACGTGCCCATGGGCTGTGACCAGTTCGTCTTGATGCAACTCTTCA
ACCAGGCCATGGTCGCGGCCGGAAAAGGTAGTGCCAGCGCCCCTCCCATC
GTCGGGGTTCAAGTGAATGAAGCTAAGCCGTTCGCTTTCCTCGAAACCCG
CACCCCCGAAGACGCTGCCAACGTCCTCCTCTTCGATGGCATCACCATAG
GCGCCAACCAACTCAAGGTCCGCCGGCCTAAGGATTTTAAACCGCTTCCG
GGTATCATCGACCCTCCCACAGGCACGAGTCTCATCCCTGGACACCTCCC
TACCAGTGTTGAAAACACTGAGAACAAAATCTATCTTGGCTCGATCCCCA
CCCATTTCAATGACCTCCAAGTCCGGGAGCTCGTCTCGGCCTTCGGCGAG
CTCAAGGCTTTCAACCTGGTCAAGGACCCCGCTATGGGGACCAGCAAAGG
CTTCTGTTTCTTTGAATACCTTGATCATTCCCTCACGGACCAAGTGTGTT
CGGAGCTGAATGGCTTCGAACTCGGCGACCGGAAGCTCATCTGTCAACGG
GCAAATCCCTCCCCAGCGTCTGCGGCCGCCACTGCAGCACTTGGCGGCCC
ACCCCTTGGCCCACCTACGAAGGTATTAAAATTGAGCAATATGGTGGTGG
AGGAGGAATTGAAGGATGACTCAGAGTACGAAGAAATCGTGATGGACATC
AAGGAAGAGTGTGGGAAATACGGTAATGTGGTATCGCTGAAGGTGCCGAG
GCCTACATACAAGGAGGACGGGAGCGTGGACGTGTCCCCCCCAGGAGTGG
GGGAGGTGTTTGTGGAGTTCGAGGAGGAGGCAGGGGCCATGAAGGCGGGG
AACGCGCTGAGGAACAGACAATTCTCGGGGCGGACGGTGGTGTGTGGGTT
TGTGAAGGAGGAGGAGTATGCGGCTGGAAATTATTAGGGGGC

protein sequence of jgi.p|Nanoce1779_2|546448

>mRNA_8575-protein ID=mRNA_8575-protein|Name=jgi.p|Nanoce1779_2|546448|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MSGPEDDAPKAPAAAAEGAEGTTTKAAEGGEGGEAAAAEQAPSNGAGGAH
KEDETDLPVASTKREEGSPEEGEEGKNKRSKDKERRRRSRSPRGSSRGRK
EKRKSRSRSNSPRGDRRKRSRERERGSGSRRSRRSASASRSPSPSSSRRA
RRRERVNNWDKPPEAVPGLVTGLPALGGLTGLGGMSLGGLGGVGGTAGGG
GQFLDPPMLDPSVMMGTSVLGPGGVVRGAIGTLTAPTAPPNQQELFNGVL
VPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSASAPPIVGV
QVNEAKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGII
DPPTGTSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGELKA
FNLVKDPAMGTSKGFCFFEYLDHSLTDQVCSELNGFELGDRKLICQRANP
SPASAAATAALGGPPLGPPTKVLKLSNMVVEEELKDDSEYEEIVMDIKEE
CGKYGNVVSLKVPRPTYKEDGSVDVSPPGVGEVFVEFEEEAGAMKAGNAL
RNRQFSGRTVVCGFVKEEEYAAGNY*

mRNA from alignment at scaffold_26:244338..246157-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8575 ID=mRNA_8575|Name=jgi.p|Nanoce1779_2|546448|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at scaffold_26:244338..246157- (Nannochloropsis oceanica)
ACAGACGAAATGTCGGGCCCGGAAGATGATGCGCCCAAGGCGCCTGCGGC
TGCTGCTGAAGGAGCAGAAGGCACCACCACCAAGGCAGCCGAGGGAGGAG
AGGGAGGGGAAGCAGCAGCGGCAGAGCAAGCCCCTTCGAACGGCGCAGGT
GGTGCGCACAAAGAAGACGAAACTGACCTGCCTGTGGCATCGACCAAGAG
GGAGGAGGGCAGCCCAGAGGAAGGAGAGGAGGGCAAGAACAAGCGCAGCA
AGGACAAAGAACGTCGGCGTCGTTCCCGCTCTCCTCGGGGCAGCAGCCGT
GGCAGGAAGGAGAAGCGAAAGAGCCGCTCTCGTTCCAACAGCCCGCGGGG
GGACAGGAGAAAGCGCAGTCGCGAGCGTGAGCGTGGTAGTGGCAGTCGTC
GCTCCCGTCGCTCGGCGAGCGCGAGTCGAAGCCCATCCCCCTCTTCGTCT
CGACGGGCCCGGCGTCGTGAGAGGGTCAATAACTGGGATAAGCCACCTGA
GGCCGTTCCTGGCCTTGTGACTGGACTGCCTGCCCTAGGAGGATTGACAG
GACTGGGGGGTATGAGCCTGGGAGGTTTGGGTGGTGTTGGTGGCACTGCC
GGTGGGGGTGGCCAGTTTCTGGACCCCCCTATGCTGGATCCGAGCGTAAT
GATGGGGACGTCAGTCCTAGGCCCCGGGGGGGTGGTCAGGGGCGCCATCG
GGACATTGACCGCCCCGACGGCCCCTCCCAACCAGCAAGAACTCTTCAAC
GGCGTCCTCGTTCCCACCATGATGCTCCGCCAAGCCAAGCGCCTGTACGT
CGGGAACGTGCCCATGGGCTGTGACCAGTTCGTCTTGATGCAACTCTTCA
ACCAGGCCATGGTCGCGGCCGGAAAAGGTAGTGCCAGCGCCCCTCCCATC
GTCGGGGTTCAAGTGAATGAAGCTAAGCCGTTCGCTTTCCTCGAAACCCG
CACCCCCGAAGACGCTGCCAACGTCCTCCTCTTCGATGGCATCACCATAG
GCGCCAACCAACTCAAGGTCCGCCGGCCTAAGGATTTTAAACCGCTTCCG
GGTATCATCGACCCTCCCACAGGCACGAGTCTCATCCCTGGACACCTCCC
TACCAGTGTTGAAAACACTGAGAACAAAATCTATCTTGGCTCGATCCCCA
CCCATTTCAATGACCTCCAAGTCCGGGAGCTCGTCTCGGCCTTCGGCGAG
CTCAAGGCTTTCAACCTGGTCAAGGACCCCGCTATGGGGACCAGCAAAGG
CTTCTGTTTCTTTGAATACCTTGATCATTCCCTCACGGACCAAGTGTGTT
CGGAGCTGAATGGCTTCGAACTCGGCGACCGGAAGCTCATCTGTCAACGG
GCAAATCCCTCCCCAGCGTCTGCGGCCGCCACTGCAGCACTTGGCGGCGT
CGCTGGCCTCCATCCGTACGCTGCTCTCCTCACTGGTCAAGCAGGAGGAG
GAAGCGGAGGAGGAGGAGCGGTGCAGCCACCCCTTGGCCCACCTACGAAG
GTATTAAAATTGAGCAATATGGTGGTGGAGGAGGAATTGAAGGATGACTC
AGAGTACGAAGAAATCGTGATGGACATCAAGGAAGAGTGTGGGAAATACG
GTAATGTGGTATCGCTGAAGGTGCCGAGGCCTACATACAAGGAGGACGGG
AGCGTGGACGTGTCCCCCCCAGGAGTGGGGGAGGTGTTTGTGGAGTTCGA
GGAGGAGGCAGGGGCCATGAAGGCGGGGAACGCGCTGAGGAACAGACAAT
TCTCGGGGCGGACGGTGGTGTGTGGGTTTGTGAAGGAGGAGGAGTATGCG
GCTGGAAATTATTAGGGGGC

Coding sequence (CDS) from alignment at scaffold_26:244338..246157-

>mRNA_8575 ID=mRNA_8575|Name=jgi.p|Nanoce1779_2|546448|organism=Nannochloropsis oceanica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_26:244338..246157- (Nannochloropsis oceanica)
CCACCCCTTGGCCCACCTACGAAGGTATTAAAATTGAGCAATATGGTGGT
GGAGGAGGAATTGAAGGATGACTCAGAGTACGAAGAAATCGTGATGGACA
TCAAGGAAGAGTGTGGGAAATACGGTAATGTGGTATCGCTGAAGGTGCCG
AGGCCTACATACAAGGAGGACGGGAGCGTGGACGTGTCCCCCCCAGGAGT
GGGGGAGGTGTTTGTGGAGTTCGAGGAGGAGGCAGGGGCCATGAAGGCGG
GGAACGCGCTGAGGAACAGACAATTCTCGGGGCGGACGGTGGTGTGTGGG
TTTGTGAAGGAGGAGGAGTATGCGGCTGGAAATTATTAGATGTCGGGCCC
GGAAGATGATGCGCCCAAGGCGCCTGCGGCTGCTGCTGAAGGAGCAGAAG
GCACCACCACCAAGGCAGCCGAGGGAGGAGAGGGAGGGGAAGCAGCAGCG
GCAGAGCAAGCCCCTTCGAACGGCGCAGGTGGTGCGCACAAAGAAGACGA
AACTGACCTGCCTGTGGCATCGACCAAGAGGGAGGAGGGCAGCCCAGAGG
AAGGAGAGGAGGGCAAGAACAAGCGCAGCAAGGACAAAGAACGTCGGCGT
CGTTCCCGCTCTCCTCGGGGCAGCAGCCGTGGCAGGAAGGAGAAGCGAAA
GAGCCGCTCTCGTTCCAACAGCCCGCGGGGGGACAGGAGAAAGCGCAGTC
GCGAGCGTGAGCGTGGTAGTGGCAGTCGTCGCTCCCGTCGCTCGGCGAGC
GCGAGTCGAAGCCCATCCCCCTCTTCGTCTCGACGGGCCCGGCGTCGTGA
GAGGGTCAATAACTGGGATAAGCCACCTGAGGCCGTTCCTGGCCTTGTGA
CTGGACTGCCTGCCCTAGGAGGATTGACAGGACTGGGGGGTATGAGCCTG
GGAGGTTTGGGTGGTGTTGGTGGCACTGCCGGTGGGGGTGGCCAGTTTCT
GGACCCCCCTATGCTGGATCCGAGCGTAATGATGGGGACGTCAGTCCTAG
GCCCCGGGGGGGTGGTCAGGGGCGCCATCGGGACATTGACCGCCCCGACG
GCCCCTCCCAACCAGCAAGAACTCTTCAACGGCGTCCTCGTTCCCACCAT
GATGCTCCGCCAAGCCAAGCGCCTGTACGTCGGGAACGTGCCCATGGGCT
GTGACCAGTTCGTCTTGATGCAACTCTTCAACCAGGCCATGGTCGCGGCC
GGAAAAGGTAGTGCCAGCGCCCCTCCCATCGTCGGGGTTCAAGTGAATGA
AGCTAAGCCGTTCGCTTTCCTCGAAACCCGCACCCCCGAAGACGCTGCCA
ACGTCCTCCTCTTCGATGGCATCACCATAGGCGCCAACCAACTCAAGGTC
CGCCGGCCTAAGGATTTTAAACCGCTTCCGGGTATCATCGACCCTCCCAC
AGGCACGAGTCTCATCCCTGGACACCTCCCTACCAGTGTTGAAAACACTG
AGAACAAAATCTATCTTGGCTCGATCCCCACCCATTTCAATGACCTCCAA
GTCCGGGAGCTCGTCTCGGCCTTCGGCGAGCTCAAGGCTTTCAACCTGGT
CAAGGACCCCGCTATGGGGACCAGCAAAGGCTTCTGTTTCTTTGAATACC
TTGATCATTCCCTCACGGACCAAGTGTGTTCGGAGCTGAATGGCTTCGAA
CTCGGCGACCGGAAGCTCATCTGTCAACGGGCAAATCCCTCCCCAGCGTC
TGCGGCCGCCACTGCAGCACTTGGCGGCCCACCCCTTGGCCCACCTACGA
AGGTATTAAAATTGAGCAATATGGTGGTGGAGGAGGAATTGAAGGATGAC
TCAGAGTACGAAGAAATCGTGATGGACATCAAGGAAGAGTGTGGGAAATA
CGGTAATGTGGTATCGCTGAAGGTGCCGAGGCCTACATACAAGGAGGACG
GGAGCGTGGACGTGTCCCCCCCAGGAGTGGGGGAGGTGTTTGTGGAGTTC
GAGGAGGAGGCAGGGGCCATGAAGGCGGGGAACGCGCTGAGGAACAGACA
ATTCTCGGGGCGGACGGTGGTGTGTGGGTTTGTGAAGGAGGAGGAGTATG
CGGCTGGAAATTATTAGATGTCGGGCCCGGAAGATGATGCGCCCAAGGCG
CCTGCGGCTGCTGCTGAAGGAGCAGAAGGCACCACCACCAAGGCAGCCGA
GGGAGGAGAGGGAGGGGAAGCAGCAGCGGCAGAGCAAGCCCCTTCGAACG
GCGCAGGTGGTGCGCACAAAGAAGACGAAACTGACCTGCCTGTGGCATCG
ACCAAGAGGGAGGAGGGCAGCCCAGAGGAAGGAGAGGAGGGCAAGAACAA
GCGCAGCAAGGACAAAGAACGTCGGCGTCGTTCCCGCTCTCCTCGGGGCA
GCAGCCGTGGCAGGAAGGAGAAGCGAAAGAGCCGCTCTCGTTCCAACAGC
CCGCGGGGGGACAGGAGAAAGCGCAGTCGCGAGCGTGAGCGTGGTAGTGG
CAGTCGTCGCTCCCGTCGCTCGGCGAGCGCGAGTCGAAGCCCATCCCCCT
CTTCGTCTCGACGGGCCCGGCGTCGTGAGAGGGTCAATAACTGGGATAAG
CCACCTGAGGCCGTTCCTGGCCTTGTGACTGGACTGCCTGCCCTAGGAGG
ATTGACAGGACTGGGGGGTATGAGCCTGGGAGGTTTGGGTGGTGTTGGTG
GCACTGCCGGTGGGGGTGGCCAGTTTCTGGACCCCCCTATGCTGGATCCG
AGCGTAATGATGGGGACGTCAGTCCTAGGCCCCGGGGGGGTGGTCAGGGG
CGCCATCGGGACATTGACCGCCCCGACGGCCCCTCCCAACCAGCAAGAAC
TCTTCAACGGCGTCCTCGTTCCCACCATGATGCTCCGCCAAGCCAAGCGC
CTGTACGTCGGGAACGTGCCCATGGGCTGTGACCAGTTCGTCTTGATGCA
ACTCTTCAACCAGGCCATGGTCGCGGCCGGAAAAGGTAGTGCCAGCGCCC
CTCCCATCGTCGGGGTTCAAGTGAATGAAGCTAAGCCGTTCGCTTTCCTC
GAAACCCGCACCCCCGAAGACGCTGCCAACGTCCTCCTCTTCGATGGCAT
CACCATAGGCGCCAACCAACTCAAGGTCCGCCGGCCTAAGGATTTTAAAC
CGCTTCCGGGTATCATCGACCCTCCCACAGGCACGAGTCTCATCCCTGGA
CACCTCCCTACCAGTGTTGAAAACACTGAGAACAAAATCTATCTTGGCTC
GATCCCCACCCATTTCAATGACCTCCAAGTCCGGGAGCTCGTCTCGGCCT
TCGGCGAGCTCAAGGCTTTCAACCTGGTCAAGGACCCCGCTATGGGGACC
AGCAAAGGCTTCTGTTTCTTTGAATACCTTGATCATTCCCTCACGGACCA
AGTGTGTTCGGAGCTGAATGGCTTCGAACTCGGCGACCGGAAGCTCATCT
GTCAACGGGCAAATCCCTCCCCAGCGTCTGCGGCCGCCACTGCAGCACTT
GGCGGC

Synonyms

Publications