jgi.p|Nanoce1779_2|603165, mRNA_8573 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603165
Unique NamemRNA_8573
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length551
Alignment locationscaffold_26:240219..240769 -

Link to JBrowse

Properties
Property NameValue
TranscriptId603251
TrackFilteredModels2
ProteinId603165
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:240219..240769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603165gene_8573Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603165mRNA_8573-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8573CDS_8573Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8573 ID=mRNA_8573|Name=jgi.p|Nanoce1779_2|603165|organism=Nannochloropsis oceanica|type=mRNA|length=551bp
TTCCCGTCCTCCCCCTCCCCCTCCTCCGCCACAAGCGCCGCCAATGCTGC
TGCTCGTGCTGCTTTCATCCCTCCCCCTTTCCCACCACCTCCACCTCCAG
CTGCTGCTGCTGCTGCTTTTGCTGCATCTTTCTCCTGCTTTTCCTTTTCC
CTCTTCGCTTTTTTGGCCAGCTTCTTATCGACGGGAGAGAGGTTCGCATA
TTCATTATCTGGAGAGGAGGAGGAGGAAGGGGAAGACGGCATGGGAAGGG
GGGCCTCCACTGCTTCCATGGCTTCCAACGCAGCAAGAGCGGCGGCCTTG
GCAGCATCGATGGACTTCTTGGGCTTGGCAAAGAGGAGAGGAAGAGAATA
CTTTCTTTTCGTGGCGCTGGGGATGATAGATGTGGAAGCGAAAGGGAGGC
TGGAGGGTGGGGAAGAGGGAGTCGGGATGGAGAAAGGGAGATGGAAGGCT
TGCGAGAGGAGAGGAAGGGACAGGGTAGCGAGGGCGGCAGTGGCGAGCAA
AACGAGGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAAG
A
back to top

protein sequence of jgi.p|Nanoce1779_2|603165

>mRNA_8573-protein ID=mRNA_8573-protein|Name=jgi.p|Nanoce1779_2|603165|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLLLVLLSSLPLSHHLHLQLLLLLLLLHLSPAFPFPSSLFWPASYRRERG
SHIHYLERRRRKGKTAWEGGPPLLPWLPTQQERRPWQHRWTSWAWQRGEE
ENTFFSWRWG*
back to top

mRNA from alignment at scaffold_26:240219..240769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8573 ID=mRNA_8573|Name=jgi.p|Nanoce1779_2|603165|organism=Nannochloropsis oceanica|type=mRNA|length=551bp|location=Sequence derived from alignment at scaffold_26:240219..240769- (Nannochloropsis oceanica)
TTCCCGTCCTCCCCCTCCCCCTCCTCCGCCACAAGCGCCGCCAATGCTGC
TGCTCGTGCTGCTTTCATCCCTCCCCCTTTCCCACCACCTCCACCTCCAG
CTGCTGCTGCTGCTGCTTTTGCTGCATCTTTCTCCTGCTTTTCCTTTTCC
CTCTTCGCTTTTTTGGCCAGCTTCTTATCGACGGGAGAGAGGTTCGCATA
TTCATTATCTGGAGAGGAGGAGGAGGAAGGGGAAGACGGCATGGGAAGGG
GGGCCTCCACTGCTTCCATGGCTTCCAACGCAGCAAGAGCGGCGGCCTTG
GCAGCATCGATGGACTTCTTGGGCTTGGCAAAGAGGAGAGGAAGAGAATA
CTTTCTTTTCGTGGCGCTGGGGATGATAGATGTGGAAGCGAAAGGGAGGC
TGGAGGGTGGGGAAGAGGGAGTCGGGATGGAGAAAGGGAGATGGAAGGCT
TGCGAGAGGAGAGGAAGGGACAGGGTAGCGAGGGCGGCAGTGGCGAGCAA
AACGAGGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAAG
A
back to top

Coding sequence (CDS) from alignment at scaffold_26:240219..240769-

>mRNA_8573 ID=mRNA_8573|Name=jgi.p|Nanoce1779_2|603165|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_26:240219..240769- (Nannochloropsis oceanica)
ATGCTGCTGCTCGTGCTGCTTTCATCCCTCCCCCTTTCCCACCACCTCCA
CCTCCAGCTGCTGCTGCTGCTGCTTTTGCTGCATCTTTCTCCTGCTTTTC
CTTTTCCCTCTTCGCTTTTTTGGCCAGCTTCTTATCGACGGGAGAGAGGT
TCGCATATTCATTATCTGGAGAGGAGGAGGAGGAAGGGGAAGACGGCATG
GGAAGGGGGGCCTCCACTGCTTCCATGGCTTCCAACGCAGCAAGAGCGGC
GGCCTTGGCAGCATCGATGGACTTCTTGGGCTTGGCAAAGAGGAGAGGAA
GAGAATACTTTCTTTTCGTGGCGCTGGGGATGA
back to top
Synonyms
Publications