jgi.p|Nanoce1779_2|546439, mRNA_8570 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546439
Unique Name	mRNA_8570
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1636
Alignment location	scaffold_26:234514..236503 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	546525
Track	FilteredModels2
ProteinId	546439

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:234514..236503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546439	gene_8570	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546439	mRNA_8570-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8570	CDS_8570	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:234514..236503+
coding sequence from alignment at scaffold_26:234514..236503+

mRNA sequence

>mRNA_8570 ID=mRNA_8570|Name=jgi.p|Nanoce1779_2|546439|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
ACAGGCATCATCCCAGGTCGAATGGTCCATTTCTCATTGTCTTCCTTGCT
GCTATCCCTGCGCTTTTCCACATCACTGCTCATCTGCTCCTTCGTCATCA
CCATGCCCCCCTCCGAAGGCTTTGCCGCCGCGCCTAGCCCCCCTCCTACC
GCTGCTGGCCACAGTGCCACCATTGGAACGCCTACGCACCTGGCTGTGGT
CGTGCACGGATTGGTAGGACGCCCCGACGACTTAAGCTATCTCCGCGAGT
CCATCGAAAAACAGGGACACGGTATTCTCGCACATTGTGCTGCATGCAAC
CTGGACAAGACTTTTGACGGGGTTCAAGCAGGTGGGGAACGCCTGGCAGC
CGAGGTCCGACAAATCGTCGCTGCCAATCCTTCTTTGCATACCATTTCGT
TCATTGGTAACAGCTTAGGAGGAATTTATTCTCGATATGCCATCTCGCTG
CTGTGGCAACCAGAGAGCAAAACCATCCTCGGCCTCACACCGATCACCTT
CATGTCAATCGCCACGCCCCACCTTGGTGTACGGCGCTTCACGGTCATCC
CTCTTCCCGACGTATTACATTTCACCCCACCGTTAGTCATCGGCCAGACG
GGACACGACCTCTTCCTCCGTCCTCCTCCCCCAAGAAGAAGCAGCAGTAG
TAGCAGCGCCAGCACCAGCGAAAGCGACCCTCCTCTCCTACTCAAGATGG
CGTCAGAGAAACGTTTTTTGGAACCCTTGGCGGCATTTAAATATCGGAGG
GCATACGGAAACTTGAAGGATGACATGCTCGTCCCGTTCGGCACGGCCTT
GTTTCACCCTGAAGGAAGAAGGGGCTCTTGGGCGGTTGTGGGTGAGGAGG
AGAGAGATAGAATGGGTAGACTTGCGTCGATTCGTTTGGCTGCTGGTGGT
GCGTTGGGAGGAGAGAATGAGGAATGGATGGAGGAAGCAATGGCAGCGAG
GCTGAACAGCTTAGGCTGGGAAAAGGTTGCTGTGACGTTTCGAGCGCCGT
CATTTTGGTCAGCGCATAATATTATTTGTGCGTTGAGTAGGAGTAGGGTG
GGGACATACTTGTTTAAGAAGGGACGGAGTGTGATGGATCATGCGGCGGG
GAGGATTGCGAGGGCAGCAGCTGAAGAGGACAGGAGCTAGTGGAAGTAGA
AGAAGTAGTAGTAGTAGTGGCTGTAATGTTTGCGGTGGGTGTCGCCACAA
GTTGGCAACGGCCTTTCATTGTTCAAGCAATGCGAAGGGGCAGGATAAGT
GTGTGTGTTTTGGTATGAGGAGGGACGGATAGTGGTTGGGCGTGCGGAGG
GAGGCACCAACAGCAATATCAGCAGTAACGGTAACACAAGCTGCTGCACC
AGCCCCGGCACCAGCTCCATCAGCCCAACCAGTACCAGCAACACAGGAGA
AAAAGCATGGATAATTATGGGCAGGTAAATTGCGGGATCACCCAAGAGTC
CTATCAGCAATAATGGCAATGACGACGAAAGTGTCTGTCAAAATGTGAAA
GAAATTAAACAAAACACGTCTATTAAATGGACATCCGTTAAAGCAAAGAA
TTAGGAAGCAAACTTTCGCGCGCTGATCTTGTCCATCTCGTGTGCCACGG
GTGGCAAGAAAAGCTGGGGGAAAAGACAAGATCAAC

protein sequence of jgi.p|Nanoce1779_2|546439

>mRNA_8570-protein ID=mRNA_8570-protein|Name=jgi.p|Nanoce1779_2|546439|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MVHFSLSSLLLSLRFSTSLLICSFVITMPPSEGFAAAPSPPPTAAGHSAT
IGTPTHLAVVVHGLVGRPDDLSYLRESIEKQGHGILAHCAACNLDKTFDG
VQAGGERLAAEVRQIVAANPSLHTISFIGNSLGGIYSRYAISLLWQPESK
TILGLTPITFMSIATPHLGVRRFTVIPLPDVLHFTPPLVIGQTGHDLFLR
PPPPRRSSSSSSASTSESDPPLLLKMASEKRFLEPLAAFKYRRAYGNLKD
DMLVPFGTALFHPEGRRGSWAVVGEEERDRMGRLASIRLAAGGALGGENE
EWMEEAMAARLNSLGWEKVAVTFRAPSFWSAHNIICALSRSRVGTYLFKK
GRSVMDHAAGRIARAAAEEDRS*

mRNA from alignment at scaffold_26:234514..236503+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8570 ID=mRNA_8570|Name=jgi.p|Nanoce1779_2|546439|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at scaffold_26:234514..236503+ (Nannochloropsis oceanica)
ACAGGCATCATCCCAGGTCGAATGGTCCATTTCTCATTGTCTTCCTTGCT
GCTATCCCTGCGCTTTTCCACATCACTGCTCATCTGCTCCTTCGTCATCA
CCATGCCCCCCTCCGAAGGCTTTGCCGCCGCGCCTAGCCCCCCTCCTACC
GCTGCTGGCCACAGTGCCACCATTGGAACGCCTACGCACCTGGCTGTGGT
CGTGCACGGATTGGTAGGACGCCCCGACGACTTAAGCTATCTCCGCGAGT
CCATCGAAAAACAGGGACACGGTATTCTCGCACATTGTGCTGCATGCAAC
CTGGACAAGACTTTTGACGGGGTTCAAGCAGGTGGGGAACGCCTGGCAGC
CGAGGTCCGACAAATCGTCGCTGCCAATCCTTCTTTGCATACCATTTCGT
TCATTGGTAACAGCTTAGGAGGAATTTATTCTCGATATGCCATCTCGCTG
CTGTGGCAACCAGAGAGCAAAACCATCCTCGGCCTCACACCGATCACCTT
CATGTCAATCGCCACGCCCCACCTTGGTGTACGGCGCTTCACGGTCATCC
CTCTTCCCGACGTATTACATTTCACCCCACCGTTAGTCATCGGCCAGACG
GGACACGACCTCTTCCTCCGTCCTCCTCCCCCAAGAAGAAGCAGCAGTAG
TAGCAGCGCCAGCACCAGCGAAAGCGACCCTCCTCTCCTACTCAAGATGG
CGTCAGAGAAACGTTTTTTGGAACCCTTGGCGGCATTTAAATATCGGAGG
GCATACGGAAACTTGAAGGATGACATGCTCGTCCCGTTCGGCACGGCCTT
GTTTCACCCTGAAGGGTCCACAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGCAGTAGTACCAGCACTA
GTTGTATTACTTATGGTAGTAGTTTTGAACAGAGAGGGCACATCTTGAAG
GAAACTTTAATTTTGCCGACCGTGGAGAAGAATGATGTCAAAATGGAGGT
TTGGGAAATTCCGAGAAGGGAGTGGGTGGAGGAGGAGGAAGGGAGGGAAG
GAGGAGTGGGAGTAGGAAGAAGAAGGGGCTCTTGGGCGGTTGTGGGTGAG
GAGGAGAGAGATAGAATGGGTAGACTTGCGTCGATTCGTTTGGCTGCTGG
TGGTGCGTTGGGAGGAGAGAATGAGGAATGGATGGAGGAAGCAATGGCAG
CGAGGCTGAACAGCTTAGGCTGGGAAAAGGTTGCTGTGACGTTTCGAGCG
CCGTCATTTTGGTCAGCGCATAATATTATTTGTGCGTTGAGTAGGAGTAG
GGTGGGGACATACTTGTTTAAGAAGGGACGGAGTGTGATGGATCATGCGG
CGGGGAGGATTGCGAGGGCAGCAGCTGAAGAGGACAGGAGCTAGTGGAAG
TAGAAGAAGTAGTAGTAGTAGTGGCTGTAATGTTTGCGGTGGGTGTCGCC
ACAAGTTGGCAACGGCCTTTCATTGTTCAAGCAATGCGAAGGGGCAGGAT
AAGTGTGTGTGTTTTGGTATGAGGAGGGACGGATAGTGGTTGGGCGTGCG
GAGGGAGGCACCAACAGCAATATCAGCAGTAACGGTAACACAAGCTGCTG
CACCAGCCCCGGCACCAGCTCCATCAGCCCAACCAGTACCAGCAACACAG
GAGAAAAAGCATGGATAATTATGGGCAGGTAAATTGCGGGATCACCCAAG
AGTCCTATCAGCAATAATGGCAATGACGACGAAAGTGTCTGTCAAAATGT
GAAAGAAATTAAACAAAACACGTCTATTAAATGGACATCCGTTAAAGCAA
AGAATTAGGAAGCAAACTTTCGCGCGCTGATCTTGTCCATCTCGTGTGCC
ACGGGTGGCAAGAAAAGCTGGGGGAAAAGACAAGATCAAC

Coding sequence (CDS) from alignment at scaffold_26:234514..236503+

>mRNA_8570 ID=mRNA_8570|Name=jgi.p|Nanoce1779_2|546439|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_26:234514..236503+ (Nannochloropsis oceanica)
ATGGTCCATTTCTCATTGTCTTCCTTGCTGCTATCCCTGCGCTTTTCCAC
ATCACTGCTCATCTGCTCCTTCGTCATCACCATGCCCCCCTCCGAAGGCT
TTGCCGCCGCGCCTAGCCCCCCTCCTACCGCTGCTGGCCACAGTGCCACC
ATTGGAACGCCTACGCACCTGGCTGTGGTCGTGCACGGATTGGTAGGACG
CCCCGACGACTTAAGCTATCTCCGCGAGTCCATCGAAAAACAGGGACACG
GTATTCTCGCACATTGTGCTGCATGCAACCTGGACAAGACTTTTGACGGG
GTTCAAGCAGGTGGGGAACGCCTGGCAGCCGAGGTCCGACAAATCGTCGC
TGCCAATCCTTCTTTGCATACCATTTCGTTCATTGGTAACAGCTTAGGAG
GAATTTATTCTCGATATGCCATCTCGCTGCTGTGGCAACCAGAGAGCAAA
ACCATCCTCGGCCTCACACCGATCACCTTCATGTCAATCGCCACGCCCCA
CCTTGGTGTACGGCGCTTCACGGTCATCCCTCTTCCCGACGTATTACATT
TCACCCCACCGTTAGTCATCGGCCAGACGGGACACGACCTCTTCCTCCGT
CCTCCTCCCCCAAGAAGAAGCAGCAGTAGTAGCAGCGCCAGCACCAGCGA
AAGCGACCCTCCTCTCCTACTCAAGATGGCGTCAGAGAAACGTTTTTTGG
AACCCTTGGCGGCATTTAAATATCGGAGGGCATACGGAAACTTGAAGGAT
GACATGCTCGTCCCGTTCGGCACGGCCTTGTTTCACCCTGAAGGAAGAAG
GGGCTCTTGGGCGGTTGTGGGTGAGGAGGAGAGAGATAGAATGGGTAGAC
TTGCGTCGATTCGTTTGGCTGCTGGTGGTGCGTTGGGAGGAGAGAATGAG
GAATGGATGGAGGAAGCAATGGCAGCGAGGCTGAACAGCTTAGGCTGGGA
AAAGGTTGCTGTGACGTTTCGAGCGCCGTCATTTTGGTCAGCGCATAATA
TTATTTGTGCGTTGAGTAGGAGTAGGGTGGGGACATACTTGTTTAAGAAG
GGACGGAGTGTGATGGATCATGCGGCGGGGAGGATTGCGAGGGCAGCAGC
TGAAGAGGACAGGAGCTAGATGGTCCATTTCTCATTGTCTTCCTTGCTGC
TATCCCTGCGCTTTTCCACATCACTGCTCATCTGCTCCTTCGTCATCACC
ATGCCCCCCTCCGAAGGCTTTGCCGCCGCGCCTAGCCCCCCTCCTACCGC
TGCTGGCCACAGTGCCACCATTGGAACGCCTACGCACCTGGCTGTGGTCG
TGCACGGATTGGTAGGACGCCCCGACGACTTAAGCTATCTCCGCGAGTCC
ATCGAAAAACAGGGACACGGTATTCTCGCACATTGTGCTGCATGCAACCT
GGACAAGACTTTTGACGGGGTTCAAGCAGGTGGGGAACGCCTGGCAGCCG
AGGTCCGACAAATCGTCGCTGCCAATCCTTCTTTGCATACCATTTCGTTC
ATTGGTAACAGCTTAGGAGGAATTTATTCTCGATATGCCATCTCGCTGCT
GTGGCAACCAGAGAGCAAAACCATCCTCGGCCTCACACCGATCACCTTCA
TGTCAATCGCCACGCCCCACCTTGGTGTACGGCGCTTCACGGTCATCCCT
CTTCCCGACGTATTACATTTCACCCCACCGTTAGTCATCGGCCAGACGGG
ACACGACCTCTTCCTCCGTCCTCCTCCCCCAAGAAGAAGCAGCAGTAGTA
GCAGCGCCAGCACCAGCGAAAGCGACCCTCCTCTCCTACTCAAGATGGCG
TCAGAGAAACGTTTTTTGGAACCCTTGGCGGCATTTAAATATCGGAGGGC
ATACGGAAACTTGAAGGATGACATGCTCGTCCCGTTCGGCACGGCCTTGT
TTCACCCTGAAGGAAGAAGGGGCTCTTGGGCGGTTGTGGGTGAGGAGGAG
AGAGATAGAATGGGTAGACTTGCGTCGATTCGTTTGGCTGCTGGTGGTGC
GTTGGGAGGAGAGAATGAGGAATGGATGGAGGAAGCAATGGCAGCGAGGC
TGAACAGCTTAGGCTGGGAAAAGGTTGCTGTGACGTTTCGAGCGCCGTCA
TTTTGGTCAGCGCATAATATTATTTGTGCGTTGAGTAGGAGTAGGGTGGG
GACATACTTGTTTAAGAAGGGACGGAGTGTGATGGATCATGCGGCGGGGA
GGATTGCGAGGGCAGCAGCTGAAGAGGACAGGAGCTAG

Synonyms

Publications