jgi.p|Nanoce1779_2|653040, mRNA_857 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|653040
Unique NamemRNA_857
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1202
Alignment locationscaffold_2:594876..596470 -

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Properties
Property NameValue
TranscriptId653126
TrackFilteredModels2
ProteinId653040
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:594876..596470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653040gene_857Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653040mRNA_857-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_857CDS_857Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_857 ID=mRNA_857|Name=jgi.p|Nanoce1779_2|653040|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp
ATGCCACCATATGCCCTAAAGGATTTAAGTCCCATCAGTCCCTTAACACG
CTTCGATGCCAAAGGTCAACTACCCCAAAGTGACGCCGCGGCGCGGGCCG
TGGCACGGGGAGGCCCCCTCGTTGCCCTCTCGCTCAAGGAAGCCGTTTTG
CTTGTTGCACCAAGCGAACGCCGGCCCCGCTCCCTCATCGAAAACCGGGG
CCTCCCCAAAATGTGGCGTCTCACGGACGGCATCTGCCTAAGCCACGTCG
GCCTCATCCAAGACAGCCGCGCCCTCCTTCTTGCCGCGCAACAGGCCGCA
TTTGAGCATGAGAATCGGTTCGGGGAACACATCCCGATAGCGGAGCTGGT
GGAAGTGGTGGCTGGGAAGCAGCAAGAGGCGACGATGCAAGGGAGTAGGC
GGCCCTATGGCTCCAGCATCCTTATCGCAGGCTTGCTCCCTGACCTGCGA
GGCCCTGCTTCCATCCCAACCAGCAGTAGCAGCAGCGACAGTCATAGACG
AAAAGGTGTTTTATACCCGCGTATTTATAGGACGGACCCCTCGGGGACCT
TCACATTGTGGAGGGCATGTGCCTTGGGCCGGGGGACGGAGACCATCATG
GCATTGTTGGAGGACAAGTATGCGCCAGAGATGGAGCGGAAGGAAGCGTT
GAAATTGGCCTTGGAATGCTGCAGGGTTTTGATGAGTGGTGGAAGGGAGA
AGAGGGAGGAGAAGGAAGAGGTGGGGAGGGAAGGGGGGGAGAAGAAGAAG
AAGAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTGGAAATCAAGAAAAGGACATCTTTGA
TGACGGAGGCGGGCCCTGAGGAAGCGGAGGAGGACCTAATGGTGGCAGGA
GTAGACGTAGCATTGATCTCGAGGGAGGGTGTGAGGATGTGGGAGAGTGT
GTCACCTGTGGAGAAGCTTCTGGACCTGGTTGAGGACAACTGGGTGTGAA
GACGAAGGAAGAAGACAAAGAACAAGTCGACATGGCGGTCGTAGGTAGTA
AACAGTGATTGATGGTGAAGGTTATCAGGGGGGGAGGGGGGGGTTGAGGG
TTTGACCACATCTACTTGTCCTCCATGATGGCAGAGGACCGCGTGCGGGA
TTTAGCGCTGGCGGGGTAGCGCTGGATAGATCAATCGATGCGGGAGTGAC
GG
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protein sequence of jgi.p|Nanoce1779_2|653040

>mRNA_857-protein ID=mRNA_857-protein|Name=jgi.p|Nanoce1779_2|653040|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MPPYALKDLSPISPLTRFDAKGQLPQSDAAARAVARGGPLVALSLKEAVL
LVAPSERRPRSLIENRGLPKMWRLTDGICLSHVGLIQDSRALLLAAQQAA
FEHENRFGEHIPIAELVEVVAGKQQEATMQGSRRPYGSSILIAGLLPDLR
GPASIPTSSSSSDSHRRKGVLYPRIYRTDPSGTFTLWRACALGRGTETIM
ALLEDKYAPEMERKEALKLALECCRVLMSGGREKREEKEEVGREGGEKKK
KKKEEEEEEEEEEEEEEEEEEEEEVEIKKRTSLMTEAGPEEAEEDLMVAG
VDVALISREGVRMWESVSPVEKLLDLVEDNWV*
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mRNA from alignment at scaffold_2:594876..596470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_857 ID=mRNA_857|Name=jgi.p|Nanoce1779_2|653040|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at scaffold_2:594876..596470- (Nannochloropsis oceanica)
ATGCCACCATATGCCCTAAAGGGTGCAAGAAAGGGATGCGTGTCCAAGGC
CCCCAGCGATGTCAGGCTCCTTTTTCAGCCTCCTACCCCCTGCCTCCTCC
TCCTTTCCTTGGTTCATGTCCTCCTACTACTACCTGGCACTATTGCTGAA
GATTTAAGTCCCATCAGTCCCTTAACACGCTTCGATGCCAAAGGTCAACT
ACCCCAAAGTGACGCCGCGGCGCGGGCCGTGGCACGGGGAGGCCCCCTCG
TTGCCCTCTCGCTCAAGGAAGCCGTTTTGCTTGTTGCACCAAGGTAAGGG
GAATTTGAGGGAGTATAAGAGCAGAGGGGGGTTGGTATAATCTTGATAAG
TTGAATGTGAACATGAAACCTGAGTTGCGGGCCATGGGGAGGGACAAGGC
TAAATAATGAGAGTGGACGGACTGGAGATGCTGGTCCTCCCCGCGGCATA
GTCACCGCCTTTCTCCTACTCACTCCTGTCATCCGCCCCACCAAATTATA
AACCACACACGCTTCATCAACAAACTCACAAGTATCCCCTTTTTGACCCT
TTTTAAGCGAACGCCGGCCCCGCTCCCTCATCGAAAACCGGGGCCTCCCC
AAAATGTGGCGTCTCACGGACGGCATCTGCCTAAGCCACGTCGGCCTCAT
CCAAGACAGCCGCGCCCTCCTTCTTGCCGCGCAACAGGCCGCATTTGAGC
ATGAGAATCGGTTCGGGGAACACATCCCGATAGCGGAGCTGGTGGAAGTG
GTGGCTGGGAAGCAGCAAGAGGCGACGATGCAAGGGAGTAGGCGGCCCTA
TGGCTCCAGCATCCTTATCGCAGGCTTGCTCCCTGACCTGCGAGGCCCTG
CTTCCATCCCAACCAGCAGTAGCAGCAGCGACAGTCATAGACGAAAAGGT
GTTTTATACCCGCGTATTTATAGGACGGACCCCTCGGGGACCTTCACATT
GTGGAGGGCATGTGCCTTGGGCCGGGGGACGGAGACCATCATGGCATTGT
TGGAGGACAAGTATGCGCCAGAGATGGAGCGGAAGGAAGCGTTGAAATTG
GCCTTGGAATGCTGCAGGGTTTTGATGAGTGGTGGAAGGGAGAAGAGGGA
GGAGAAGGAAGAGGTGGGGAGGGAAGGGGGGGAGAAGAAGAAGAAGAAAA
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGTGGAAATCAAGAAAAGGACATCTTTGATGACGGA
GGCGGGCCCTGAGGAAGCGGAGGAGGACCTAATGGTGGCAGGAGTAGACG
TAGCATTGATCTCGAGGGAGGGTGTGAGGATGTGGGAGAGTGTGTCACCT
GTGGAGAAGCTTCTGGACCTGGTTGAGGACAACTGGGTGTGAAGACGAAG
GAAGAAGACAAAGAACAAGTCGACATGGCGGTCGTAGGTAGTAAACAGTG
ATTGATGGTGAAGGTTATCAGGGGGGGAGGGGGGGGTTGAGGGTTTGACC
ACATCTACTTGTCCTCCATGATGGCAGAGGACCGCGTGCGGGATTTAGCG
CTGGCGGGGTAGCGCTGGATAGATCAATCGATGCGGGAGTGACGG
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Coding sequence (CDS) from alignment at scaffold_2:594876..596470-

>mRNA_857 ID=mRNA_857|Name=jgi.p|Nanoce1779_2|653040|organism=Nannochloropsis oceanica|type=CDS|length=2997bp|location=Sequence derived from alignment at scaffold_2:594876..596470- (Nannochloropsis oceanica)
CGAACGCCGGCCCCGCTCCCTCATCGAAAACCGGGGCCTCCCCAAAATGT
GGCGTCTCACGGACGGCATCTGCCTAAGCCACGTCGGCCTCATCCAAGAC
AGCCGCGCCCTCCTTCTTGCCGCGCAACAGGCCGCATTTGAGCATGAGAA
TCGGTTCGGGGAACACATCCCGATAGCGGAGCTGGTGGAAGTGGTGGCTG
GGAAGCAGCAAGAGGCGACGATGCAAGGGAGTAGGCGGCCCTATGGCTCC
AGCATCCTTATCGCAGGCTTGCTCCCTGACCTGCGAGGCCCTGCTTCCAT
CCCAACCAGCAGTAGCAGCAGCGACAGTCATAGACGAAAAGGTGTTTTAT
ACCCGCGTATTTATAGGACGGACCCCTCGGGGACCTTCACATTGTGGAGG
GCATGTGCCTTGGGCCGGGGGACGGAGACCATCATGGCATTGTTGGAGGA
CAAGTATGCGCCAGAGATGGAGCGGAAGGAAGCGTTGAAATTGGCCTTGG
AATGCTGCAGGGTTTTGATGAGTGGTGGAAGGGAGAAGAGGGAGGAGAAG
GAAGAGGTGGGGAGGGAAGGGGGGGAGAAGAAGAAGAAGAAAAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGTGGAAATCAAGAAAAGGACATCTTTGATGACGGAGGCGGGC
CCTGAGGAAGCGGAGGAGGACCTAATGGTGGCAGGAGTAGACGTAGCATT
GATCTCGAGGGAGGGTGTGAGGATGTGGGAGAGTGTGTCACCTGTGGAGA
AGCTTCTGGACCTGGTTGAGGACAACTGGGTGTGAATTTAAGTCCCATCA
GTCCCTTAACACGCTTCGATGCCAAAGGTCAACTACCCCAAAGTGACGCC
GCGGCGCGGGCCGTGGCACGGGGAGGCCCCCTCGTTGCCCTCTCGCTCAA
GGAAGCCGTTTTGCTTGTTGCACCAAGATGCCACCATATGCCCTAAAGGC
GAACGCCGGCCCCGCTCCCTCATCGAAAACCGGGGCCTCCCCAAAATGTG
GCGTCTCACGGACGGCATCTGCCTAAGCCACGTCGGCCTCATCCAAGACA
GCCGCGCCCTCCTTCTTGCCGCGCAACAGGCCGCATTTGAGCATGAGAAT
CGGTTCGGGGAACACATCCCGATAGCGGAGCTGGTGGAAGTGGTGGCTGG
GAAGCAGCAAGAGGCGACGATGCAAGGGAGTAGGCGGCCCTATGGCTCCA
GCATCCTTATCGCAGGCTTGCTCCCTGACCTGCGAGGCCCTGCTTCCATC
CCAACCAGCAGTAGCAGCAGCGACAGTCATAGACGAAAAGGTGTTTTATA
CCCGCGTATTTATAGGACGGACCCCTCGGGGACCTTCACATTGTGGAGGG
CATGTGCCTTGGGCCGGGGGACGGAGACCATCATGGCATTGTTGGAGGAC
AAGTATGCGCCAGAGATGGAGCGGAAGGAAGCGTTGAAATTGGCCTTGGA
ATGCTGCAGGGTTTTGATGAGTGGTGGAAGGGAGAAGAGGGAGGAGAAGG
AAGAGGTGGGGAGGGAAGGGGGGGAGAAGAAGAAGAAGAAAAAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGTGGAAATCAAGAAAAGGACATCTTTGATGACGGAGGCGGGCC
CTGAGGAAGCGGAGGAGGACCTAATGGTGGCAGGAGTAGACGTAGCATTG
ATCTCGAGGGAGGGTGTGAGGATGTGGGAGAGTGTGTCACCTGTGGAGAA
GCTTCTGGACCTGGTTGAGGACAACTGGGTGTGAATTTAAGTCCCATCAG
TCCCTTAACACGCTTCGATGCCAAAGGTCAACTACCCCAAAGTGACGCCG
CGGCGCGGGCCGTGGCACGGGGAGGCCCCCTCGTTGCCCTCTCGCTCAAG
GAAGCCGTTTTGCTTGTTGCACCAAGATGCCACCATATGCCCTAAAGGCG
AACGCCGGCCCCGCTCCCTCATCGAAAACCGGGGCCTCCCCAAAATGTGG
CGTCTCACGGACGGCATCTGCCTAAGCCACGTCGGCCTCATCCAAGACAG
CCGCGCCCTCCTTCTTGCCGCGCAACAGGCCGCATTTGAGCATGAGAATC
GGTTCGGGGAACACATCCCGATAGCGGAGCTGGTGGAAGTGGTGGCTGGG
AAGCAGCAAGAGGCGACGATGCAAGGGAGTAGGCGGCCCTATGGCTCCAG
CATCCTTATCGCAGGCTTGCTCCCTGACCTGCGAGGCCCTGCTTCCATCC
CAACCAGCAGTAGCAGCAGCGACAGTCATAGACGAAAAGGTGTTTTATAC
CCGCGTATTTATAGGACGGACCCCTCGGGGACCTTCACATTGTGGAGGGC
ATGTGCCTTGGGCCGGGGGACGGAGACCATCATGGCATTGTTGGAGGACA
AGTATGCGCCAGAGATGGAGCGGAAGGAAGCGTTGAAATTGGCCTTGGAA
TGCTGCAGGGTTTTGATGAGTGGTGGAAGGGAGAAGAGGGAGGAGAAGGA
AGAGGTGGGGAGGGAAGGGGGGGAGAAGAAGAAGAAGAAAAAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGTGGAAATCAAGAAAAGGACATCTTTGATGACGGAGGCGGGCCC
TGAGGAAGCGGAGGAGGACCTAATGGTGGCAGGAGTAGACGTAGCATTGA
TCTCGAGGGAGGGTGTGAGGATGTGGGAGAGTGTGTCACCTGTGGAGAAG
CTTCTGGACCTGGTTGAGGACAACTGGGTGTGAATTTAAGTCCCATCAGT
CCCTTAACACGCTTCGATGCCAAAGGTCAACTACCCCAAAGTGACGCCGC
GGCGCGGGCCGTGGCACGGGGAGGCCCCCTCGTTGCCCTCTCGCTCAAGG
AAGCCGTTTTGCTTGTTGCACCAAGATGCCACCATATGCCCTAAAGG
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Synonyms
Publications