jgi.p|Nanoce1779_2|656395, mRNA_8566 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|656395
Unique NamemRNA_8566
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1001
Alignment locationscaffold_26:218015..219276 -

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Properties
Property NameValue
TranscriptId656481
TrackFilteredModels2
ProteinId656395
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:218015..219276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|656395gene_8566Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|656395mRNA_8566-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8566CDS_8566Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8566 ID=mRNA_8566|Name=jgi.p|Nanoce1779_2|656395|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp
ATGGGTAACATGTGGGCGAAAAAGCCTCTCAAGGAAATAATGCGTGAGAA
CAAGCGCATGATCACGCGGGCCATCCGCGAGCTGGACCGGGAACGAGTGA
ACCTGGAAAGGAACGAGAAGAAGTTGATTATGGATATTAAAAAATATGCC
AAAGAAAACCAGATGGGTGCTGTAAAGACCATGGCCAAGGATTTGGTTCG
CACGCGAAACTACCAGACCAAGTTCATCGAAATGCGTTCCCACCTCCAAG
GCGCCGCGCTTAAGCTCGAGACTGTCCGTTCACACGAAGCCATGGCCACG
GCCATGCGGAGCGTTACATCTGCGATGGTCAGTATGAATAAACAAGTGAA
TGTCCCGGCCTTGACAAAGATAATGACGGACTTTGCGCGCGAAAACGAGA
AAAGCGAGCTTATGGGAGATATGCTTGGAGATGCCATGGACGACGCTATG
ACGGAGGAAGGGGACGAGGAAGAGCAGGAAAGGATTGTTGGGGCGGTGTT
GACAGAATTGGGCTTGGACATGACAGATGCCGTCCCCGAGGCTCCAGGGG
CTGTTCCTGCCTCTGCGGCAGCGGCTGCCAAAAGAGATGCAGGCACTGGG
AGGAGGAAGTGGAGGGGGGCCAGGGGGGGGGGGGGAGGGGGAGGGGCGGT
GGACCCGGCGATGAGCGATTTGGAAGCACGGCTGAATAACTTGAGGCGGG
AAGGGTAACGAGGGGAGGGAAGCAGGGAGGGGGGACGGGATGTGTCTTCT
GGGTATATGTGTATACATGAAGAAGCCACGATATTGGTAAATTTGACACG
AAACTGGTAACGGAGCGAAGGAAAGATTTTTAAAAAATTGACATTTGAAA
TAACGACTACCACTTGGGTGCTCAATATAAATTGTTCCGTTAAAATGGCG
GAGAAACGAATGAGGGGGCTACGTTATATATTGCTTGCGGTCTGACCCCT
TGGGATGACGATGAAAAAATGCAAGAGGGTGTAACTGTTCTTTTTACAAA
G
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protein sequence of jgi.p|Nanoce1779_2|656395

>mRNA_8566-protein ID=mRNA_8566-protein|Name=jgi.p|Nanoce1779_2|656395|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MGNMWAKKPLKEIMRENKRMITRAIRELDRERVNLERNEKKLIMDIKKYA
KENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMAT
AMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELMGDMLGDAMDDAM
TEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPASAAAAAKRDAGTG
RRKWRGARGGGGGGGAVDPAMSDLEARLNNLRREG*
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mRNA from alignment at scaffold_26:218015..219276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8566 ID=mRNA_8566|Name=jgi.p|Nanoce1779_2|656395|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp|location=Sequence derived from alignment at scaffold_26:218015..219276- (Nannochloropsis oceanica)
ATGGGTAACATGTGGGCGAAAAAGCCTCTCAAGGAAATAATGCGTGAGAA
CAAGCGCATGATCACGCGGGCCATCCGCGAGCTGGACCGGGAACGAGTGA
ACCTGGAAAGGAACGAGAAGAAGTTGATTATGGATATTAAAAAATATGCC
AAAGAAAACCAGATGGGTGCTGTAAAGACCATGGCCAAGGATTTGGTTCG
CACGCGGTAGGTGGATGTGTGTTGTGGTGTGATGGGACGGGTGGTGGGGC
GAAAGGAGGGTTCTGTGGAAGAAAGTTTTTTGTAATTTTAATTATTTACC
CCTTCATCGTTGGACACTTGTGTACGGCAAAGGGATTGAATGTAAGCTTT
AGATTTATTTCTTATGTTGAAAAATCTATTTCCGCCTTCACATCGCTTCC
GTCAAAGCTCATCATGTCTCCCTCCCGCCCTCCCGCCCTTCCCCCCCCCT
TAGAAACTACCAGACCAAGTTCATCGAAATGCGTTCCCACCTCCAAGGCG
CCGCGCTTAAGCTCGAGACTGTCCGTTCACACGAAGCCATGGCCACGGCC
ATGCGGAGCGTTACATCTGCGATGGTCAGTATGAATAAACAAGTGAATGT
CCCGGCCTTGACAAAGATAATGACGGACTTTGCGCGCGAAAACGAGAAAA
GCGAGCTTATGGGAGATATGCTTGGAGATGCCATGGACGACGCTATGACG
GAGGAAGGGGACGAGGAAGAGCAGGAAAGGATTGTTGGGGCGGTGTTGAC
AGAATTGGGCTTGGACATGACAGATGCCGTCCCCGAGGCTCCAGGGGCTG
TTCCTGCCTCTGCGGCAGCGGCTGCCAAAGTTAACCCGCAAAGAGAGATG
CAGGCACTGGGAGGAGGAAGTGGAGGGGGGCCAGGGGGGGGGGGGGAGGG
GGAGGGGCGGTGGACCCGGCGATGAGCGATTTGGAAGCACGGCTGAATAA
CTTGAGGCGGGAAGGGTAACGAGGGGAGGGAAGCAGGGAGGGGGGACGGG
ATGTGTCTTCTGGGTATATGTGTATACATGAAGAAGCCACGATATTGGTA
AATTTGACACGAAACTGGTAACGGAGCGAAGGAAAGATTTTTAAAAAATT
GACATTTGAAATAACGACTACCACTTGGGTGCTCAATATAAATTGTTCCG
TTAAAATGGCGGAGAAACGAATGAGGGGGCTACGTTATATATTGCTTGCG
GTCTGACCCCTTGGGATGACGATGAAAAAATGCAAGAGGGTGTAACTGTT
CTTTTTACAAAG
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Coding sequence (CDS) from alignment at scaffold_26:218015..219276-

>mRNA_8566 ID=mRNA_8566|Name=jgi.p|Nanoce1779_2|656395|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_26:218015..219276- (Nannochloropsis oceanica)
AGAGATGCAGGCACTGGGAGGAGGAAGTGGAGGGGGGCCAGGGGGGGGGG
GGGAGGGGGAGGGGCGGTGGACCCGGCGATGAGCGATTTGGAAGCACGGC
TGAATAACTTGAGGCGGGAAGGGTAAAAACTACCAGACCAAGTTCATCGA
AATGCGTTCCCACCTCCAAGGCGCCGCGCTTAAGCTCGAGACTGTCCGTT
CACACGAAGCCATGGCCACGGCCATGCGGAGCGTTACATCTGCGATGGTC
AGTATGAATAAACAAGTGAATGTCCCGGCCTTGACAAAGATAATGACGGA
CTTTGCGCGCGAAAACGAGAAAAGCGAGCTTATGGGAGATATGCTTGGAG
ATGCCATGGACGACGCTATGACGGAGGAAGGGGACGAGGAAGAGCAGGAA
AGGATTGTTGGGGCGGTGTTGACAGAATTGGGCTTGGACATGACAGATGC
CGTCCCCGAGGCTCCAGGGGCTGTTCCTGCCTCTGCGGCAGCGGCTGCCA
AAATGGGTAACATGTGGGCGAAAAAGCCTCTCAAGGAAATAATGCGTGAG
AACAAGCGCATGATCACGCGGGCCATCCGCGAGCTGGACCGGGAACGAGT
GAACCTGGAAAGGAACGAGAAGAAGTTGATTATGGATATTAAAAAATATG
CCAAAGAAAACCAGATGGGTGCTGTAAAGACCATGGCCAAGGATTTGGTT
CGCACGCGAGAGATGCAGGCACTGGGAGGAGGAAGTGGAGGGGGGCCAGG
GGGGGGGGGGGAGGGGGAGGGGCGGTGGACCCGGCGATGAGCGATTTGGA
AGCACGGCTGAATAACTTGAGGCGGGAAGGGTAAAAACTACCAGACCAAG
TTCATCGAAATGCGTTCCCACCTCCAAGGCGCCGCGCTTAAGCTCGAGAC
TGTCCGTTCACACGAAGCCATGGCCACGGCCATGCGGAGCGTTACATCTG
CGATGGTCAGTATGAATAAACAAGTGAATGTCCCGGCCTTGACAAAGATA
ATGACGGACTTTGCGCGCGAAAACGAGAAAAGCGAGCTTATGGGAGATAT
GCTTGGAGATGCCATGGACGACGCTATGACGGAGGAAGGGGACGAGGAAG
AGCAGGAAAGGATTGTTGGGGCGGTGTTGACAGAATTGGGCTTGGACATG
ACAGATGCCGTCCCCGAGGCTCCAGGGGCTGTTCCTGCCTCTGCGGCAGC
GGCTGCCAAAATGGGTAACATGTGGGCGAAAAAGCCTCTCAAGGAAATAA
TGCGTGAGAACAAGCGCATGATCACGCGGGCCATCCGCGAGCTGGACCGG
GAACGAGTGAACCTGGAAAGGAACGAGAAGAAGTTGATTATGGATATTAA
AAAATATGCCAAAGAAAACCAGATGGGTGCTGTAAAGACCATGGCCAAGG
ATTTGGTTCGCACGCGAGAGATGCAGGCACTGGGAGGAGGAAGTGGAGGG
GGGCCAGGGGGGGGGGGGGAGGGGGAGGGGCGGTGGACCCGGCGATGAGC
GATTTGGAAGCACGGCTGAATAACTTGAGGCGGGAAGGGTAAAAACTACC
AGACCAAGTTCATCGAAATGCGTTCCCACCTCCAAGGCGCCGCGCTTAAG
CTCGAGACTGTCCGTTCACACGAAGCCATGGCCACGGCCATGCGGAGCGT
TACATCTGCGATGGTCAGTATGAATAAACAAGTGAATGTCCCGGCCTTGA
CAAAGATAATGACGGACTTTGCGCGCGAAAACGAGAAAAGCGAGCTTATG
GGAGATATGCTTGGAGATGCCATGGACGACGCTATGACGGAGGAAGGGGA
CGAGGAAGAGCAGGAAAGGATTGTTGGGGCGGTGTTGACAGAATTGGGCT
TGGACATGACAGATGCCGTCCCCGAGGCTCCAGGGGCTGTTCCTGCCTCT
GCGGCAGCGGCTGCCAAAATGGGTAACATGTGGGCGAAAAAGCCTCTCAA
GGAAATAATGCGTGAGAACAAGCGCATGATCACGCGGGCCATCCGCGAGC
TGGACCGGGAACGAGTGAACCTGGAAAGGAACGAGAAGAAGTTGATTATG
GATATTAAAAAATATGCCAAAGAAAACCAGATGGGTGCTGTAAAGACCAT
GGCCAAGGATTTGGTTCGCACGCG
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Synonyms
Publications