jgi.p|Nanoce1779_2|603129, mRNA_8565 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603129
Unique NamemRNA_8565
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length354
Alignment locationscaffold_26:217128..217481 +

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Properties
Property NameValue
TranscriptId603215
TrackFilteredModels2
ProteinId603129
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:217128..217481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603129gene_8565Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603129mRNA_8565-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8565CDS_8565Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8565 ID=mRNA_8565|Name=jgi.p|Nanoce1779_2|603129|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGGCCAAGACACCCTCCAAAAAGTCCGCCAAGGCCCCGAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTATGGCTCCTACATCT
ACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGC
GTGTCCATCTTGAACTCCTTCATCGGTGACATCTTCGACCGCCTCGCCAC
AGAGGCCGGCAAGCTGGCCCGCTACACCAAGAAGTCTACCCTCTCTTCCC
GCGAGGTGCAGACGGCAGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAG
CACGCTGTCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCGTCCAG
CTAA
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protein sequence of jgi.p|Nanoce1779_2|603129

>mRNA_8565-protein ID=mRNA_8565-protein|Name=jgi.p|Nanoce1779_2|603129|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRG
VSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAK
HAVSEGTKAVTKYTSSS*
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mRNA from alignment at scaffold_26:217128..217481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8565 ID=mRNA_8565|Name=jgi.p|Nanoce1779_2|603129|organism=Nannochloropsis oceanica|type=mRNA|length=354bp|location=Sequence derived from alignment at scaffold_26:217128..217481+ (Nannochloropsis oceanica)
ATGGCCAAGACACCCTCCAAAAAGTCCGCCAAGGCCCCGAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTATGGCTCCTACATCT
ACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGC
GTGTCCATCTTGAACTCCTTCATCGGTGACATCTTCGACCGCCTCGCCAC
AGAGGCCGGCAAGCTGGCCCGCTACACCAAGAAGTCTACCCTCTCTTCCC
GCGAGGTGCAGACGGCAGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAG
CACGCTGTCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCGTCCAG
CTAA
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Coding sequence (CDS) from alignment at scaffold_26:217128..217481+

>mRNA_8565 ID=mRNA_8565|Name=jgi.p|Nanoce1779_2|603129|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_26:217128..217481+ (Nannochloropsis oceanica)
ATGGCCAAGACACCCTCCAAAAAGTCCGCCAAGGCCCCGAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTATGGCTCCTACATCT
ACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGC
GTGTCCATCTTGAACTCCTTCATCGGTGACATCTTCGACCGCCTCGCCAC
AGAGGCCGGCAAGCTGGCCCGCTACACCAAGAAGTCTACCCTCTCTTCCC
GCGAGGTGCAGACGGCAGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAG
CACGCTGTCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCGTCCAG
CTAA
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Synonyms
Publications