jgi.p|Nanoce1779_2|603120, mRNA_8562 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603120
Unique NamemRNA_8562
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1504
Alignment locationscaffold_26:208003..209506 +

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Properties
Property NameValue
TranscriptId603206
TrackFilteredModels2
ProteinId603120
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:208003..209506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603120gene_8562Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603120mRNA_8562-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8562CDS_8562Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8562 ID=mRNA_8562|Name=jgi.p|Nanoce1779_2|603120|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp
AGAGTCATGGTGGCCAGGGACAAGAACACTAAGACGATGCCCCTCTTGAG
CAAGCAACCCAGCAACTTAGGATGCGGCAGCAGCAAGGAAGACGTCGTGG
AAGACCTCACCCTGCAACCCGACGAGGAGGCCCGCCAAGCCCTGTGCGCC
GCCTTGTACAAGTGCACGGGGCCCTTCAAGCGCATGGTCTCACCTTTATT
GCCTTACCCTTTGGTTCTCAATAAGCTGCACCGCGACTTCGTCGAAGCCG
AGGAAATGAGTGGGGGCTCGGCGGAGGAATGCATGCTCACTTTTGCCATG
AAAATGGAAGAACCCGATACCAAGACATTCCTCGAAGATGCCGAAAAACG
CATCAGGGCTGAGCCTAAGGTGTACGGGGAGCACTTGCTGGAGGAGGAGT
GGATCAATGATTTCCAAGCACAGGTTGACTATGTCCCTGGGCTCAGTAAG
GGCAAGCGCTTAATAGACGTTGAAGACGCGCAGCAATATGCGGCTTTTGC
CATGGATATGAAGGGGGCAGGGAACAAGTGTTTTGCCACAAAGGATTTTG
AGATGGCCTTGACGAGGTACCAGCAGGGAGTGGAGTTGCTGCACAACGTC
GAATGTAAAGAGGCTTCGGCCCAACAGGAGCTAACAGCCCTCCTTGCCTC
CCTCCTAACCAACCAAGCTATCGCGGGCTTACGAACCGGAAACTGGCGTG
TGACAATTACGGCATGCGATGCCTGCTTAGATATTAACCCTCAGAATCTC
AAGGCGCGTGCCCGACGAGCCGAGGCCTACAAATGCTTGGGAGACATCGA
AAAAGCCACCACGGACCTCGATTGGATTGTCCGCCTACAATGCTCTGATC
TCCTCGCCGACCACGACGTCGATACCGCCCAAACACTTTTAAGCACCGCT
CAAAAAGACGCCCAAAAAATGATGAAAGACCTCCAAGGGATGCGCATTCA
AGAAAGCGAGGTCGCCAAGCGCATGATCTCAGGTGCGGACTTCACTGCTA
ATCGCGAAAACGAAAAGCCTTCCTTCCTCCATCCCTCCTCTTCTTCCTCC
ACCTCCTCCGGCAGCCCCTCGCGAATGCATGCCCAGAATCAGTTTTCATC
AGCTTTAGCCGAAGCAAAGAAGAGCACGAAGATCATCACCGAGAAACTGA
TTGATGAAGTGGTGGCGTTGGAGATCCAAAGGACTTTGGTCGACATATAC
GCGCAACCCAACGTCCACTCGGAGTTGATGGCCATGAGGAGGGCATCTGA
ATTCGAAAGCGGGCGATTCGTGCTGCGCTTGAGGCCGTATCTGGTGAGAC
TGCTCGAGAAGCCCGTGTTGGAAAAATATGGCTTTGGGGGGGGGGAAGGG
GGGTATCGGAAATTGGAGCGGGCGTTGGGGCAGCATGTGACGACAAGCGA
GGACGTGAGGGAGAACGCCAAGAGAATTTTGGCCACCCTGATGGGGGATT
TGTTCGAGGAATAGGGCGGTGGGTTCTTCTTTCCCTCACTCCCTCCCTCC
CTCC
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protein sequence of jgi.p|Nanoce1779_2|603120

>mRNA_8562-protein ID=mRNA_8562-protein|Name=jgi.p|Nanoce1779_2|603120|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MVARDKNTKTMPLLSKQPSNLGCGSSKEDVVEDLTLQPDEEARQALCAAL
YKCTGPFKRMVSPLLPYPLVLNKLHRDFVEAEEMSGGSAEECMLTFAMKM
EEPDTKTFLEDAEKRIRAEPKVYGEHLLEEEWINDFQAQVDYVPGLSKGK
RLIDVEDAQQYAAFAMDMKGAGNKCFATKDFEMALTRYQQGVELLHNVEC
KEASAQQELTALLASLLTNQAIAGLRTGNWRVTITACDACLDINPQNLKA
RARRAEAYKCLGDIEKATTDLDWIVRLQCSDLLADHDVDTAQTLLSTAQK
DAQKMMKDLQGMRIQESEVAKRMISGADFTANRENEKPSFLHPSSSSSTS
SGSPSRMHAQNQFSSALAEAKKSTKIITEKLIDEVVALEIQRTLVDIYAQ
PNVHSELMAMRRASEFESGRFVLRLRPYLVRLLEKPVLEKYGFGGGEGGY
RKLERALGQHVTTSEDVRENAKRILATLMGDLFEE*
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mRNA from alignment at scaffold_26:208003..209506+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8562 ID=mRNA_8562|Name=jgi.p|Nanoce1779_2|603120|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp|location=Sequence derived from alignment at scaffold_26:208003..209506+ (Nannochloropsis oceanica)
AGAGTCATGGTGGCCAGGGACAAGAACACTAAGACGATGCCCCTCTTGAG
CAAGCAACCCAGCAACTTAGGATGCGGCAGCAGCAAGGAAGACGTCGTGG
AAGACCTCACCCTGCAACCCGACGAGGAGGCCCGCCAAGCCCTGTGCGCC
GCCTTGTACAAGTGCACGGGGCCCTTCAAGCGCATGGTCTCACCTTTATT
GCCTTACCCTTTGGTTCTCAATAAGCTGCACCGCGACTTCGTCGAAGCCG
AGGAAATGAGTGGGGGCTCGGCGGAGGAATGCATGCTCACTTTTGCCATG
AAAATGGAAGAACCCGATACCAAGACATTCCTCGAAGATGCCGAAAAACG
CATCAGGGCTGAGCCTAAGGTGTACGGGGAGCACTTGCTGGAGGAGGAGT
GGATCAATGATTTCCAAGCACAGGTTGACTATGTCCCTGGGCTCAGTAAG
GGCAAGCGCTTAATAGACGTTGAAGACGCGCAGCAATATGCGGCTTTTGC
CATGGATATGAAGGGGGCAGGGAACAAGTGTTTTGCCACAAAGGATTTTG
AGATGGCCTTGACGAGGTACCAGCAGGGAGTGGAGTTGCTGCACAACGTC
GAATGTAAAGAGGCTTCGGCCCAACAGGAGCTAACAGCCCTCCTTGCCTC
CCTCCTAACCAACCAAGCTATCGCGGGCTTACGAACCGGAAACTGGCGTG
TGACAATTACGGCATGCGATGCCTGCTTAGATATTAACCCTCAGAATCTC
AAGGCGCGTGCCCGACGAGCCGAGGCCTACAAATGCTTGGGAGACATCGA
AAAAGCCACCACGGACCTCGATTGGATTGTCCGCCTACAATGCTCTGATC
TCCTCGCCGACCACGACGTCGATACCGCCCAAACACTTTTAAGCACCGCT
CAAAAAGACGCCCAAAAAATGATGAAAGACCTCCAAGGGATGCGCATTCA
AGAAAGCGAGGTCGCCAAGCGCATGATCTCAGGTGCGGACTTCACTGCTA
ATCGCGAAAACGAAAAGCCTTCCTTCCTCCATCCCTCCTCTTCTTCCTCC
ACCTCCTCCGGCAGCCCCTCGCGAATGCATGCCCAGAATCAGTTTTCATC
AGCTTTAGCCGAAGCAAAGAAGAGCACGAAGATCATCACCGAGAAACTGA
TTGATGAAGTGGTGGCGTTGGAGATCCAAAGGACTTTGGTCGACATATAC
GCGCAACCCAACGTCCACTCGGAGTTGATGGCCATGAGGAGGGCATCTGA
ATTCGAAAGCGGGCGATTCGTGCTGCGCTTGAGGCCGTATCTGGTGAGAC
TGCTCGAGAAGCCCGTGTTGGAAAAATATGGCTTTGGGGGGGGGGAAGGG
GGGTATCGGAAATTGGAGCGGGCGTTGGGGCAGCATGTGACGACAAGCGA
GGACGTGAGGGAGAACGCCAAGAGAATTTTGGCCACCCTGATGGGGGATT
TGTTCGAGGAATAGGGCGGTGGGTTCTTCTTTCCCTCACTCCCTCCCTCC
CTCC
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Coding sequence (CDS) from alignment at scaffold_26:208003..209506+

>mRNA_8562 ID=mRNA_8562|Name=jgi.p|Nanoce1779_2|603120|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_26:208003..209506+ (Nannochloropsis oceanica)
ATGGTGGCCAGGGACAAGAACACTAAGACGATGCCCCTCTTGAGCAAGCA
ACCCAGCAACTTAGGATGCGGCAGCAGCAAGGAAGACGTCGTGGAAGACC
TCACCCTGCAACCCGACGAGGAGGCCCGCCAAGCCCTGTGCGCCGCCTTG
TACAAGTGCACGGGGCCCTTCAAGCGCATGGTCTCACCTTTATTGCCTTA
CCCTTTGGTTCTCAATAAGCTGCACCGCGACTTCGTCGAAGCCGAGGAAA
TGAGTGGGGGCTCGGCGGAGGAATGCATGCTCACTTTTGCCATGAAAATG
GAAGAACCCGATACCAAGACATTCCTCGAAGATGCCGAAAAACGCATCAG
GGCTGAGCCTAAGGTGTACGGGGAGCACTTGCTGGAGGAGGAGTGGATCA
ATGATTTCCAAGCACAGGTTGACTATGTCCCTGGGCTCAGTAAGGGCAAG
CGCTTAATAGACGTTGAAGACGCGCAGCAATATGCGGCTTTTGCCATGGA
TATGAAGGGGGCAGGGAACAAGTGTTTTGCCACAAAGGATTTTGAGATGG
CCTTGACGAGGTACCAGCAGGGAGTGGAGTTGCTGCACAACGTCGAATGT
AAAGAGGCTTCGGCCCAACAGGAGCTAACAGCCCTCCTTGCCTCCCTCCT
AACCAACCAAGCTATCGCGGGCTTACGAACCGGAAACTGGCGTGTGACAA
TTACGGCATGCGATGCCTGCTTAGATATTAACCCTCAGAATCTCAAGGCG
CGTGCCCGACGAGCCGAGGCCTACAAATGCTTGGGAGACATCGAAAAAGC
CACCACGGACCTCGATTGGATTGTCCGCCTACAATGCTCTGATCTCCTCG
CCGACCACGACGTCGATACCGCCCAAACACTTTTAAGCACCGCTCAAAAA
GACGCCCAAAAAATGATGAAAGACCTCCAAGGGATGCGCATTCAAGAAAG
CGAGGTCGCCAAGCGCATGATCTCAGGTGCGGACTTCACTGCTAATCGCG
AAAACGAAAAGCCTTCCTTCCTCCATCCCTCCTCTTCTTCCTCCACCTCC
TCCGGCAGCCCCTCGCGAATGCATGCCCAGAATCAGTTTTCATCAGCTTT
AGCCGAAGCAAAGAAGAGCACGAAGATCATCACCGAGAAACTGATTGATG
AAGTGGTGGCGTTGGAGATCCAAAGGACTTTGGTCGACATATACGCGCAA
CCCAACGTCCACTCGGAGTTGATGGCCATGAGGAGGGCATCTGAATTCGA
AAGCGGGCGATTCGTGCTGCGCTTGAGGCCGTATCTGGTGAGACTGCTCG
AGAAGCCCGTGTTGGAAAAATATGGCTTTGGGGGGGGGGAAGGGGGGTAT
CGGAAATTGGAGCGGGCGTTGGGGCAGCATGTGACGACAAGCGAGGACGT
GAGGGAGAACGCCAAGAGAATTTTGGCCACCCTGATGGGGGATTTGTTCG
AGGAATAG
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Synonyms
Publications