jgi.p|Nanoce1779_2|603114, mRNA_8561 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603114
Unique Name	mRNA_8561
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1281
Alignment location	scaffold_26:205471..207662 +

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Properties


Property Name	Value
TranscriptId	603200
Track	FilteredModels2
ProteinId	603114

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:205471..207662 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603114	gene_8561	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603114	mRNA_8561-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8561	CDS_8561	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:205471..207662+
coding sequence from alignment at scaffold_26:205471..207662+

mRNA sequence

>mRNA_8561 ID=mRNA_8561|Name=jgi.p|Nanoce1779_2|603114|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
CAGGTGCCTGGAAACCGGAACGGGTGGGAAGGTTTTATGAAGCGAGGCTT
GTGTGGTGGTGGATGGTGGAGGGCTCTGCAGCAGCGAACACTCCCCTCCT
CATCGTCCATGCCAGCCAGGCGACGACGATCACAAGTGTGGCAGAGGATT
GCCGAGACTCACAACCCCTTCCTTGACCTCGATGACGATGCGCAGCCTCC
TATGTGTCTGCGTGTGTCGATGAATGGCTCTCCTGTCTTCACTGCCCAGC
ATCGTGAGAGGGGGGGCCAAAAAGAAGTAAAGAAGAGGGACATCCCACCA
AACCACACTAACCATGCCTTTCTTGCGCCTTCCAACACAGACACGATGGC
CCCCAAGAAAGTCAATAAACGCGCGGGCAAGCCTCGCACGACGATGCTGG
CCCGAGGTGTACCCTCCTTGAGCCACTCGGCGACCGTCAAGAAGGGTGGC
CGGTATAAGTTCTTCGGCAAGGGCGGGAAGAAGGCCGTGACCGCGGCCCC
CGCCACGGGCAAGGCCCCACGTTTCTACCCTGCGGATGACATTCCCGTCC
CTCGCCGTAGCGCCCGCCATGTGCAGAAGCCGACCAAGCTGAAGGCTGGC
ATCGTACCGGGCTCCATTCTTATCATGCTTGCGGGCCGATTCCGTGGCAA
GCGTGTGGTGTTCCTCAAGCAGTTGGCATCGGGCACGCTGCTTGTGACTG
GCCCCTACTCTTTGAATGGCGTGCCTCTGCGACGCGTGAACCAAGCCTAC
GTCATCGTCACCTCCCAAGCGGTCGACATCTCGGCCGTCAAGGTGCCTGC
CACCATGGACGACAATTACTTCGCGCGTCCGGCGGATGCGGAGGAGGGGG
ATATCCTGGCAGCAGGCACGGGAAAGAAAGCCACAGTAGTATCTGAGGGA
AGGAAGAAGGACCAGGAGGCCGTGGACACACAGGTGCTTGCGGCGATCAA
GAAGGTGCCGCAGTTAGACGGCTACGTGAAGGCCCGCTTTTCGTTGAAGA
AGGGGGTGAAGCCCCACGAGATCAAGTTCTGAGTTCCAGAAATGTGATGA
ATATGGAAGGAGGAAGGACGCGCGCTGTTTGATTTCTCTTCTGTTGGCAT
GAAGAGGATGGATGGGGAAGCAACGGGAGGTTTGTACTCTCTTGTCATTC
TTTTCAGGCAGGAGACGCGTAGGGGATGCATCGCGCGGCGTGATTTAGTT
TAGCTAAGCAATTATTTTACAATGCGCCCCCAAAAACAAAACCCCAAAAG
AAAGGAAAACAAAGACAGCTAGAATCAAAAA

protein sequence of jgi.p|Nanoce1779_2|603114

>mRNA_8561-protein ID=mRNA_8561-protein|Name=jgi.p|Nanoce1779_2|603114|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MKRGLCGGGWWRALQQRTLPSSSSMPARRRRSQVWQRIAETHNPFLDLDD
DAQPPMCLRVSMNGSPVFTAQHRERGGQKEVKKRDIPPNHTNHAFLAPSN
TDTMAPKKVNKRAGKPRTTMLARGVPSLSHSATVKKGGRYKFFGKGGKKA
VTAAPATGKAPRFYPADDIPVPRRSARHVQKPTKLKAGIVPGSILIMLAG
RFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQAVDISA
VKVPATMDDNYFARPADAEEGDILAAGTGKKATVVSEGRKKDQEAVDTQV
LAAIKKVPQLDGYVKARFSLKKGVKPHEIKF*

mRNA from alignment at scaffold_26:205471..207662+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8561 ID=mRNA_8561|Name=jgi.p|Nanoce1779_2|603114|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at scaffold_26:205471..207662+ (Nannochloropsis oceanica)
CAGGTGCCTGGAAACCGGAACGGGTGGGAAGGTTTTATGAAGCGAGGCTT
GTGTGGTGGTGGATGGTGGAGGGCTCTGCAGCAGCGAACACTCCCCTCCT
CATCGTCCATGCCAGCCAGGCGACGACGATCACAAGTGTGGCAGAGGATT
GCCGAGACTCACAACCCCTTCCTTGACCTCGATGACGATGCGCAGCCTCC
TATGTGTCTGCGTGTGTCGATGAATGGCTCTCCTGTCTTCACTGCCCAGC
ATCGTGAGAGGGGGGGCCAAAAAGAAGTAAAGAAGAGGGACATCCCACCA
AACCACACTAACCATGCCTTTCTTGCGCCTTCCAACACAGACACGATGGC
CCCCAAGAAAGTCAATAAACGCGCGGGCAAGCCTCGCACGACGATGCTGG
CCCGAGGTGTACCCTCCTTGAGCCACTCGGCGGTACGTGCAGCAGACCCC
TCTTCCCCCCCCCCCCCCTCTCCCTCCCTCGCTCCCCTTGTCTTCCTTCC
CCTTCCGCTCCCTCACCATTTTTATTGACATACAACAGACCGTCAAGAAG
GGTGGCCGGTATAAGTTCTTCGGCAAGGGCGGGAAGAAGGCCGTGACCGC
GGCCCCCGCCACGGGCAAGGCCCCACGTTTCTACCCTGCGGATGACATTC
CCGTCCCTCGCCGTAGCGCCCGCCATGTGCAGAAGCCGACCAAGCTGAAG
GCTGGCATCGTACCGGGCTCCATTCTTATCATGCTTGCGGGCCGATTCCG
TGGCAAGCGTGTGGTGTTCCTCAAGCAGTTGGCATCGGGCACGCTGCTTG
TGACTGGTACGTCTCATGTGAGGAGAGGTGACAGTGGATTAGGAGGACAA
AGTTCTTGATCTTGGAGTGTTTTATTCTCCTTCTTCTGGTCTTTCCTTCC
TCTTCTTCTACGCTTCTGTCCCCTCGCTTTCTATGCTCCCTCGTCAAAAT
GAAGGCCCAAGGATTAAAATTGATTTATGCGATGGCCTGTGGCCTCACCC
TTCCCGCGTGGCGACATCCAAAAAGGACGCACATGGCCGACATACACAAC
CTGAAAACATTGAGGGAGAGAGGTGGAGGGAAGGAGAAGAGAGGGTTGTA
CCGAAGGAAAGGAGCGGGGAGAGGAGAGGGAGGGGGGGTGGAAGTGGGGG
GCAGGTCGTGAGGATAGGCAGGATGTTTTGGGCTAACCCTTCGCATTTCT
GTCAACGTCCAAGCGTCCTGTTTTTCCTCCCTTTCACTCTTCCCTCTTTT
TCTCATCTTCTATCGTTTTCTTCTGTGCTGCTCTTCTTTAATTCCGGACC
ACCTCTTTTCTCTGTGGGATCTGGGCGTGGGTGGTGACAGGGTGTTGATT
GGTGTTGCCTGGGGGGTGGCAAGAGGGCATGTGAAAGGGCCGATGACGTT
CTGGATTATGAGAGATGAGGGCTCTTCTTATTCTTTATTATTTTATTTGA
TGTCTTCGACTTCGACTTTACTACTGACTTACACTAGATTTATTTGCCAG
GAAGAGAGAGAAGGGAGAGCAACAACACTCAGTTATGCCACGCTCCACTT
GCGCAAACTCAACTCTTTCCTTTTTCTCTCCCTTCCCCCCCCCCCTTGCT
CCCTCCACTAGGCCCCTACTCTTTGAATGGCGTGCCTCTGCGACGCGTGA
ACCAAGCCTACGTCATCGTCACCTCCCAAGCGGTCGACATCTCGGCCGTC
AAGGTGCCTGCCACCATGGACGACAATTACTTCGCGCGTCCGGCGGATGC
GGAGGAGGGGGATATCCTGGCAGCAGGCACGGGAAAGAAAGCCACAGTAG
TATCTGAGGGAAGGAAGAAGGACCAGGAGGCCGTGGACACACAGGTGCTT
GCGGCGATCAAGAAGGTGCCGCAGTTAGACGGCTACGTGAAGGCCCGCTT
TTCGTTGAAGAAGGGGGTGAAGCCCCACGAGATCAAGTTCTGAGTTCCAG
AAATGTGATGAATATGGAAGGAGGAAGGACGCGCGCTGTTTGATTTCTCT
TCTGTTGGCATGAAGAGGATGGATGGGGAAGCAACGGGAGGTTTGTACTC
TCTTGTCATTCTTTTCAGGCAGGAGACGCGTAGGGGATGCATCGCGCGGC
GTGATTTAGTTTAGCTAAGCAATTATTTTACAATGCGCCCCCAAAAACAA
AACCCCAAAAGAAAGGAAAACAAAGACAGCTAGAATCAAAAA

Coding sequence (CDS) from alignment at scaffold_26:205471..207662+

>mRNA_8561 ID=mRNA_8561|Name=jgi.p|Nanoce1779_2|603114|organism=Nannochloropsis oceanica|type=CDS|length=2988bp|location=Sequence derived from alignment at scaffold_26:205471..207662+ (Nannochloropsis oceanica)
ATGAAGCGAGGCTTGTGTGGTGGTGGATGGTGGAGGGCTCTGCAGCAGCG
AACACTCCCCTCCTCATCGTCCATGCCAGCCAGGCGACGACGATCACAAG
TGTGGCAGAGGATTGCCGAGACTCACAACCCCTTCCTTGACCTCGATGAC
GATGCGCAGCCTCCTATGTGTCTGCGTGTGTCGATGAATGGCTCTCCTGT
CTTCACTGCCCAGCATCGTGAGAGGGGGGGCCAAAAAGAAGTAAAGAAGA
GGGACATCCCACCAAACCACACTAACCATGCCTTTCTTGCGCCTTCCAAC
ACAGACACGATGGCCCCCAAGAAAGTCAATAAACGCGCGGGCAAGCCTCG
CACGACGATGCTGGCCCGAGGTGTACCCTCCTTGAGCCACTCGGCGACCG
TCAAGAAGGGTGGCCGGTATAAGTTCTTCGGCAAGGGCGGGAAGAAGGCC
GTGACCGCGGCCCCCGCCACGGGCAAGGCCCCACGTTTCTACCCTGCGGA
TGACATTCCCGTCCCTCGCCGTAGCGCCCGCCATGTGCAGAAGCCGACCA
AGCTGAAGGCTGGCATCGTACCGGGCTCCATTCTTATCATGCTTGCGGGC
CGATTCCGTGGCAAGCGTGTGGTGTTCCTCAAGCAGTTGGCATCGGGCAC
GCTGCTTGTGACTGGCCCCTACTCTTTGAATGGCGTGCCTCTGCGACGCG
TGAACCAAGCCTACGTCATCGTCACCTCCCAAGCGGTCGACATCTCGGCC
GTCAAGGTGCCTGCCACCATGGACGACAATTACTTCGCGCGTCCGGCGGA
TGCGGAGGAGGGGGATATCCTGGCAGCAGGCACGGGAAAGAAAGCCACAG
TAGTATCTGAGGGAAGGAAGAAGGACCAGGAGGCCGTGGACACACAGGTG
CTTGCGGCGATCAAGAAGGTGCCGCAGTTAGACGGCTACGTGAAGGCCCG
CTTTTCGTTGAAGAAGGGGGTGAAGCCCCACGAGATCAAGTTCTGAATGA
AGCGAGGCTTGTGTGGTGGTGGATGGTGGAGGGCTCTGCAGCAGCGAACA
CTCCCCTCCTCATCGTCCATGCCAGCCAGGCGACGACGATCACAAGTGTG
GCAGAGGATTGCCGAGACTCACAACCCCTTCCTTGACCTCGATGACGATG
CGCAGCCTCCTATGTGTCTGCGTGTGTCGATGAATGGCTCTCCTGTCTTC
ACTGCCCAGCATCGTGAGAGGGGGGGCCAAAAAGAAGTAAAGAAGAGGGA
CATCCCACCAAACCACACTAACCATGCCTTTCTTGCGCCTTCCAACACAG
ACACGATGGCCCCCAAGAAAGTCAATAAACGCGCGGGCAAGCCTCGCACG
ACGATGCTGGCCCGAGGTGTACCCTCCTTGAGCCACTCGGCGACCGTCAA
GAAGGGTGGCCGGTATAAGTTCTTCGGCAAGGGCGGGAAGAAGGCCGTGA
CCGCGGCCCCCGCCACGGGCAAGGCCCCACGTTTCTACCCTGCGGATGAC
ATTCCCGTCCCTCGCCGTAGCGCCCGCCATGTGCAGAAGCCGACCAAGCT
GAAGGCTGGCATCGTACCGGGCTCCATTCTTATCATGCTTGCGGGCCGAT
TCCGTGGCAAGCGTGTGGTGTTCCTCAAGCAGTTGGCATCGGGCACGCTG
CTTGTGACTGGCCCCTACTCTTTGAATGGCGTGCCTCTGCGACGCGTGAA
CCAAGCCTACGTCATCGTCACCTCCCAAGCGGTCGACATCTCGGCCGTCA
AGGTGCCTGCCACCATGGACGACAATTACTTCGCGCGTCCGGCGGATGCG
GAGGAGGGGGATATCCTGGCAGCAGGCACGGGAAAGAAAGCCACAGTAGT
ATCTGAGGGAAGGAAGAAGGACCAGGAGGCCGTGGACACACAGGTGCTTG
CGGCGATCAAGAAGGTGCCGCAGTTAGACGGCTACGTGAAGGCCCGCTTT
TCGTTGAAGAAGGGGGTGAAGCCCCACGAGATCAAGTTCTGAATGAAGCG
AGGCTTGTGTGGTGGTGGATGGTGGAGGGCTCTGCAGCAGCGAACACTCC
CCTCCTCATCGTCCATGCCAGCCAGGCGACGACGATCACAAGTGTGGCAG
AGGATTGCCGAGACTCACAACCCCTTCCTTGACCTCGATGACGATGCGCA
GCCTCCTATGTGTCTGCGTGTGTCGATGAATGGCTCTCCTGTCTTCACTG
CCCAGCATCGTGAGAGGGGGGGCCAAAAAGAAGTAAAGAAGAGGGACATC
CCACCAAACCACACTAACCATGCCTTTCTTGCGCCTTCCAACACAGACAC
GATGGCCCCCAAGAAAGTCAATAAACGCGCGGGCAAGCCTCGCACGACGA
TGCTGGCCCGAGGTGTACCCTCCTTGAGCCACTCGGCGACCGTCAAGAAG
GGTGGCCGGTATAAGTTCTTCGGCAAGGGCGGGAAGAAGGCCGTGACCGC
GGCCCCCGCCACGGGCAAGGCCCCACGTTTCTACCCTGCGGATGACATTC
CCGTCCCTCGCCGTAGCGCCCGCCATGTGCAGAAGCCGACCAAGCTGAAG
GCTGGCATCGTACCGGGCTCCATTCTTATCATGCTTGCGGGCCGATTCCG
TGGCAAGCGTGTGGTGTTCCTCAAGCAGTTGGCATCGGGCACGCTGCTTG
TGACTGGCCCCTACTCTTTGAATGGCGTGCCTCTGCGACGCGTGAACCAA
GCCTACGTCATCGTCACCTCCCAAGCGGTCGACATCTCGGCCGTCAAGGT
GCCTGCCACCATGGACGACAATTACTTCGCGCGTCCGGCGGATGCGGAGG
AGGGGGATATCCTGGCAGCAGGCACGGGAAAGAAAGCCACAGTAGTATCT
GAGGGAAGGAAGAAGGACCAGGAGGCCGTGGACACACAGGTGCTTGCGGC
GATCAAGAAGGTGCCGCAGTTAGACGGCTACGTGAAGGCCCGCTTTTCGT
TGAAGAAGGGGGTGAAGCCCCACGAGATCAAGTTCTGA

Synonyms

Publications