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Properties
| Property Name | Value |
|---|
| TranscriptId | 673615 |
| Track | FilteredModels2 |
| ProteinId | 673529 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_26 | supercontig | scaffold_26:202952..205413 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8560 ID=mRNA_8560|Name=jgi.p|Nanoce1779_2|673529|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp
ATGGAGGAGGGAGAGGACCGCGATGCTTTCTCGACCACCACACAGAGGGA
GGTGACAGAGGGGGAAGACTGTGAGGATGATGCCAGACGCGCCGCGGAGG
GGCATGTGTCATCATATCCATCGGCGTCGATCGCCAAGATCGAAAAAGAC
ACATCTCCTGCCCCCGCCCTCTCCAATGTCCTTGATTTGGATGAATCCTA
CTTCAACAACCTAATAACAGAGGGGGAACCATGGGCTATCATGTTTTATT
CGCCCACCTGTGGACACTGCCAGCATTTTGCCCCCACGTGGGTAGCAGTC
TGGAAAGCAATACAGGATGTGAAGAGGAGTAACAATGGTCGGTTGGGAGG
CCTGAGAATAGGAGCAGTGAGCTGCTTGGCCGAGCCAGGGGTTTGCCGGA
ATGAGAAAGTGAACAGCTACCCGACGTTGAAGGCGTTTGGGCTGACTGAG
GGGAATGGGAAGGGAGTGGTAGTGAGACAGCAAACAGAAAAAAAAATTGT
TGATTGGTTGATGGACAAGTATACAGAAGCAGCAGCAGCAGCAGTGCCAG
TAGCAGTGACAGCAGCTGCAGCGGAAGCAGGTCAAGGCTCCTTTTCAATT
GACGAGGACGGTCAAAAGCGCTCTGCAGCTGGGAGTGCTAATGCTGTCGC
TACGCCCAACGGTGCCGATTCCAAAAACACCAGGACGACTGCCCAGGGCC
CGGAAGAAATAGAAGCACAAGCGAAATTCTCTGTAGAGGAGCTGAAACGA
GCGAGGGTAGAGGATGCTTTCACTTCCTTGAGGTTCGCATTGGACCACGA
TGTATTCTTGGGGAGTAAGGTCTTGATGGAGGAAGGGCTTGTCAGTCTCA
AAGACCTCCTGCATGTCCTCTCCTTGCTTTTTCCCGGCAAGAAGAGGAGG
GCCGCGTTCAGGGGATTGCTCGAGAGCGTGTACCCCCTCGTAGAGTTGTC
GATCGAGGAATGGGAGGCTGCTCTGGGCGTGCATCTTGACCCGCTCGCCC
CTCGAGTGGCAGCAGCAGGAGTAGCAGGAGCAGTGGGGGCAGTTGCCACG
GCAGGTGTGGGGAGGAAAAAGAAGGAGTATGAGTGGGTCGTGTGTACGTC
GGCGGCAGGCTACACGTGCGGCCTGTGGATGTTGTTCCACCTCTTGACCG
TGAAGAGCGCCGTGCGTGCAGAGAGCAAGGCTACGTCTTATTCGACGTCC
ATTATCTCCCCTCCTTATGTGATGAAAATGATCCAGGGATTCGTCTCCCA
TTTCTTTGGCTGCCAAGACTGCAGGACGCACTTCCTGGCAGCGTATGAGG
AGGGGAGGGCGAGGTGGGAGGGAGGAAGGGAGGAAGGGAAGGGGGCTGTA
TGGTGGGTATGGTGGCTGCATGACAAGGTGAACTTGCGGTTGGGGAAGAG
GAGGTGGCCGACGAGGGAAAGATGCAGGAGGTGCTGGAAGGAGGGAGAGA
AGGAGGACGGGGGGGAGGAAGAGCCGGAATGGGAGGCCATTTATGAGGCG
ATGGTGGAGGACTATAATGAGGGAGAAGGGGAGGGAGGAAGGGGGGGAGG
GGGCATTGCTGTCTTTGTATTCGCGACGCGCGGAGGGGAGGAAGGAGACG
TGGAGGGAGCGACGGAGGTGGACGTTGCACAAAAAAATAATGGAAAGGAC
TCCTCGAAATGGTTGTATTTTAAATAAGGTTTTAAAGAAAGTACACGCTT
CTAAGAAGGTTAGGTTTGGTAGGAAGACCTCTGGGAGGGGATGAGGGAAG
GAGGAAGGAAGGAAGGGATGTAAATCATCTTGCCCTGCTCCTGCTCCTCA
TGCTCCTGCTCCTGCCCTTGCTGTATATACTTTTTTGTTCACGGTCTCCG
GATTCACTGTCCTACCTTCCCTCCCTCCTTATCTCCCTCCCTTCTCCCCT
TCTTCGTCTCGACAGGCTAGACCGGGATCCTTAACACCTCACTCGCATTC
CGCCACACAACCCCCTCCCTCCACTCCTCTTCCTCCATCCCTCCCTCCCC
CTC back to topprotein sequence of jgi.p|Nanoce1779_2|673529 >mRNA_8560-protein ID=mRNA_8560-protein|Name=jgi.p|Nanoce1779_2|673529|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MEEGEDRDAFSTTTQREVTEGEDCEDDARRAAEGHVSSYPSASIAKIEKD
TSPAPALSNVLDLDESYFNNLITEGEPWAIMFYSPTCGHCQHFAPTWVAV
WKAIQDVKRSNNGRLGGLRIGAVSCLAEPGVCRNEKVNSYPTLKAFGLTE
GNGKGVVVRQQTEKKIVDWLMDKYTEAAAAAVPVAVTAAAAEAGQGSFSI
DEDGQKRSAAGSANAVATPNGADSKNTRTTAQGPEEIEAQAKFSVEELKR
ARVEDAFTSLRFALDHDVFLGSKVLMEEGLVSLKDLLHVLSLLFPGKKRR
AAFRGLLESVYPLVELSIEEWEAALGVHLDPLAPRVAAAGVAGAVGAVAT
AGVGRKKKEYEWVVCTSAAGYTCGLWMLFHLLTVKSAVRAESKATSYSTS
IISPPYVMKMIQGFVSHFFGCQDCRTHFLAAYEEGRARWEGGREEGKGAV
WWVWWLHDKVNLRLGKRRWPTRERCRRCWKEGEKEDGGEEEPEWEAIYEA
MVEDYNEGEGEGGRGGGGIAVFVFATRGGEEGDVEGATEVDVAQKNNGKD
SSKWLYFK* back to topmRNA from alignment at scaffold_26:202952..205413- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8560 ID=mRNA_8560|Name=jgi.p|Nanoce1779_2|673529|organism=Nannochloropsis oceanica|type=mRNA|length=2462bp|location=Sequence derived from alignment at scaffold_26:202952..205413- (Nannochloropsis oceanica)
ATGGAGGAGGGAGAGGACCGCGATGCTTTCTCGACCACCACACAGAGGGA
GGTGACAGAGGGGGAAGACTGTGAGGATGATGCCAGACGCGCCGCGGAGG
GGCATGTGTCATCATATCCATCGGCGTCGATCGCCAAGGTGCTTTTTTTG
ACCTGTGCACACGCCTCACTCTCACCCGTTGCACCTCATGCATTTGACCG
CAGGGGACGCTAGCACGATTGGACAAGGAGGTCGTGGTGACCGAGCCAAA
GTCGGCCATGAGAAGCCCTCCTCATGTGCGACTAATACGTCGACGCTCCT
CCTCAGTCCTCCAACTCCTCCTTCTCCTAGCTATACCCCTTTCCAAAGCT
TACGAACAATACCTCTTTAGCAGAACCACCACTTCCCCCTCCAAGATCGA
AAAAGACACATCTCCTGCCCCCGCCCTCTCCAATGTCCTTGATTTGGATG
AATCCTACTTCAACAACCTAATAACAGAGGGGGAACCATGGGCTATCATG
TTTTATTCGCCCACCTGTGGACACTGCCAGCATTTTGCCCCCACGTGGGT
AGCAGTCTGGAAAGCAATACAGGATGTGAAGAGGAGTAACAATGGTCGGT
TGGGAGGCCTGAGAATAGGAGCAGTGAGCTGCTTGGCCGAGCCAGGGGTT
TGCCGGAATGAGAAAGTGAACAGCTACCCGACGTTGAAGGCGTTTGGGCT
GACTGAGGGGAATGGGAAGGGAGTGGTAGTGAGACAGCAAACAGAAAAAA
AAATTGTTGATTGGTTGATGGACAAGTATACAGAAGCAGCAGCAGCAGCA
GTGCCAGTAGCAGTGACAGCAGCTGCAGCGGAAGCAGGTCAAGGCTCCTT
TTCAATTGACGAGGACGGTCAAAAGCGCTCTGCAGCTGGGAGTGCTAATG
CTGTCGCTACGCCCAACGGTGCCGATTCCAAAAACACCAGGACGACTGCC
CAGGGCCCGGAAGAAATAGAAGCACAAGCGAAATTCTCTGTAGAGGAGCT
GAAACGAGCGAGGGTAGAGGATGCTTTCACTTCCTTGAGGTTCGCATTGG
ACCACGATGTATTCTTGGGGAGTAAGGTCTTGATGGAGGAAGGGCTTGTC
AGTCTCAAAGACCTCCTGCATGTCCTCTCCTTGCTTTTTCCCGGCAAGAA
GAGGAGGGCCGCGTTCAGGGGATTGCTCGAGAGCGTGTACCCCCTCGTAG
AGTTGTCGATCGAGGAATGGGAGGCTGCTCTGGGCGTGCATCTTGACCCG
CTCGCCCCTCGAGTGGCAGCAGCAGGAGTAGCAGGAGCAGTGGGGGCAGT
TGCCACGGCAGGTGTGGGGAGGAAAAAGAAGGAGTATGAGTGGGTCGTGT
GTACGTCGGCGGCAGGCTACACGTGCGGCCTGTGGATGTTGTTCCACCTC
TTGACCGTGAAGAGCGCCGTGCGTGCAGAGAGCAAGGCTACGTCTTATTC
GACGTCCATTATCTCCCCTCCTTATGTGATGAAAATGATCCAGGGATTCG
TCTCCCATTTCTTTGGCTGCCAAGACTGCAGGACGCACTTCCTGGCAGCG
TATGAGGAGGGGAGGGCGAGGTGGGAGGGAGGAAGGGAGGAAGGGAAGGG
GGCTGTATGGTGGGTATGGTGGCTGCATGACAAGGTGAACTTGCGGTTGG
GGAAGAGGAGGTGGCCGACGAGGGAAAGATGCAGGAGGTGCTGGAAGGAG
GGAGAGAAGGAGGACGGGGGGGAGGAAGAGCCGGAATGGGAGGCCATTTA
TGAGGCGATGGTGGAGGACTATAATGTACATGACACGGAGTTGAAAGGAG
AGAGAGAGTGGGGAGGGAAAGGGGGGGGGGGGGGTGGAGTTGTCGTCGTT
GAGTCGGGATTATGTGTATTTGAGCGGGTTTATTGTGGTGCTGTGTGTTG
TGTTTTCTCTAAGGATGCGGGAAAAATTTAGGACGGGCCAGAGGAAGAAG
AGAAGGGACACGATGCTGCCTTTGTAGGAGGGAGAAGGGGAGGGAGGAAG
GGGGGGAGGGGGCATTGCTGTCTTTGTATTCGCGACGCGCGGAGGGGAGG
AAGGAGACGTGGAGGGAGCGACGGAGGTGGACGTTGCACAAAAAAATAAT
GGAAAGGACTCCTCGAAATGGTTGTATTTTAAATAAGGTTTTAAAGAAAG
TACACGCTTCTAAGAAGGTTAGGTTTGGTAGGAAGACCTCTGGGAGGGGA
TGAGGGAAGGAGGAAGGAAGGAAGGGATGTAAATCATCTTGCCCTGCTCC
TGCTCCTCATGCTCCTGCTCCTGCCCTTGCTGTATATACTTTTTTGTTCA
CGGTCTCCGGATTCACTGTCCTACCTTCCCTCCCTCCTTATCTCCCTCCC
TTCTCCCCTTCTTCGTCTCGACAGGCTAGACCGGGATCCTTAACACCTCA
CTCGCATTCCGCCACACAACCCCCTCCCTCCACTCCTCTTCCTCCATCCC
TCCCTCCCCCTC back to topCoding sequence (CDS) from alignment at scaffold_26:202952..205413- >mRNA_8560 ID=mRNA_8560|Name=jgi.p|Nanoce1779_2|673529|organism=Nannochloropsis oceanica|type=CDS|length=5031bp|location=Sequence derived from alignment at scaffold_26:202952..205413- (Nannochloropsis oceanica)
GAGGGAGAAGGGGAGGGAGGAAGGGGGGGAGGGGGCATTGCTGTCTTTGT
ATTCGCGACGCGCGGAGGGGAGGAAGGAGACGTGGAGGGAGCGACGGAGG
TGGACGTTGCACAAAAAAATAATGGAAAGGACTCCTCGAAATGGTTGTAT
TTTAAATAAATCGAAAAAGACACATCTCCTGCCCCCGCCCTCTCCAATGT
CCTTGATTTGGATGAATCCTACTTCAACAACCTAATAACAGAGGGGGAAC
CATGGGCTATCATGTTTTATTCGCCCACCTGTGGACACTGCCAGCATTTT
GCCCCCACGTGGGTAGCAGTCTGGAAAGCAATACAGGATGTGAAGAGGAG
TAACAATGGTCGGTTGGGAGGCCTGAGAATAGGAGCAGTGAGCTGCTTGG
CCGAGCCAGGGGTTTGCCGGAATGAGAAAGTGAACAGCTACCCGACGTTG
AAGGCGTTTGGGCTGACTGAGGGGAATGGGAAGGGAGTGGTAGTGAGACA
GCAAACAGAAAAAAAAATTGTTGATTGGTTGATGGACAAGTATACAGAAG
CAGCAGCAGCAGCAGTGCCAGTAGCAGTGACAGCAGCTGCAGCGGAAGCA
GGTCAAGGCTCCTTTTCAATTGACGAGGACGGTCAAAAGCGCTCTGCAGC
TGGGAGTGCTAATGCTGTCGCTACGCCCAACGGTGCCGATTCCAAAAACA
CCAGGACGACTGCCCAGGGCCCGGAAGAAATAGAAGCACAAGCGAAATTC
TCTGTAGAGGAGCTGAAACGAGCGAGGGTAGAGGATGCTTTCACTTCCTT
GAGGTTCGCATTGGACCACGATGTATTCTTGGGGAGTAAGGTCTTGATGG
AGGAAGGGCTTGTCAGTCTCAAAGACCTCCTGCATGTCCTCTCCTTGCTT
TTTCCCGGCAAGAAGAGGAGGGCCGCGTTCAGGGGATTGCTCGAGAGCGT
GTACCCCCTCGTAGAGTTGTCGATCGAGGAATGGGAGGCTGCTCTGGGCG
TGCATCTTGACCCGCTCGCCCCTCGAGTGGCAGCAGCAGGAGTAGCAGGA
GCAGTGGGGGCAGTTGCCACGGCAGGTGTGGGGAGGAAAAAGAAGGAGTA
TGAGTGGGTCGTGTGTACGTCGGCGGCAGGCTACACGTGCGGCCTGTGGA
TGTTGTTCCACCTCTTGACCGTGAAGAGCGCCGTGCGTGCAGAGAGCAAG
GCTACGTCTTATTCGACGTCCATTATCTCCCCTCCTTATGTGATGAAAAT
GATCCAGGGATTCGTCTCCCATTTCTTTGGCTGCCAAGACTGCAGGACGC
ACTTCCTGGCAGCGTATGAGGAGGGGAGGGCGAGGTGGGAGGGAGGAAGG
GAGGAAGGGAAGGGGGCTGTATGGTGGGTATGGTGGCTGCATGACAAGGT
GAACTTGCGGTTGGGGAAGAGGAGGTGGCCGACGAGGGAAAGATGCAGGA
GGTGCTGGAAGGAGGGAGAGAAGGAGGACGGGGGGGAGGAAGAGCCGGAA
TGGGAGGCCATTTATGAGGCGATGGTGGAGGACTATAATATGGAGGAGGG
AGAGGACCGCGATGCTTTCTCGACCACCACACAGAGGGAGGTGACAGAGG
GGGAAGACTGTGAGGATGATGCCAGACGCGCCGCGGAGGGGCATGTGTCA
TCATATCCATCGGCGTCGATCGCCAAGGAGGGAGAAGGGGAGGGAGGAAG
GGGGGGAGGGGGCATTGCTGTCTTTGTATTCGCGACGCGCGGAGGGGAGG
AAGGAGACGTGGAGGGAGCGACGGAGGTGGACGTTGCACAAAAAAATAAT
GGAAAGGACTCCTCGAAATGGTTGTATTTTAAATAAATCGAAAAAGACAC
ATCTCCTGCCCCCGCCCTCTCCAATGTCCTTGATTTGGATGAATCCTACT
TCAACAACCTAATAACAGAGGGGGAACCATGGGCTATCATGTTTTATTCG
CCCACCTGTGGACACTGCCAGCATTTTGCCCCCACGTGGGTAGCAGTCTG
GAAAGCAATACAGGATGTGAAGAGGAGTAACAATGGTCGGTTGGGAGGCC
TGAGAATAGGAGCAGTGAGCTGCTTGGCCGAGCCAGGGGTTTGCCGGAAT
GAGAAAGTGAACAGCTACCCGACGTTGAAGGCGTTTGGGCTGACTGAGGG
GAATGGGAAGGGAGTGGTAGTGAGACAGCAAACAGAAAAAAAAATTGTTG
ATTGGTTGATGGACAAGTATACAGAAGCAGCAGCAGCAGCAGTGCCAGTA
GCAGTGACAGCAGCTGCAGCGGAAGCAGGTCAAGGCTCCTTTTCAATTGA
CGAGGACGGTCAAAAGCGCTCTGCAGCTGGGAGTGCTAATGCTGTCGCTA
CGCCCAACGGTGCCGATTCCAAAAACACCAGGACGACTGCCCAGGGCCCG
GAAGAAATAGAAGCACAAGCGAAATTCTCTGTAGAGGAGCTGAAACGAGC
GAGGGTAGAGGATGCTTTCACTTCCTTGAGGTTCGCATTGGACCACGATG
TATTCTTGGGGAGTAAGGTCTTGATGGAGGAAGGGCTTGTCAGTCTCAAA
GACCTCCTGCATGTCCTCTCCTTGCTTTTTCCCGGCAAGAAGAGGAGGGC
CGCGTTCAGGGGATTGCTCGAGAGCGTGTACCCCCTCGTAGAGTTGTCGA
TCGAGGAATGGGAGGCTGCTCTGGGCGTGCATCTTGACCCGCTCGCCCCT
CGAGTGGCAGCAGCAGGAGTAGCAGGAGCAGTGGGGGCAGTTGCCACGGC
AGGTGTGGGGAGGAAAAAGAAGGAGTATGAGTGGGTCGTGTGTACGTCGG
CGGCAGGCTACACGTGCGGCCTGTGGATGTTGTTCCACCTCTTGACCGTG
AAGAGCGCCGTGCGTGCAGAGAGCAAGGCTACGTCTTATTCGACGTCCAT
TATCTCCCCTCCTTATGTGATGAAAATGATCCAGGGATTCGTCTCCCATT
TCTTTGGCTGCCAAGACTGCAGGACGCACTTCCTGGCAGCGTATGAGGAG
GGGAGGGCGAGGTGGGAGGGAGGAAGGGAGGAAGGGAAGGGGGCTGTATG
GTGGGTATGGTGGCTGCATGACAAGGTGAACTTGCGGTTGGGGAAGAGGA
GGTGGCCGACGAGGGAAAGATGCAGGAGGTGCTGGAAGGAGGGAGAGAAG
GAGGACGGGGGGGAGGAAGAGCCGGAATGGGAGGCCATTTATGAGGCGAT
GGTGGAGGACTATAATATGGAGGAGGGAGAGGACCGCGATGCTTTCTCGA
CCACCACACAGAGGGAGGTGACAGAGGGGGAAGACTGTGAGGATGATGCC
AGACGCGCCGCGGAGGGGCATGTGTCATCATATCCATCGGCGTCGATCGC
CAAGGAGGGAGAAGGGGAGGGAGGAAGGGGGGGAGGGGGCATTGCTGTCT
TTGTATTCGCGACGCGCGGAGGGGAGGAAGGAGACGTGGAGGGAGCGACG
GAGGTGGACGTTGCACAAAAAAATAATGGAAAGGACTCCTCGAAATGGTT
GTATTTTAAATAAATCGAAAAAGACACATCTCCTGCCCCCGCCCTCTCCA
ATGTCCTTGATTTGGATGAATCCTACTTCAACAACCTAATAACAGAGGGG
GAACCATGGGCTATCATGTTTTATTCGCCCACCTGTGGACACTGCCAGCA
TTTTGCCCCCACGTGGGTAGCAGTCTGGAAAGCAATACAGGATGTGAAGA
GGAGTAACAATGGTCGGTTGGGAGGCCTGAGAATAGGAGCAGTGAGCTGC
TTGGCCGAGCCAGGGGTTTGCCGGAATGAGAAAGTGAACAGCTACCCGAC
GTTGAAGGCGTTTGGGCTGACTGAGGGGAATGGGAAGGGAGTGGTAGTGA
GACAGCAAACAGAAAAAAAAATTGTTGATTGGTTGATGGACAAGTATACA
GAAGCAGCAGCAGCAGCAGTGCCAGTAGCAGTGACAGCAGCTGCAGCGGA
AGCAGGTCAAGGCTCCTTTTCAATTGACGAGGACGGTCAAAAGCGCTCTG
CAGCTGGGAGTGCTAATGCTGTCGCTACGCCCAACGGTGCCGATTCCAAA
AACACCAGGACGACTGCCCAGGGCCCGGAAGAAATAGAAGCACAAGCGAA
ATTCTCTGTAGAGGAGCTGAAACGAGCGAGGGTAGAGGATGCTTTCACTT
CCTTGAGGTTCGCATTGGACCACGATGTATTCTTGGGGAGTAAGGTCTTG
ATGGAGGAAGGGCTTGTCAGTCTCAAAGACCTCCTGCATGTCCTCTCCTT
GCTTTTTCCCGGCAAGAAGAGGAGGGCCGCGTTCAGGGGATTGCTCGAGA
GCGTGTACCCCCTCGTAGAGTTGTCGATCGAGGAATGGGAGGCTGCTCTG
GGCGTGCATCTTGACCCGCTCGCCCCTCGAGTGGCAGCAGCAGGAGTAGC
AGGAGCAGTGGGGGCAGTTGCCACGGCAGGTGTGGGGAGGAAAAAGAAGG
AGTATGAGTGGGTCGTGTGTACGTCGGCGGCAGGCTACACGTGCGGCCTG
TGGATGTTGTTCCACCTCTTGACCGTGAAGAGCGCCGTGCGTGCAGAGAG
CAAGGCTACGTCTTATTCGACGTCCATTATCTCCCCTCCTTATGTGATGA
AAATGATCCAGGGATTCGTCTCCCATTTCTTTGGCTGCCAAGACTGCAGG
ACGCACTTCCTGGCAGCGTATGAGGAGGGGAGGGCGAGGTGGGAGGGAGG
AAGGGAGGAAGGGAAGGGGGCTGTATGGTGGGTATGGTGGCTGCATGACA
AGGTGAACTTGCGGTTGGGGAAGAGGAGGTGGCCGACGAGGGAAAGATGC
AGGAGGTGCTGGAAGGAGGGAGAGAAGGAGGACGGGGGGGAGGAAGAGCC
GGAATGGGAGGCCATTTATGAGGCGATGGTGGAGGACTATAATATGGAGG
AGGGAGAGGACCGCGATGCTTTCTCGACCACCACACAGAGGGAGGTGACA
GAGGGGGAAGACTGTGAGGATGATGCCAGACGCGCCGCGGAGGGGCATGT
GTCATCATATCCATCGGCGTCGATCGCCAAG back to top
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