jgi.p|Nanoce1779_2|574387, mRNA_856 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574387
Unique Name	mRNA_856
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1042
Alignment location	scaffold_2:593045..594086 +

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Properties


Property Name	Value
TranscriptId	574473
Track	FilteredModels2
ProteinId	574387

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:593045..594086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574387	gene_856	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574387	mRNA_856-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_856	CDS_856	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:593045..594086+
coding sequence from alignment at scaffold_2:593045..594086+

mRNA sequence

>mRNA_856 ID=mRNA_856|Name=jgi.p|Nanoce1779_2|574387|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp
CCATCACAATCCATTTGCATAACGGACGTGCGTGTTGTGCTTTGTCCTGT
GCGAGGGCCCCATTCGCACTGACTCTCTGTGTCGTTTCTCTCCCATGACC
ATACATACATGGGGTAACTGTCCTGGACAGGAAAAATGGACTCGCCAACG
CCGACCAAGGACTACTACTCCATCCTTGGCGTTCCTCGGAACTCAAGCGA
TGAAGCCATTAAGGCCCGCTATCGACAGCTCGCCATGGACTTGCACCCCG
ATCGGTGTGCGGCAGGCGATGTGGCCTCCGTGGAGCGGTTCAAGGCAATA
TCAGAGGCATACCGAGTGCTGGTGGACAGTGGGCAGCGACGCATTTTGGA
CGATTATTTGGAGGGGAGGAGGTTTGCCGGGGCCCGCCTTCGGGGGGACG
AAGGCTTCTTTGACCGCTTGGCGGGGGTGCGACGGCCGAAGCCACCTCCC
GGGTCAAGAAGAGGAGGAGGTGCATCATCCAAGGCGTTTCGATTCATTGA
GATTGCTCTTTCACCGCGGGTGTTGGTGATGGGATTGGGTGTGGGGTTCA
TGAGCTACATAGCTTTTGGGCCTCGCGATGAAAATTTCGACCACACGGAG
GGTATGCTGGTGCCGGCGTGGTACAACCAAAGGTAGGCGATTTGTGTTGG
GTCAAAAGAACTAATGTACCGCGTTGATCTTGTCGTTGCAGCCTAAATTC
ATCCCTTTTTGTCACAAATCCTCTCCTCCTTTTTCTCGAACACAGAACAA
AACGTTGGGAGACGCCCGCGCCGTGGGACCCCGCCTATCGAGCAGCAGAA
ACTAAGCATCACGCCAGGGTATCCAAGTACCATGTGTTTGAGTCCACGCC
TCCAGGTCCGGGAGGAGAAAATGCAGGGGGAGGAGGACGGGATGGAGGAA
GCTCCGAGGGAAAAGGTTAGTGTGTATATCTGAAGGGGAGGAGGATGTAA
ATGGTCATTTGAATAGGAAAGCCAGAGAATGAGTAGAAAGCGAAGAAGAA
AATAAGGGAGTGTACTCATGTGACCACTCTCCATTTGAACGG

protein sequence of jgi.p|Nanoce1779_2|574387

>mRNA_856-protein ID=mRNA_856-protein|Name=jgi.p|Nanoce1779_2|574387|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MDSPTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVE
RFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFDRLAGVRR
PKPPPGSRRGGGASSKAFRFIEIALSPRVLVMGLGVGFMSYIAFGPRDEN
FDHTEGMLVPAWYNQR*

mRNA from alignment at scaffold_2:593045..594086+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_856 ID=mRNA_856|Name=jgi.p|Nanoce1779_2|574387|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp|location=Sequence derived from alignment at scaffold_2:593045..594086+ (Nannochloropsis oceanica)
CCATCACAATCCATTTGCATAACGGACGTGCGTGTTGTGCTTTGTCCTGT
GCGAGGGCCCCATTCGCACTGACTCTCTGTGTCGTTTCTCTCCCATGACC
ATACATACATGGGGTAACTGTCCTGGACAGGAAAAATGGACTCGCCAACG
CCGACCAAGGACTACTACTCCATCCTTGGCGTTCCTCGGAACTCAAGCGA
TGAAGCCATTAAGGCCCGCTATCGACAGCTCGCCATGGACTTGCACCCCG
ATCGGTGTGCGGCAGGCGATGTGGCCTCCGTGGAGCGGTTCAAGGCAATA
TCAGAGGCATACCGAGTGCTGGTGGACAGTGGGCAGCGACGCATTTTGGA
CGATTATTTGGAGGGGAGGAGGTTTGCCGGGGCCCGCCTTCGGGGGGACG
AAGGCTTCTTTGACCGCTTGGCGGGGGTGCGACGGCCGAAGCCACCTCCC
GGGTCAAGAAGAGGAGGAGGTGCATCATCCAAGGCGTTTCGATTCATTGA
GATTGCTCTTTCACCGCGGGTGTTGGTGATGGGATTGGGTGTGGGGTTCA
TGAGCTACATAGCTTTTGGGCCTCGCGATGAAAATTTCGACCACACGGAG
GGTATGCTGGTGCCGGCGTGGTACAACCAAAGGTAGGCGATTTGTGTTGG
GTCAAAAGAACTAATGTACCGCGTTGATCTTGTCGTTGCAGCCTAAATTC
ATCCCTTTTTGTCACAAATCCTCTCCTCCTTTTTCTCGAACACAGAACAA
AACGTTGGGAGACGCCCGCGCCGTGGGACCCCGCCTATCGAGCAGCAGAA
ACTAAGCATCACGCCAGGGTATCCAAGTACCATGTGTTTGAGTCCACGCC
TCCAGGTCCGGGAGGAGAAAATGCAGGGGGAGGAGGACGGGATGGAGGAA
GCTCCGAGGGAAAAGGTTAGTGTGTATATCTGAAGGGGAGGAGGATGTAA
ATGGTCATTTGAATAGGAAAGCCAGAGAATGAGTAGAAAGCGAAGAAGAA
AATAAGGGAGTGTACTCATGTGACCACTCTCCATTTGAACGG

Coding sequence (CDS) from alignment at scaffold_2:593045..594086+

>mRNA_856 ID=mRNA_856|Name=jgi.p|Nanoce1779_2|574387|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_2:593045..594086+ (Nannochloropsis oceanica)
ATGGACTCGCCAACGCCGACCAAGGACTACTACTCCATCCTTGGCGTTCC
TCGGAACTCAAGCGATGAAGCCATTAAGGCCCGCTATCGACAGCTCGCCA
TGGACTTGCACCCCGATCGGTGTGCGGCAGGCGATGTGGCCTCCGTGGAG
CGGTTCAAGGCAATATCAGAGGCATACCGAGTGCTGGTGGACAGTGGGCA
GCGACGCATTTTGGACGATTATTTGGAGGGGAGGAGGTTTGCCGGGGCCC
GCCTTCGGGGGGACGAAGGCTTCTTTGACCGCTTGGCGGGGGTGCGACGG
CCGAAGCCACCTCCCGGGTCAAGAAGAGGAGGAGGTGCATCATCCAAGGC
GTTTCGATTCATTGAGATTGCTCTTTCACCGCGGGTGTTGGTGATGGGAT
TGGGTGTGGGGTTCATGAGCTACATAGCTTTTGGGCCTCGCGATGAAAAT
TTCGACCACACGGAGGGTATGCTGGTGCCGGCGTGGTACAACCAAAGGTA
G

Synonyms

Publications