jgi.p|Nanoce1779_2|603079, mRNA_8554 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603079
Unique NamemRNA_8554
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1487
Alignment locationscaffold_26:184093..186892 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603165
TrackFilteredModels2
ProteinId603079
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:184093..186892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603079gene_8554Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603079mRNA_8554-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8554CDS_8554Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8554 ID=mRNA_8554|Name=jgi.p|Nanoce1779_2|603079|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp
GCCCCTACTTTTCCATACATCGTCCTCATCTTCTGGCCTTTCCATCTCCT
CCTCCTCGTCTTTCCCCTCCTCCTCCTCCTGCTGCCGCAATTGAACTGAT
CCCCTCAAACGCAAATGCATCCCGGGGCTCTCTGTGCTGCTCACCACAGG
CTCCACATACTCATCTTTCAATGTCACAGCACGTTGTCTCCTGTCTGCCG
TCGCTGCTGTCAGGACAGTTTCTCGGCTCACCCAGGACTCTTGCAGAAGG
GCGTCGATACAGGTAGCTCGGAGAAAATTGAGAAGCTGAGGAAGCTCGTT
TCGATGCGAGACGGCTTGAATGACCGCGCAGCGCTCGTCATGACCGGCGT
TGTCCATCGCGTTATACACGATCTGGAGAGGCAGAGGACAAAGGGGTGGA
GAGGTCGTGTACAGCAAGGGCTTCGAAAGGGACAGAGCTGCGTCGGTTTT
GGACGGAAATTTCCCCCTGCTTGTGCCAATATTTTGTCTCGCGCTTGAGC
ACAGTCACAGCAATACCTGCGCCAGTGTACCATCGGCAAGTCATGAAGTT
CCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGGCGTGGCAC
AATGCTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGTCAGAGCGC
TCGATCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTCCGGGTCTT
CAGTGAGATTGAGCAGGAGAAAATCTTCAGGGACTACCGCATCGAGAGCC
TGGCTAACAACTCCATCCTCTTCGAGATCGGCCTGTCCAACCTTATCAAG
TCCTTCACCTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAGCTGGCAAA
AAGGGGCGGACAGCCGTGCATATGCCTAGAAGCCAGGGCGCTGGACATTG
AGCTCCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGGACATCCAG
TACTACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGTTGCC
CTACAACCGCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAGCATGGACC
GCTTTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGCTGCATGTG
CAGAATGACAGGTGTCATGTGCAGACGTTTTATGGCAACTTGATACCGCG
CTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGATGGAGGGA
CAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGCTGCTGGCG
GCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTCTGCTGTCT
GATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGGACATGCGG
GCTCTTTGACATACTACCTGCCTATCTATCTTGTGTAGGAGTAGGAGGCG
GAGGTGGAAGAGGAAGAGGAGGAGGGGGAGAAGAAGACAAAAAAGGAGGA
GAAGGAGGAGATGGATGGTGACTTGTGTCAGTTAGAG
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protein sequence of jgi.p|Nanoce1779_2|603079

>mRNA_8554-protein ID=mRNA_8554-protein|Name=jgi.p|Nanoce1779_2|603079|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MKFRAGLVAKDLSLLNGVAQCFEKIGPSCLIYLSERSIKFASPKLGSDDV
RVFSEIEQEKIFRDYRIESLANNSILFEIGLSNLIKSFTSAKTAQFVKLK
LAKRGGQPCICLEARALDIELLHEIPIRVMRAADIQYYAPPDVPVPRVQL
ELPYNRSMRTVLERFKSMDRFCFVDGDMGGSLRLHVQNDRCHVQTFYGNL
IPRYSEGMAEDEEGREDGGTGFPSCSIKLDTRRLLAALYFLGGIKYETAL
CCLIEASCLVLHVALGGHAGSLTYYLPIYLV*
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mRNA from alignment at scaffold_26:184093..186892+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8554 ID=mRNA_8554|Name=jgi.p|Nanoce1779_2|603079|organism=Nannochloropsis oceanica|type=mRNA|length=2800bp|location=Sequence derived from alignment at scaffold_26:184093..186892+ (Nannochloropsis oceanica)
GCCCCTACTTTTCCATACATCGTCCTCATCTTCTGGCCTTTCCATCTCCT CCTCCTCGTCTTTCCCCTCCTCCTCCTCCTGCTGCCGCAATTGAACTGAT CCCCTCAAACGCAAATGCATCCCGGGGCTCTCTGTGCTGCTCACCACAGG CTCCACATACTCATCTTTCAATGTCACAGCACGTTGTCTCCTGTCTGCCG TCGCTGCTGTCAGGACAGTTTCTCGGCTCACCCAGGACTCTTGCAGAAGG GCGTCGATACAGGTAGCTCGGAGAAAATTGAGAAGCTGAGGAAGCTCGTT TCGATGCTGGGGGGGTGGGAAAGAGGGAGGGGAGGGAGGGGAGGGAGGGG AGGGAGGGGTGTGGGGTGACGGGGAGGGAGGGGTGTGGGGTGACGGGGAG GGAGGGTGAAGGGCAACGGTGGGACGGTATAGCAGCTATCATGACGCACC GAGACGGCTTGAATGACCGCGCAGCGCTCGTCATGACCGGCGTTGTCCAT CGCGTTATACACGATCTGGAGAGGCAGAGGACAAAGGGGTGGAGAGGTCG TGTACAGCAAGGGCTTCGAAAGGGACAGAGCTGCGTCGGTTTTGGACGGA AATTTCCCCCTGCTTGTGCCAATATTTTGTCTTTGTGTAGAGGATGTGCA GTGGAGGTGATTTAGTCGACATGAGTTGTGTGAGTTGTTGCAATCGCTGA GACTGCCTCCCCGCACCTCTGCGGCATCCCCGCGGTAGCAGAGGAGTCGT TCTTCGTTTTTCGTTACTACCTTCTTAATCCCCATCCAACCTCCCTTCTT ACCTCGCGCTTGAGCACAGTCACAGCAATACCTGCGCCAGTGTACCATCG GCAAGTCATGAAGTTCCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTT TGAATGGTAATTCTTCCTCCCTTCCTGCCTCCATCCCTCACTCCCTTCCT CACTCTCCCTCCCCTTTCCCCCACAACACGACACAAGGCGTGGCACAATG CTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGTCAGAGCGCTCGA TCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTCCGGGTCTTCAGT GAGATTGAGCAGGTGAGGCGAGGCGGGGGGGTAAGAGAGGGAAGGGTGTG AATGATGAGGGGAGTTGTGATGGGAAGAGAAGCAAGAGTGGCGTACAAAA AGAGTAAGCTGCAACGCTATTGCATTGGTCTCGGTGCTATGTGCATGTAC GTAGCATCAAATGTGCCTATTTGCCCTCCCTCCCCCTCCCCCCTCCCCTC CCTTCCTTTGTCACTTCCCCCCTCCCTCCCTCCCTCCGTTTCAAACAGGA GAAAATCTTCAGGGACTACCGCATCGAGAGCCTGGCTAACAACTCCATCC TCTTCGAGATCGGCCTGTCCAACCTTATCAAGTCCTTCACCTCTGCCAAA ACCGCGCAGTTTGTGAAGCTGAAGCTGGCAAAAAGGGGCGGACAGCCGTG CATATGCCTAGAAGCCAGGGTAGGTTGGTCTGATTTCTCCCTGCCTGCCT CCCTCCCTCTTCCCGTTCCTCCCAGTATCCTTCGCTCCTATGAAACGCGC TAACGGCCAAGACCAAAGCCGACGAGGAAGTGATTGAACGCCAGCCCCTG ACTCACCTCGCATCTGCCTGGAATCACGAGTCTGATTGAGGGAGGGGGAG GGCAGAAAAGCTGCTTTCGATGCGAATTTTTTTTCACAACCTTCTTCCCT CCCTCCCCCCCTCCCTCTCTCCTCCCCCCCTCCAGGCGCTGGACATTGAG CTCCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGGACATCCAGTA CTACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGTTGCCCT ACAACCGCTCCATGCGCACAGTGCTCGAGGTGAGGGAATGAAGGAGGCTA GGGGGGAGGAAGGGAGGGGGGAAGGGGGTAAGGAAAGTGTGGGAAGGCAA CGAAGGACGGGCACCCACTTATTCGCCTCCCCTCCCCCTTCCTCTCTCTC TCACTCTTTCTCTCCATCCCTTCCCCCTTCACGTCAGCGGTTCAAGAGCA TGGACCGCTTTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGCTG CATGTGCAGAATGACAGGTGTCATGTGCAGACGTTTTATGGGTAACAAAG GCAACGCCCGCCCGCCCCACTCCCTCGCTCCCTCCATCTCTTTTCCTTTT CGTTTGCAAATGTTACGCCAATAATCATAAAACGGGGAGGAATGGAGGGA GAAGGGAAGAAGGGAGGGAGGAAGGGAGCGAAGGAAGAGTGCTCCGGTTG CGGGTGTAGAAAGATGTTATCGGAGGTGGAGGGTATAGTGGTTTCCTTAC TCACCTTCTCTACCTCCCCACCTCCCCCCTCCTTCTGTTCCTCACCAGCA ACTTGATACCGCGCTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGG GAAGATGGAGGGACAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACG CAGGCTGCTGGCGGCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTG CACTCTGCTGTCTGATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTG GGTGGACATGCGGGCTCTTTGACATACTACCTGCCTATCTATCTTGTGTA GGAGTAGGAGGCGGAGGTGGAAGAGGAAGAGGAGGAGGGGGAGAAGAAGA CAAAAAAGGAGGAGAAGGAGGAGATGGATGGTGACTTGTGTCAGTTAGAG
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Coding sequence (CDS) from alignment at scaffold_26:184093..186892+

>mRNA_8554 ID=mRNA_8554|Name=jgi.p|Nanoce1779_2|603079|organism=Nannochloropsis oceanica|type=CDS|length=5076bp|location=Sequence derived from alignment at scaffold_26:184093..186892+ (Nannochloropsis oceanica)
ATGAAGTTCCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGG
CGTGGCACAATGCTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGT
CAGAGCGCTCGATCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTC
CGGGTCTTCAGTGAGATTGAGCAGGAGAAAATCTTCAGGGACTACCGCAT
CGAGAGCCTGGCTAACAACTCCATCCTCTTCGAGATCGGCCTGTCCAACC
TTATCAAGTCCTTCACCTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAG
CTGGCAAAAAGGGGCGGACAGCCGTGCATATGCCTAGAAGCCAGGGCGCT
GGACATTGAGCTCCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGG
ACATCCAGTACTACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTG
GAGTTGCCCTACAACCGCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAG
CATGGACCGCTTTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGC
TGCATGTGCAGAATGACAGGTGTCATGTGCAGACGTTTTATGGCAACTTG
ATACCGCGCTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGA
TGGAGGGACAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGC
TGCTGGCGGCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTC
TGCTGTCTGATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGG
ACATGCGGGCTCTTTGACATACTACCTGCCTATCTATCTTGTGTAGATGA
AGTTCCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGGCGTG
GCACAATGCTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGTCAGA
GCGCTCGATCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTCCGGG
TCTTCAGTGAGATTGAGCAGGAGAAAATCTTCAGGGACTACCGCATCGAG
AGCCTGGCTAACAACTCCATCCTCTTCGAGATCGGCCTGTCCAACCTTAT
CAAGTCCTTCACCTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAGCTGG
CAAAAAGGGGCGGACAGCCGTGCATATGCCTAGAAGCCAGGGCGCTGGAC
ATTGAGCTCCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGGACAT
CCAGTACTACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGT
TGCCCTACAACCGCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAGCATG
GACCGCTTTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGCTGCA
TGTGCAGAATGACAGGTGTCATGTGCAGACGTTTTATGGCAACTTGATAC
CGCGCTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGATGGA
GGGACAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGCTGCT
GGCGGCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTCTGCT
GTCTGATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGGACAT
GCGGGCTCTTTGACATACTACCTGCCTATCTATCTTGTGTAGATGAAGTT
CCGCGCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGGCGTGGCAC
AATGCTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGTCAGAGCGC
TCGATCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTCCGGGTCTT
CAGTGAGATTGAGCAGGAGAAAATCTTCAGGGACTACCGCATCGAGAGCC
TGGCTAACAACTCCATCCTCTTCGAGATCGGCCTGTCCAACCTTATCAAG
TCCTTCACCTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAGCTGGCAAA
AAGGGGCGGACAGCCGTGCATATGCCTAGAAGCCAGGGCGCTGGACATTG
AGCTCCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGGACATCCAG
TACTACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGTTGCC
CTACAACCGCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAGCATGGACC
GCTTTTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGCTGCATGTG
CAGAATGACAGGTGTCATGTGCAGACGTTTTATGGCAACTTGATACCGCG
CTATTCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGATGGAGGGA
CAGGTTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGCTGCTGGCG
GCCTTGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTCTGCTGTCT
GATAGAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGGACATGCGG
GCTCTTTGACATACTACCTGCCTATCTATCTTGTGTAGATGAAGTTCCGC
GCGGGCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGGCGTGGCACAATG
CTTCGAAAAAATTGGCCCATCGTGCCTCATCTACTTGTCAGAGCGCTCGA
TCAAGTTCGCGTCACCTAAACTGGGCAGTGACGATGTCCGGGTCTTCAGT
GAGATTGAGCAGGAGAAAATCTTCAGGGACTACCGCATCGAGAGCCTGGC
TAACAACTCCATCCTCTTCGAGATCGGCCTGTCCAACCTTATCAAGTCCT
TCACCTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAGCTGGCAAAAAGG
GGCGGACAGCCGTGCATATGCCTAGAAGCCAGGGCGCTGGACATTGAGCT
CCTCCACGAAATCCCTATCCGTGTCATGCGCGCCGCGGACATCCAGTACT
ACGCGCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGTTGCCCTAC
AACCGCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAGCATGGACCGCTT
TTGTTTCGTCGACGGGGACATGGGCGGATCTCTCAGGCTGCATGTGCAGA
ATGACAGGTGTCATGTGCAGACGTTTTATGGCAACTTGATACCGCGCTAT
TCGGAAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGATGGAGGGACAGG
TTTTCCCTCCTGTTCCATCAAGCTGGACACACGCAGGCTGCTGGCGGCCT
TGTACTTCTTGGGAGGGATCAAGTACGAGACTGCACTCTGCTGTCTGATA
GAGGCGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGGACATGCGGGCTC
TTTGACATACTACCTGCCTATCTATCTTGTGTAGATGAAGTTCCGCGCGG
GCCTCGTGGCTAAGGACCTCAGCCTTTTGAATGGCGTGGCACAATGCTTC
GAAAAAATTGGCCCATCGTGCCTCATCTACTTGTCAGAGCGCTCGATCAA
GTTCGCGTCACCTAAACTGGGCAGTGACGATGTCCGGGTCTTCAGTGAGA
TTGAGCAGGAGAAAATCTTCAGGGACTACCGCATCGAGAGCCTGGCTAAC
AACTCCATCCTCTTCGAGATCGGCCTGTCCAACCTTATCAAGTCCTTCAC
CTCTGCCAAAACCGCGCAGTTTGTGAAGCTGAAGCTGGCAAAAAGGGGCG
GACAGCCGTGCATATGCCTAGAAGCCAGGGCGCTGGACATTGAGCTCCTC
CACGAAATCCCTATCCGTGTCATGCGCGCCGCGGACATCCAGTACTACGC
GCCTCCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGTTGCCCTACAACC
GCTCCATGCGCACAGTGCTCGAGCGGTTCAAGAGCATGGACCGCTTTTGT
TTCGTCGACGGGGACATGGGCGGATCTCTCAGGCTGCATGTGCAGAATGA
CAGGTGTCATGTGCAGACGTTTTATGGCAACTTGATACCGCGCTATTCGG
AAGGTATGGCCGAGGACGAGGAGGGAAGGGAAGATGGAGGGACAGGTTTT
CCCTCCTGTTCCATCAAGCTGGACACACGCAGGCTGCTGGCGGCCTTGTA
CTTCTTGGGAGGGATCAAGTACGAGACTGCACTCTGCTGTCTGATAGAGG
CGAGTTGCTTGGTGCTGCATGTGGCGTTGGGTGGACATGCGGGCTCTTTG
ACATACTACCTGCCTATCTATCTTGTGTAGATGAAGTTCCGCGCGGGCCT
CGTGGCTAAGGACCTCAGCCTTTTGAATGGCGTGGCACAATGCTTCGAAA
AAATTGGCCCATCGTGCCTCATCTACTTGTCAGAGCGCTCGATCAAGTTC
GCGTCACCTAAACTGGGCAGTGACGATGTCCGGGTCTTCAGTGAGATTGA
GCAGGAGAAAATCTTCAGGGACTACCGCATCGAGAGCCTGGCTAACAACT
CCATCCTCTTCGAGATCGGCCTGTCCAACCTTATCAAGTCCTTCACCTCT
GCCAAAACCGCGCAGTTTGTGAAGCTGAAGCTGGCAAAAAGGGGCGGACA
GCCGTGCATATGCCTAGAAGCCAGGGCGCTGGACATTGAGCTCCTCCACG
AAATCCCTATCCGTGTCATGCGCGCCGCGGACATCCAGTACTACGCGCCT
CCCGACGTGCCCGTGCCGCGGGTGCAGCTGGAGTTGCCCTACAACCGCTC
CATGCGCACAGTGCTCGAGCGGTTCAAGAGCATGGACCGCTTTTGTTTCG
TCGACGGGGACATGGGCGGATCTCTCAGGCTGCATGTGCAGAATGACAGG
TGTCATGTGCAGACGTTTTATGGCAACTTGATACCGCGCTATTCGGAAGG
TATGGCCGAGGACGAGGAGGGAAGGGAAGATGGAGGGACAGGTTTTCCCT
CCTGTTCCATCAAGCTGGACACACGCAGGCTGCTGGCGGCCTTGTACTTC
TTGGGAGGGATCAAGTACGAGACTGCACTCTGCTGTCTGATAGAGGCGAG
TTGCTTGGTGCTGCATGTGGCGTTGGGTGGACATGCGGGCTCTTTGACAT
ACTACCTGCCTATCTATCTTGTGTAG
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Synonyms
Publications