jgi.p|Nanoce1779_2|568636, mRNA_8552 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568636
Unique Name	mRNA_8552
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	855
Alignment location	scaffold_26:180726..182893 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568722
Track	FilteredModels2
ProteinId	568636

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:180726..182893 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568636	gene_8552	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568636	mRNA_8552-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8552	CDS_8552	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:180726..182893+
coding sequence from alignment at scaffold_26:180726..182893+

mRNA sequence

>mRNA_8552 ID=mRNA_8552|Name=jgi.p|Nanoce1779_2|568636|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAGCAGTT
CCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGATGGGT
TGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCAGCAGC
AGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTATTGGC
AGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGATCAAGA
AGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAAGTCTT
CGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAATCCCT
TTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCCCAATT
TCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGAACATT
GGGGTCTTCTATCCCTTTTGTATTATACATATGTTGACACATCATTGGGA
GCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGACGAGGCCAGAA
GATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAATGGCCTCCGC
CGCCGTGCTATTGCGAAAAACAGGATGATGAAGCGTGTACTGCTGCTAGA
GCAGCAGCAGCGGCAGAAGGATTTGAAAGAGGGGATAAAGGAAGGGAAGG
AGGAGAAGGAGGAGAAGGAGGAGAAGGAGAAGAAGGAGGAGGAGGGAGAG
TTGGTATTGCGGAGTGACGATAAGACGATGCCGTCTTTGCATGAGATGAA
CTTGACGGAGTCTCCCGCCCTCCTCGCCGCTGCACCTCTGCCACCTATGA
TGTGA

protein sequence of jgi.p|Nanoce1779_2|568636

>mRNA_8552-protein ID=mRNA_8552-protein|Name=jgi.p|Nanoce1779_2|568636|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MRPVQSTPPADEGQQQFRSVLLPSLAAEVEEDGLLVAGMEGKTDSVSSSS
SSSGLELLTPAEMDLLAAWQAGGSTRRKKRRIKKKNRLLQENYTHLLRSL
RDEFIFKGFGLTLTKSLLRRDIGLGFGIPLTPNFMAWERIDFLPTINSNI
GVFYPFCIIHMLTHHWEQLEARYRLHALVDEARRLNEAAEALLTKLNGLR
RRAIAKNRMMKRVLLLEQQQRQKDLKEGIKEGKEEKEEKEEKEKKEEEGE
LVLRSDDKTMPSLHEMNLTESPALLAAAPLPPMM*

mRNA from alignment at scaffold_26:180726..182893+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8552 ID=mRNA_8552|Name=jgi.p|Nanoce1779_2|568636|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at scaffold_26:180726..182893+ (Nannochloropsis oceanica)
ATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAGCAGTT
CCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGATGGGT
TGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCAGCAGC
AGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTATTGGC
AGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGATCAAGA
AGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAAGTCTT
CGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAATCCCT
TTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCCCAATT
TCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGAACATT
GGGGTCTTCTATCCCTTTTGTGTGAGTGGGTGGATCAGCATCAGTTACCC
CGCCGACCTAGTGTTGCGGTTCTTGGCCTTCTTCTTGCCCGTGTTGCCGG
TGTCGCATCAGAGCGGTTTTGTCACGAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGAAGTAGTAGTAGTAGCAGTAGCAGCAGCAGCAGTAGCAG
CAGCAGCAGTAGCAGCAATAGCGGCAGCGGCAGCTTATCCTCCTTCTCAT
TGATTTCGTCGATGCCTTCACCAGCACCAGCACCAGCACCAGCACCAGCA
GCAGCAGCAGCAGCACCAGCAGCAGCAGCCCCTCGATACGACGCTCCCTC
CTCCGATCCCGACTTGATTCGCCAGCAACGCGACATAACCGGAACAACAT
TACCAGCAGCAGCACCACCACCAGTATCAGCAGGAGCACCAGTATCAGCA
CCACAACCCACAGGAGGTACAAAACCAACAAGCCGCTCTCGGCGCCTTAA
ACGTGCCAGCGTCGAACGCGTTGGATTCAGTCTCTCCTGCCGCTACACTC
CTGCACACGGTTTCTTCGTCCGTGTCACCCCCTGGTTATTCTTCCTCCCC
GGCCTACAGATCATTTCCCGTCTCCTCACTCAGATTATACATATGTTGAC
ACATCATTGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGG
ACGAGGCCAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTG
AATGGTACGGTCAGCAGCAAAAGCAGCGTCGGCAGTTTAAGTAGTTGTAG
CACCAACAGCAGAAGCAGCAGCGGCAGGATTAAAAAACATGAGAAGACTT
TAACGGCTCGACGCTTCAAGAAATGGGCCTCAAAAAAACACGGCGGCATC
GGGTACAGCATGTCTCTCTTTCGTGGAGGCTTAGGTGCATCCGTCCTCCT
ATCCATCTCTCCCTTCTTCTTAGGCCTCCGCCGCCGTGCTATTGCGAAAA
ACAGGATGATGAAGCGTGTACTGCTGCTAGAGCAGCAGCAGCGGCAGAAG
GATTTGAAAGAGGGGATAAAGGAAGGGAAGGAGGAGAAGGAGGAGAAGGA
GGAGAAGGAGAAGAAGGAGGAGGAGGGAGAGTTGGTATTGCGGAGTGACG
ATAAGACGATGCCGTCTTTGCATGAGATGAACTTGACGGAGTCTCCCGCC
CTCCTCGCCGCTGCACCTCTGCCACCTATGATGGTGACCACCCCTTCTGC
TCCTCCTCCTGTTATTGCTACTACTGCTTTTGCCCCTGCATCTGGTGCTG
CCCCTCCATATGCTGATACCTCTAAGGACCGGATCAAGGAGGCAGCGGTA
GAGAGAAAGGAGGAAGGGGAGGAGGGGAAGGGAATAGATGTTAACAGTGT
GGCGGTTCCTATCGGGGGCGGCCCAGAAGACGAGCTCCCTATTGACGTTG
AGCACTCTAACGAGAACGTCGACGATAGCAGCAGCACCAACAGTGGTGGT
AGCAGCAGTAGCAGTATCACCAGCAGCAGTACACAAGAGGGCGGCGTGAA
CATTTCTGCCGCAGGTCCCGGGTCCTCGAGCGGGGAGGGCAGGGGGGAGG
ATGGGGGGGAGGGCGAGGGAGAGAAAGGCGCTGCCTTGAGTTCAATGGGG
GAATGAGGAGCATGTAGTCTATAGCCGATAGATACTGACAGGATGGGGTC
CACATTTGTAAATAGTGA

Coding sequence (CDS) from alignment at scaffold_26:180726..182893+

>mRNA_8552 ID=mRNA_8552|Name=jgi.p|Nanoce1779_2|568636|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_26:180726..182893+ (Nannochloropsis oceanica)
ATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAGCAGTT
CCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGATGGGT
TGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCAGCAGC
AGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTATTGGC
AGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGATCAAGA
AGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAAGTCTT
CGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAATCCCT
TTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCCCAATT
TCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGAACATT
GGGGTCTTCTATCCCTTTTGTATTATACATATGTTGACACATCATTGGGA
GCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGACGAGGCCAGAA
GATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAATGGCCTCCGC
CGCCGTGCTATTGCGAAAAACAGGATGATGAAGCGTGTACTGCTGCTAGA
GCAGCAGCAGCGGCAGAAGGATTTGAAAGAGGGGATAAAGGAAGGGAAGG
AGGAGAAGGAGGAGAAGGAGGAGAAGGAGAAGAAGGAGGAGGAGGGAGAG
TTGGTATTGCGGAGTGACGATAAGACGATGCCGTCTTTGCATGAGATGAA
CTTGACGGAGTCTCCCGCCCTCCTCGCCGCTGCACCTCTGCCACCTATGA
TGTGAATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGACAGCAG
CAGTTCCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAAGAAGA
TGGGTTGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAGTAGCA
GCAGCAGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGGATCTA
TTGGCAGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGGAGGAT
CAAGAAGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCTGAGAA
GTCTTCGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAACCAAA
TCCCTTTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTAACGCC
CAATTTCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAATTCGA
ACATTGGGGTCTTCTATCCCTTTTGTATTATACATATGTTGACACATCAT
TGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGACGAGGC
CAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAATGGCC
TCCGCCGCCGTGCTATTGCGAAAAACAGGATGATGAAGCGTGTACTGCTG
CTAGAGCAGCAGCAGCGGCAGAAGGATTTGAAAGAGGGGATAAAGGAAGG
GAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGAAGAAGGAGGAGGAGG
GAGAGTTGGTATTGCGGAGTGACGATAAGACGATGCCGTCTTTGCATGAG
ATGAACTTGACGGAGTCTCCCGCCCTCCTCGCCGCTGCACCTCTGCCACC
TATGATGTGAATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGAAGGAC
AGCAGCAGTTCCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGGTGGAA
GAAGATGGGTTGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCCGTCAG
TAGCAGCAGCAGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGAAATGG
ATCTATTGGCAGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGAAGAGG
AGGATCAAGAAGAAGAATCGCTTGCTCCAAGAAAACTACACTCACCTGCT
GAGAAGTCTTCGGGATGAGTTCATCTTTAAGGGGTTTGGACTCACTTTAA
CCAAATCCCTTTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTCCCCTA
ACGCCCAATTTCATGGCTTGGGAACGGATTGATTTCCTTCCGACGATCAA
TTCGAACATTGGGGTCTTCTATCCCTTTTGTATTATACATATGTTGACAC
ATCATTGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGGTGGAC
GAGGCCAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAATTGAA
TGGCCTCCGCCGCCGTGCTATTGCGAAAAACAGGATGATGAAGCGTGTAC
TGCTGCTAGAGCAGCAGCAGCGGCAGAAGGATTTGAAAGAGGGGATAAAG
GAAGGGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGAAGAAGGAGGA
GGAGGGAGAGTTGGTATTGCGGAGTGACGATAAGACGATGCCGTCTTTGC
ATGAGATGAACTTGACGGAGTCTCCCGCCCTCCTCGCCGCTGCACCTCTG
CCACCTATGATGTGAATGCGGCCCGTGCAAAGCACGCCTCCTGCCGACGA
AGGACAGCAGCAGTTCCGCAGTGTTTTATTGCCGTCGCTGGCCGCGGAGG
TGGAAGAAGATGGGTTGTTGGTAGCCGGAATGGAGGGAAAGACGGACTCC
GTCAGTAGCAGCAGCAGCAGCAGCGGCCTGGAGCTGTTGACACCCGCAGA
AATGGATCTATTGGCAGCTTGGCAGGCCGGTGGTTCTACCCGGAGGAAGA
AGAGGAGGATCAAGAAGAAGAATCGCTTGCTCCAAGAAAACTACACTCAC
CTGCTGAGAAGTCTTCGGGATGAGTTCATCTTTAAGGGGTTTGGACTCAC
TTTAACCAAATCCCTTTTGAGAAGGGATATTGGCCTTGGCTTTGGAATTC
CCCTAACGCCCAATTTCATGGCTTGGGAACGGATTGATTTCCTTCCGACG
ATCAATTCGAACATTGGGGTCTTCTATCCCTTTTGTATTATACATATGTT
GACACATCATTGGGAGCAGCTCGAGGCTCGATATCGCCTACATGCCCTGG
TGGACGAGGCCAGAAGATTGAACGAGGCTGCAGAGGCCTTGCTCACGAAA
TTGAATGGCCTCCGCCGCCGTGCTATTGCGAAAAACAGGATGATGAAGCG
TGTACTGCTGCTAGAGCAGCAGCAGCGGCAGAAGGATTTGAAAGAGGGGA
TAAAGGAAGGGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGAAGAAG
GAGGAGGAGGGAGAGTTGGTATTGCGGAGTGACGATAAGACGATGCCGTC
TTTGCATGAGATGAACTTGACGGAGTCTCCCGCCCTCCTCGCCGCTGCAC
CTCTGCCACCTATGATGTGA

Synonyms

Publications