jgi.p|Nanoce1779_2|603069, mRNA_8551 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603069
Unique NamemRNA_8551
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1097
Alignment locationscaffold_26:178821..179917 -

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Properties
Property NameValue
TranscriptId603155
TrackFilteredModels2
ProteinId603069
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:178821..179917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603069gene_8551Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603069mRNA_8551-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8551CDS_8551Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8551 ID=mRNA_8551|Name=jgi.p|Nanoce1779_2|603069|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp
ACAGTTGGGACCTTTCACCAATGCCAGTAGCGGGACACCCAGTAGGAGCA
GCAATAGAGGGACGATAACGAAGCGGTGCCTCACTACTATGTGCAAGGCT
TTGGAGAAGTCCACCCTCCTCCTTCTCGACATCATTGACAGCCTAGCTGG
CCTCCTGCTTTTTATCTATGGGGGCTTTCTGTCCAAGCAGCTAGGCCCCA
AGAGTGCGGACGGGGACGATACATACTCCTGGGTCTGCATCCCCGTCCTC
TGCCTCGCGGGGTGGCTGCTGCTGGTTGCCATCCTCTCTTTCGTCGGGTC
AAATTTAGAGCGCATGCGTTGCTTGCTGCGTCTAAGCTCGGTCCTTGGCC
TCGTTGGTGGTATTATAGAACTCCTACTGCTGGTTCTTTTAGGTATATTG
AAAGGCAACATCAAGGCATGGATGCGGGAACACAAAGCAGAGCTGGGGTT
AAGCGATGATGACTTCTCAACCCTCGATGGCCTCTATGTCGCTTTTCTGT
GGGGCTTGGCTGCGTTGTGCCTGCTGGAAATAGTGCGCTACCATGTCTCT
AAACACCTTCGGAAGCAGATTCATGGTGATCACCTTGATTATCAAACCCG
TCTACTTGAGGCGAGAGAGAAAGAGGCGAGGGGGAGGGCAACTGACCCTG
CCTTGCGACGGGAGGAGGCAAAACAGAAATTCAAGACGAAACGTGCAGCG
TATATAACGAAGCATTCGTGGGGAGGAGGTAGCGGAAGAGGATGTAAGGG
AGGGGAAAAAGAGGAGGCGGGGACTCATACAGTGGTGTAATGCGAGAATA
ACGGAAAGGTGCAAAAGTGGAATGATGTCAGACACGACCAGACTAAAAGT
AGCGGCAAGACGGAGGCGAGGAAGCAAGCGGCACCATCAACATACTGTAA
ATGTACAAAAACAGAGAAAGGAGAAAATATAGTGGAGAAATTAGCCAAAT
CACCCCCCATAGAGGGGAAGAAACAAAACTACGTAATAAATGTGAATCAT
CACCATCATCATCACCAGTCACAAATCACCCCCCATAGAGGGGAAGAAAC
AAAACTACGTAATAAATGTGAATCAAATCATCACCATCATCATCACC
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protein sequence of jgi.p|Nanoce1779_2|603069

>mRNA_8551-protein ID=mRNA_8551-protein|Name=jgi.p|Nanoce1779_2|603069|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MCKALEKSTLLLLDIIDSLAGLLLFIYGGFLSKQLGPKSADGDDTYSWVC
IPVLCLAGWLLLVAILSFVGSNLERMRCLLRLSSVLGLVGGIIELLLLVL
LGILKGNIKAWMREHKAELGLSDDDFSTLDGLYVAFLWGLAALCLLEIVR
YHVSKHLRKQIHGDHLDYQTRLLEAREKEARGRATDPALRREEAKQKFKT
KRAAYITKHSWGGGSGRGCKGGEKEEAGTHTVV*
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mRNA from alignment at scaffold_26:178821..179917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8551 ID=mRNA_8551|Name=jgi.p|Nanoce1779_2|603069|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp|location=Sequence derived from alignment at scaffold_26:178821..179917- (Nannochloropsis oceanica)
ACAGTTGGGACCTTTCACCAATGCCAGTAGCGGGACACCCAGTAGGAGCA
GCAATAGAGGGACGATAACGAAGCGGTGCCTCACTACTATGTGCAAGGCT
TTGGAGAAGTCCACCCTCCTCCTTCTCGACATCATTGACAGCCTAGCTGG
CCTCCTGCTTTTTATCTATGGGGGCTTTCTGTCCAAGCAGCTAGGCCCCA
AGAGTGCGGACGGGGACGATACATACTCCTGGGTCTGCATCCCCGTCCTC
TGCCTCGCGGGGTGGCTGCTGCTGGTTGCCATCCTCTCTTTCGTCGGGTC
AAATTTAGAGCGCATGCGTTGCTTGCTGCGTCTAAGCTCGGTCCTTGGCC
TCGTTGGTGGTATTATAGAACTCCTACTGCTGGTTCTTTTAGGTATATTG
AAAGGCAACATCAAGGCATGGATGCGGGAACACAAAGCAGAGCTGGGGTT
AAGCGATGATGACTTCTCAACCCTCGATGGCCTCTATGTCGCTTTTCTGT
GGGGCTTGGCTGCGTTGTGCCTGCTGGAAATAGTGCGCTACCATGTCTCT
AAACACCTTCGGAAGCAGATTCATGGTGATCACCTTGATTATCAAACCCG
TCTACTTGAGGCGAGAGAGAAAGAGGCGAGGGGGAGGGCAACTGACCCTG
CCTTGCGACGGGAGGAGGCAAAACAGAAATTCAAGACGAAACGTGCAGCG
TATATAACGAAGCATTCGTGGGGAGGAGGTAGCGGAAGAGGATGTAAGGG
AGGGGAAAAAGAGGAGGCGGGGACTCATACAGTGGTGTAATGCGAGAATA
ACGGAAAGGTGCAAAAGTGGAATGATGTCAGACACGACCAGACTAAAAGT
AGCGGCAAGACGGAGGCGAGGAAGCAAGCGGCACCATCAACATACTGTAA
ATGTACAAAAACAGAGAAAGGAGAAAATATAGTGGAGAAATTAGCCAAAT
CACCCCCCATAGAGGGGAAGAAACAAAACTACGTAATAAATGTGAATCAT
CACCATCATCATCACCAGTCACAAATCACCCCCCATAGAGGGGAAGAAAC
AAAACTACGTAATAAATGTGAATCAAATCATCACCATCATCATCACC
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Coding sequence (CDS) from alignment at scaffold_26:178821..179917-

>mRNA_8551 ID=mRNA_8551|Name=jgi.p|Nanoce1779_2|603069|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_26:178821..179917- (Nannochloropsis oceanica)
ATGTGCAAGGCTTTGGAGAAGTCCACCCTCCTCCTTCTCGACATCATTGA
CAGCCTAGCTGGCCTCCTGCTTTTTATCTATGGGGGCTTTCTGTCCAAGC
AGCTAGGCCCCAAGAGTGCGGACGGGGACGATACATACTCCTGGGTCTGC
ATCCCCGTCCTCTGCCTCGCGGGGTGGCTGCTGCTGGTTGCCATCCTCTC
TTTCGTCGGGTCAAATTTAGAGCGCATGCGTTGCTTGCTGCGTCTAAGCT
CGGTCCTTGGCCTCGTTGGTGGTATTATAGAACTCCTACTGCTGGTTCTT
TTAGGTATATTGAAAGGCAACATCAAGGCATGGATGCGGGAACACAAAGC
AGAGCTGGGGTTAAGCGATGATGACTTCTCAACCCTCGATGGCCTCTATG
TCGCTTTTCTGTGGGGCTTGGCTGCGTTGTGCCTGCTGGAAATAGTGCGC
TACCATGTCTCTAAACACCTTCGGAAGCAGATTCATGGTGATCACCTTGA
TTATCAAACCCGTCTACTTGAGGCGAGAGAGAAAGAGGCGAGGGGGAGGG
CAACTGACCCTGCCTTGCGACGGGAGGAGGCAAAACAGAAATTCAAGACG
AAACGTGCAGCGTATATAACGAAGCATTCGTGGGGAGGAGGTAGCGGAAG
AGGATGTAAGGGAGGGGAAAAAGAGGAGGCGGGGACTCATACAGTGGTGT
AA
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Synonyms
Publications