jgi.p|Nanoce1779_2|574385, mRNA_855 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574385
Unique NamemRNA_855
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1471
Alignment locationscaffold_2:591148..593022 -

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Properties
Property NameValue
TranscriptId574471
TrackFilteredModels2
ProteinId574385
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:591148..593022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574385gene_855Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574385mRNA_855-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_855CDS_855Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_855 ID=mRNA_855|Name=jgi.p|Nanoce1779_2|574385|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp
TGGACCTACGCGTTGTGCTCTTCCGCCTTCTTTTTCACGTCTTCCAAATA
GTCTCCTCCCTTCACACCCACCCGACCAAACATTCAGCCACACAAGCAGC
CCCGCTCAAGGCACACGGATAACTTTTCGGCGTCACAGAAGTGTGGAGGC
CGTTGCCACTGGCAAGGCGCGTGGGCTGGTCAAGCGCCAGGAGGGGAAGG
AAACAACCGCCGCCGAGTCGTCTTCACTTTTCCTACGCCATCGCTGCCCC
GGTGCGCCTGCCAATCCAAGCGCAGGGGAACCAAATCGGCCTGTGTAGGC
CTGGATATTCTACGACGGCATTGTCGTGCTGTGCTTGGAACGCGTCAGTG
ATGGCTGGCCTGACTGCCTCGGATGAACGGGAGAAGAAGGACGAAAGAGG
GAGCTGATTCCTCCCCCTTTCCATCCTTCCTCCCACGACTCTTCATGCAC
ATGCTACTGCCACACACAATCACAATACCCCACTCAAACACACACACAGT
TAAGACAACAAGCAAACTTTCCTCCACCTTTCAAGATGGATTCCCGGGAC
TCCTTGGTGTATAAAGCGAAGCTTGCCGAGCAAGCCGAGCGCTTCGACGA
GATGGTTGATCATATGAAGGCTGTGGCCCAGCAGCCCCAAGAGCTCTCCG
TGGAGGAGCGCAACCTTCTCTCGGTCGCCTACAAGAATGTGATTGGCTCC
CGTCGTGCGTCGTGGCGTGTCATTTCCTCCATCGAGCAGAAAGGGGAGCA
GGAGCGCCTGCCTCTCATCAGGGAGTACAAGGCCAAAATTGAGGACGAGC
TGCTGGAGATCTGCAACGACATCTTGAACATAATAGAGACGGAACTCATC
CCCAACTCGACGTCGGAGGAAGGCAAGGTGTTTTACTTCAAGATGAAGGG
CGACTACCACCGGTACTTGGCCGAGTTCCAGGTGGGTGACAAACGCCGGG
AGTCCTCTGATGCCGCCTTGTCCGCGTACAAGTGTGCCACAGACATTGCC
GAGCATGACCTGCCTCCTACCCATCCCATCCGGCTGGGGCTAGCCCTGAA
CTTCTCCGTCTTCTTCTACGAGATCTACAACAGCCCTGACCGTGCCTGCG
CCCTGGCCAAGAAGGCATTCGACGATGCCATTGCGGAGCTGGACACGCTG
TCGGAGGAGTCGTACAAGGACAGCACGCTCATCATGCAGCTCTTGCGTGA
CAACCTGACGTTGTGGACGTCCGACCAGAACGAGGCGGACGAGGCGGGCG
CCAACAACGAGGACGGGAACCGCGCGGAGGACCTCTAATCCGAGCATCTG
TAGAGGGAGCCAGGGAAGGATTGGGGAAGGAATGTAGGAAGGGAGAGGAA
AGGCTGCTTGGAGGAAGTGGCGTGACGCCGTTTGAGGGAGGGATGGAGGG
AGGGAGGGAGGGGTGGTTTCAGACACGGTGTCGTCTGCACAGAAAATTGA
AAGGGATGGTGGCGGATGAAG
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protein sequence of jgi.p|Nanoce1779_2|574385

>mRNA_855-protein ID=mRNA_855-protein|Name=jgi.p|Nanoce1779_2|574385|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MDSRDSLVYKAKLAEQAERFDEMVDHMKAVAQQPQELSVEERNLLSVAYK
NVIGSRRASWRVISSIEQKGEQERLPLIREYKAKIEDELLEICNDILNII
ETELIPNSTSEEGKVFYFKMKGDYHRYLAEFQVGDKRRESSDAALSAYKC
ATDIAEHDLPPTHPIRLGLALNFSVFFYEIYNSPDRACALAKKAFDDAIA
ELDTLSEESYKDSTLIMQLLRDNLTLWTSDQNEADEAGANNEDGNRAEDL
*
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mRNA from alignment at scaffold_2:591148..593022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_855 ID=mRNA_855|Name=jgi.p|Nanoce1779_2|574385|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at scaffold_2:591148..593022- (Nannochloropsis oceanica)
TGGACCTACGCGTTGTGCTCTTCCGCCTTCTTTTTCACGTCTTCCAAATA
GTCTCCTCCCTTCACACCCACCCGACCAAACATTCAGCCACACAAGCAGC
CCCGCTCAAGGCACACGGATAACTTTTCGGCGTCACAGAAGTGTGGAGGC
CGTTGCCACTGGCAAGGCGCGTGGGCTGGTCAAGCGCCAGGAGGGGAAGG
AAACAACCGCCGCCGAGTCGTCTTCACTTTTCCTACGCCATCGCTGCCCC
GGTGCGCCTGCCAATCCAAGCGCAGGGGAACCAAATCGGCCTGTGTAGGC
CTGGATATTCTACGACGGCATTGTCGTGCTGTGCTTGGAACGCGTCAGTG
ATGGCTGGCCTGACTGCCTCGGATGAACGGGAGAAGAAGGACGAAAGAGG
GAGCTGATTCCTCCCCCTTTCCATCCTTCCTCCCACGACTCTTCATGCAC
ATGCTACTGCCACACACAATCACAATACCCCACTCAAACACACACACAGT
TAAGACAACAAGCAAACTTTCCTCCACCTTTCAAGATGGATTCCCGGGAC
TCCTTGGTGTATAAAGCGAAGCTTGCCGAGCAAGCCGAGCGCTTCGACGA
GATGGTTGATCATATGAAGGCTGTGGCCCAGCAGCCCCAAGAGCTCTCCG
TGGAGGAGCGCAACCTTCTCTCGGTCGCCTACAAGAATGTGATTGGCTCC
CGTCGTGCGTCGTGGCGTGTCATTTCCTCCATCGAGCAGAAAGGGGAGCA
GGAGCGCCTGCCTCTCATCAGGGAGTACAAGGCCAAAATTGAGGACGAGC
TGCTGGAGATCTGCAACGACATCTTGAACATAATAGAGACGGAACTCATC
CCCAACTCGACGTCGGAGGAAGGCAAGGTGTTTTACTTCAAGATGAAGGG
CGACTACCACCGGTACTTGGCCGAGTTCCAGGTAAGCCCAAAAGCAGACG
CGAAAACCCAACGAACAAAAACACGCACATCCATTTCAAAATAGTCAACC
ACGTCGACTATGCCCACCCTCTCACTCTCTCTATGGCCAGCAAACAATCT
GTCCTGGAACGTCCGCCCGTCGATATAACACCTCCGTCCTTCCTTCCTTG
TGCTCCTTTCATCCAGGTGGGTGACAAACGCCGGGAGTCCTCTGATGCCG
CCTTGTCCGCGTACAAGTGTGCCACAGACATTGCCGAGCATGACCTGCCT
CCTACCCATCCCATCCGGCTGGGGCTAGCCCTGAACTTCTCCGTCTTCTT
CTACGAGATCTACAACAGCCCTGTACGGAATGTGGAAGGGAGGGAGGGAG
GGAGGGAGGGGAGGGTGAAAAGAGAAGCAGAGCATCAGCGTCTTCTGCCG
GAAGGAGAAGAGAGAGGGTCTCGGATAAAAGATGTAAAGTTGGATTGATT
TTATATGTTAGAAATGCCTGGCACGCGCTCTTTCACTCACTGAACTCCCT
CCCTTCCCCCGTCCCCCCCCCTTGATTTGATGATTGAACAGGACCGTGCC
TGCGCCCTGGCCAAGAAGGCATTCGACGATGCCATTGCGGAGCTGGACAC
GCTGTCGGAGGAGTCGTACAAGGACAGCACGCTCATCATGCAGCTCTTGC
GTGACAACCTGACGTTGTGGACGTCCGACCAGAACGAGGCGGACGAGGCG
GGCGCCAACAACGAGGACGGGAACCGCGCGGAGGACCTCTAATCCGAGCA
TCTGTAGAGGGAGCCAGGGAAGGATTGGGGAAGGAATGTAGGAAGGGAGA
GGAAAGGCTGCTTGGAGGAAGTGGCGTGACGCCGTTTGAGGGAGGGATGG
AGGGAGGGAGGGAGGGGTGGTTTCAGACACGGTGTCGTCTGCACAGAAAA
TTGAAAGGGATGGTGGCGGATGAAG
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Coding sequence (CDS) from alignment at scaffold_2:591148..593022-

>mRNA_855 ID=mRNA_855|Name=jgi.p|Nanoce1779_2|574385|organism=Nannochloropsis oceanica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_2:591148..593022- (Nannochloropsis oceanica)
GACCGTGCCTGCGCCCTGGCCAAGAAGGCATTCGACGATGCCATTGCGGA
GCTGGACACGCTGTCGGAGGAGTCGTACAAGGACAGCACGCTCATCATGC
AGCTCTTGCGTGACAACCTGACGTTGTGGACGTCCGACCAGAACGAGGCG
GACGAGGCGGGCGCCAACAACGAGGACGGGAACCGCGCGGAGGACCTCTA
AGTGGGTGACAAACGCCGGGAGTCCTCTGATGCCGCCTTGTCCGCGTACA
AGTGTGCCACAGACATTGCCGAGCATGACCTGCCTCCTACCCATCCCATC
CGGCTGGGGCTAGCCCTGAACTTCTCCGTCTTCTTCTACGAGATCTACAA
CAGCCCTATGGATTCCCGGGACTCCTTGGTGTATAAAGCGAAGCTTGCCG
AGCAAGCCGAGCGCTTCGACGAGATGGTTGATCATATGAAGGCTGTGGCC
CAGCAGCCCCAAGAGCTCTCCGTGGAGGAGCGCAACCTTCTCTCGGTCGC
CTACAAGAATGTGATTGGCTCCCGTCGTGCGTCGTGGCGTGTCATTTCCT
CCATCGAGCAGAAAGGGGAGCAGGAGCGCCTGCCTCTCATCAGGGAGTAC
AAGGCCAAAATTGAGGACGAGCTGCTGGAGATCTGCAACGACATCTTGAA
CATAATAGAGACGGAACTCATCCCCAACTCGACGTCGGAGGAAGGCAAGG
TGTTTTACTTCAAGATGAAGGGCGACTACCACCGGTACTTGGCCGAGTTC
CAGGACCGTGCCTGCGCCCTGGCCAAGAAGGCATTCGACGATGCCATTGC
GGAGCTGGACACGCTGTCGGAGGAGTCGTACAAGGACAGCACGCTCATCA
TGCAGCTCTTGCGTGACAACCTGACGTTGTGGACGTCCGACCAGAACGAG
GCGGACGAGGCGGGCGCCAACAACGAGGACGGGAACCGCGCGGAGGACCT
CTAAGTGGGTGACAAACGCCGGGAGTCCTCTGATGCCGCCTTGTCCGCGT
ACAAGTGTGCCACAGACATTGCCGAGCATGACCTGCCTCCTACCCATCCC
ATCCGGCTGGGGCTAGCCCTGAACTTCTCCGTCTTCTTCTACGAGATCTA
CAACAGCCCTATGGATTCCCGGGACTCCTTGGTGTATAAAGCGAAGCTTG
CCGAGCAAGCCGAGCGCTTCGACGAGATGGTTGATCATATGAAGGCTGTG
GCCCAGCAGCCCCAAGAGCTCTCCGTGGAGGAGCGCAACCTTCTCTCGGT
CGCCTACAAGAATGTGATTGGCTCCCGTCGTGCGTCGTGGCGTGTCATTT
CCTCCATCGAGCAGAAAGGGGAGCAGGAGCGCCTGCCTCTCATCAGGGAG
TACAAGGCCAAAATTGAGGACGAGCTGCTGGAGATCTGCAACGACATCTT
GAACATAATAGAGACGGAACTCATCCCCAACTCGACGTCGGAGGAAGGCA
AGGTGTTTTACTTCAAGATGAAGGGCGACTACCACCGGTACTTGGCCGAG
TTCCAGGACCGTGCCTGCGCCCTGGCCAAGAAGGCATTCGACGATGCCAT
TGCGGAGCTGGACACGCTGTCGGAGGAGTCGTACAAGGACAGCACGCTCA
TCATGCAGCTCTTGCGTGACAACCTGACGTTGTGGACGTCCGACCAGAAC
GAGGCGGACGAGGCGGGCGCCAACAACGAGGACGGGAACCGCGCGGAGGA
CCTCTAAGTGGGTGACAAACGCCGGGAGTCCTCTGATGCCGCCTTGTCCG
CGTACAAGTGTGCCACAGACATTGCCGAGCATGACCTGCCTCCTACCCAT
CCCATCCGGCTGGGGCTAGCCCTGAACTTCTCCGTCTTCTTCTACGAGAT
CTACAACAGCCCTATGGATTCCCGGGACTCCTTGGTGTATAAAGCGAAGC
TTGCCGAGCAAGCCGAGCGCTTCGACGAGATGGTTGATCATATGAAGGCT
GTGGCCCAGCAGCCCCAAGAGCTCTCCGTGGAGGAGCGCAACCTTCTCTC
GGTCGCCTACAAGAATGTGATTGGCTCCCGTCGTGCGTCGTGGCGTGTCA
TTTCCTCCATCGAGCAGAAAGGGGAGCAGGAGCGCCTGCCTCTCATCAGG
GAGTACAAGGCCAAAATTGAGGACGAGCTGCTGGAGATCTGCAACGACAT
CTTGAACATAATAGAGACGGAACTCATCCCCAACTCGACGTCGGAGGAAG
GCAAGGTGTTTTACTTCAAGATGAAGGGCGACTACCACCGGTACTTGGCC
GAGTTCCAG
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Synonyms
Publications