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Properties
| Property Name | Value |
|---|
| TranscriptId | 603149 |
| Track | FilteredModels2 |
| ProteinId | 603063 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_26 | supercontig | scaffold_26:174316..176641 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8549 ID=mRNA_8549|Name=jgi.p|Nanoce1779_2|603063|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp
CCCGCCACAACGCACGACTTCCTGCCTGCGGTCCTCCTCCTGCTCCTCCT
CCTCCTCTCGGTCTAAATTTGATCCCGCCCGACTCGATTGCTTGCGGCGG
CACGAGAACCTACGACGGAAGCGCGAAGCGCAAATGCAAGTCATCCGAGC
CAAAGAAGACTTGGCCAGGAATTTCAAAGCACGGCCCTTGCCGCCCATCC
ATCGCGGCGCTTCGTTCGTCGAGCCCGACAAAAGCACTAACGACGTAGAA
AAAAACTCCGCGATTTACATCCGGCCCTTTATGTCCATGTCTAGCTCCAA
CAGCAGCATCGAAGACAGCACAGAGGGAGGCTCTCCGTTCTCCTCTTATT
CTCGCTATTGCACTACGGGCGCGGGCTCCACATTTAGAACATCACCATGC
AGGAAAGCCACTTCTCCGCGTGCTACTGATTCTGGATTCTTATCTCCTCA
GTGTCAAGATAACGATGATGAATTTGGAAGAAGCATATACATGCTCGAGG
ACGGCATTGGCCTGCTCCAGCGGCAGAGGGAATGGGCTGATAGCCGAGAG
CGGCGATTGGAGGCAGCCCGGGTGGTCAAAGCTGTTGAGGAGGTGGCGGA
GGTTCGATCAATGCCTGACTTGTCTGAGGCCCGGTCAAGTTGGCTGAAGG
CTAAGGCCGAGCATAAGAGAGCACAACTCCGCGCTTTGGAGCAAGACAAA
GAGCGACAGGCTGTCGAGGTACTAAAGCAACAGGTGGTACTGAAGCGGCA
CCAAGGCATGCACAGACAAGGCGGGACGCGGCGGCTAAAGCAACAGGAAG
AAGTCCTGCAGCTGCCAAGCGCTCAGCCGTCTGAGAAGGGGCACAACCAG
CTCGAGCGCCGGAATCTGAGCCATGTCCCTCTCCGCCTTGTCTGCTCAAC
ATCGATTGTTGATACCGGTGAGATAGAGCGGGGGAAAGGATGGAAAGAGA
AGCGCGACCAGACAGACTACTATAGCGACCAACATACAACTGCACTTACT
GTCGCCCCGCGTGTCAATCCACCTCTCTTCCACGCCCTACTCGCAACATC
TTCGCCTGCTCCGAGTACAAGTCTTTGTCAAATTGCCACCCCGAACAGAC
ACATCGCAGCTTCCTCCTTTTCGATCACATCCTGTTCCAGGGCACTTGAT
ATGTACCGCTCACCGAATAAGAGACAGTGCTGCTCGTCCTTGTCACCTTC
ATCATCACCACTCCGCTGTGGTCATCTTACTTTCTGCCCACACTCTTGGC
CTCTCCCTTCAAAATTCACCAAAACGAAGGGAGGTAACAGCAACGGCTCC
ACGGCCACACCAATGCCACAATTAATCCCACCTCCTCCTCAACCTCCTAT
CACTTGTCAACTGCTTTCTAACAGTTCGTGGGAGAATGCCGACGCGCCAT
GGGGGAGGGATTTGCCCAGCCTGGACCTACTTGACGATCATGGCAAGCTT
TACACCGATGGTAGTCACGAAGTGGCTAGTTTATTGCACGATCATGGCGC
TTGGGCAGGTGACAGCGATGAGCAAGAAAATGATTCGGGCGATGTAGAAT
TACGCCGCTGGAGTAGTTGTGACAGTCCCAGCAGCCCCAGTAGTTCCAGC
AGCAGCAGGAGTAAGAGTAGAAGTAGGAGTAGGAGTAGTGGTAGTAGTAG
CAGCAGCATCAGCATCGGAGCGGACCTTGCCCGAAGCTGGAAGGTTAAAC
TGGTTCAGGAGGAAGACGTTCTGCTGGCGCGCATGCTCAACAGTGGTGTG
GACAAGGTGGGAGAAAGCAAGTGGGAAGAGAGGGAAAGACAGCACTGACT
TTGTATGCATGTGTCGAAATGTGGTGGGAGAGCGTCGAGCAACTCGACAT
TTTGCCGAAACCAACAGATCTTACAAGACTACAGTAGTACAAAAAATAAT
CCCCCAAAGTTCTTTGTACAATTGAGTGCGACTGTGCGTGCGAGGCAGAA
TTGTGTGACACGTCATGTGCCTCTGCTTCACCCAGCTCGGGAGGATGAGT
GGACAGGGAGGGATGTCTCATAGAGGCAGGCGCGTGCCTTAAGAGGCTGC
GTTCGACAAAGCTACGTCCGAGCGATAAAGCTACATTCGAGTGCATTTCC
CATTTTTTTTGCGTTTCCTTCACGCCATTTACCTCTTTTCTCGACGTCGC
CACTTTTCGTCCCCATTCCCCTTCATCCCTGAG back to topprotein sequence of jgi.p|Nanoce1779_2|603063 >mRNA_8549-protein ID=mRNA_8549-protein|Name=jgi.p|Nanoce1779_2|603063|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MQVIRAKEDLARNFKARPLPPIHRGASFVEPDKSTNDVEKNSAIYIRPFM
SMSSSNSSIEDSTEGGSPFSSYSRYCTTGAGSTFRTSPCRKATSPRATDS
GFLSPQCQDNDDEFGRSIYMLEDGIGLLQRQREWADSRERRLEAARVVKA
VEEVAEVRSMPDLSEARSSWLKAKAEHKRAQLRALEQDKERQAVEVLKQQ
VVLKRHQGMHRQGGTRRLKQQEEVLQLPSAQPSEKGHNQLERRNLSHVPL
RLVCSTSIVDTGEIERGKGWKEKRDQTDYYSDQHTTALTVAPRVNPPLFH
ALLATSSPAPSTSLCQIATPNRHIAASSFSITSCSRALDMYRSPNKRQCC
SSLSPSSSPLRCGHLTFCPHSWPLPSKFTKTKGGNSNGSTATPMPQLIPP
PPQPPITCQLLSNSSWENADAPWGRDLPSLDLLDDHGKLYTDGSHEVASL
LHDHGAWAGDSDEQENDSGDVELRRWSSCDSPSSPSSSSSSRSKSRSRSR
SSGSSSSSISIGADLARSWKVKLVQEEDVLLARMLNSGVDKVGESKWEER
ERQH* back to topmRNA from alignment at scaffold_26:174316..176641- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8549 ID=mRNA_8549|Name=jgi.p|Nanoce1779_2|603063|organism=Nannochloropsis oceanica|type=mRNA|length=2326bp|location=Sequence derived from alignment at scaffold_26:174316..176641- (Nannochloropsis oceanica)
CCCGCCACAACGCACGACTTCCTGCCTGCGGTCCTCCTCCTGCTCCTCCT
CCTCCTCTCGGTCTAAATTTGATCCCGCCCGACTCGATTGCTTGCGGCGG
CACGAGAACCTACGACGGAAGCGCGAAGCGCAAATGCAAGTCATCCGAGC
CAAAGAAGGTACGCCCACTCTCTAATCTTTTTAATAGAAGCACGCACGTG
AATCCATCCCCTCAAACACACACATCATAGACTTGGCCAGGAATTTCAAA
GCACGGCCCTTGCCGCCCATCCATCGCGGCGCTTCGTTCGTCGAGCCCGA
CAAAAGCACTAACGACGTAGAAAAAAACTCCGCGATTTACATCCGGCCCT
TTATGTCCATGTCTAGCTCCAACAGCAGCATCGAAGACAGCACAGAGGGA
GGCTCTCCGTTCTCCTCTTATTCTCGCTATTGCACTACGGGCGCGGGCTC
CACATTTAGAACATCACCATGCAGGAAAGCCACTTCTCCGCGTGCTACTG
ATTCTGGATTCTTATCTCCTCAGTGTCAAGATAACGATGATGAATTTGGA
AGAAGCATATACATGCTCGAGGACGGCATTGGCCTGCTCCAGCGGCAGAG
GGAATGGGCTGATAGCCGAGAGCGGCGATTGGAGGCAGCCCGGGTGGTCA
AAGCTGTTGAGGAGGTGGCGGTATGTGCAGATTTGTGTCTATGTGCGGTA
TAAGAACTCGATTTACCGCTCGCATACTCACGCACATACAGGAGGTTCGA
TCAATGCCTGACTTGTCTGAGGCCCGGTCAAGTTGGCTGAAGGCTAAGGC
CGAGCATAAGAGAGCACAACTCCGCGCTTTGGAGCAAGACAAAGAGCGAC
AGGCTGTCGAGGTACTAAAGCAACAGGTGGTACTGAAGCGGCACCAAGGC
ATGCACAGACAAGGCGGGACGCGGCGGCTAAAGCAACAGGAAGAAGTCCT
GCAGCTGCCAAGCGCTCAGCCGTCTGAGAAGGGGCACAACCAGCTCGAGC
GCCGGAATCTGAGCCATGTCCCTCTCCGCCTTGTCTGCTCAACATCGATT
GTTGATACCGGTGAGATAGAGCGGGGGAAAGGATGGAAAGAGAAGCGCGA
CCAGACAGACTACTATAGCGACCAACATACAACTGCACTTACTGTCGCCC
CGCGTGTCAATCCACCTCTCTTCCACGCCCTACTCGCAACATCTTCGCCT
GCTCCGAGTACAAGTCTTTGTCAAATTGCCACCCCGAACAGACACATCGC
AGCTTCCTCCTTTTCGATCACATCCTGTTCCAGGGCACTTGATATGTACC
GCTCACCGAATAAGAGACAGTGCTGCTCGTCCTTGTCACCTTCATCATCA
CCACTCCGCTGTGGTCATCTTACTTTCTGCCCACACTCTTGGCCTCTCCC
TTCAAAATTCACCAAAACGAAGGGAGGTAACAGCAACGGCTCCACGGCCA
CACCAATGCCACAATTAATCCCACCTCCTCCTCAACCTCCTATCACTTGT
CAACTGCTTTCTAACAGTTCGTGGGAGAATGCCGACGCGCCATGGGGGAG
GGATTTGCCCAGCCTGGACCTACTTGACGATCATGGCAAGCTTTACACCG
ATGGTAGTCACGAAGTGGCTAGTTTATTGCACGATCATGGCGCTTGGGCA
GGTGACAGCGATGAGCAAGAAAATGATTCGGGCGATGTAGAATTACGCCG
CTGGAGTAGTTGTGACAGTCCCAGCAGCCCCAGTAGTTCCAGCAGCAGCA
GGAGTAAGAGTAGAAGTAGGAGTAGGAGTAGTGGTAGTAGTAGCAGCAGC
ATCAGCATCGGAGCGGACCTTGCCCGAAGCTGGAAGGTTAAACTGGTTCA
GGAGGAAGACGTTCTGCTGGCGCGCATGCTCAACAGTGGTGTGGACAAGG
TGGGAGAAAGCAAGTGGGAAGAGAGGGAAAGACAGCACTGACTTTGTATG
CATGTGTCGAAATGTGGTGGGAGAGCGTCGAGCAACTCGACATTTTGCCG
AAACCAACAGATCTTACAAGACTACAGTAGTACAAAAAATAATCCCCCAA
AGTTCTTTGTACAATTGAGTGCGACTGTGCGTGCGAGGCAGAATTGTGTG
ACACGTCATGTGCCTCTGCTTCACCCAGCTCGGGAGGATGAGTGGACAGG
GAGGGATGTCTCATAGAGGCAGGCGCGTGCCTTAAGAGGCTGCGTTCGAC
AAAGCTACGTCCGAGCGATAAAGCTACATTCGAGTGCATTTCCCATTTTT
TTTGCGTTTCCTTCACGCCATTTACCTCTTTTCTCGACGTCGCCACTTTT
CGTCCCCATTCCCCTTCATCCCTGAG back to topCoding sequence (CDS) from alignment at scaffold_26:174316..176641- >mRNA_8549 ID=mRNA_8549|Name=jgi.p|Nanoce1779_2|603063|organism=Nannochloropsis oceanica|type=CDS|length=4995bp|location=Sequence derived from alignment at scaffold_26:174316..176641- (Nannochloropsis oceanica)
GAGGTTCGATCAATGCCTGACTTGTCTGAGGCCCGGTCAAGTTGGCTGAA
GGCTAAGGCCGAGCATAAGAGAGCACAACTCCGCGCTTTGGAGCAAGACA
AAGAGCGACAGGCTGTCGAGGTACTAAAGCAACAGGTGGTACTGAAGCGG
CACCAAGGCATGCACAGACAAGGCGGGACGCGGCGGCTAAAGCAACAGGA
AGAAGTCCTGCAGCTGCCAAGCGCTCAGCCGTCTGAGAAGGGGCACAACC
AGCTCGAGCGCCGGAATCTGAGCCATGTCCCTCTCCGCCTTGTCTGCTCA
ACATCGATTGTTGATACCGGTGAGATAGAGCGGGGGAAAGGATGGAAAGA
GAAGCGCGACCAGACAGACTACTATAGCGACCAACATACAACTGCACTTA
CTGTCGCCCCGCGTGTCAATCCACCTCTCTTCCACGCCCTACTCGCAACA
TCTTCGCCTGCTCCGAGTACAAGTCTTTGTCAAATTGCCACCCCGAACAG
ACACATCGCAGCTTCCTCCTTTTCGATCACATCCTGTTCCAGGGCACTTG
ATATGTACCGCTCACCGAATAAGAGACAGTGCTGCTCGTCCTTGTCACCT
TCATCATCACCACTCCGCTGTGGTCATCTTACTTTCTGCCCACACTCTTG
GCCTCTCCCTTCAAAATTCACCAAAACGAAGGGAGGTAACAGCAACGGCT
CCACGGCCACACCAATGCCACAATTAATCCCACCTCCTCCTCAACCTCCT
ATCACTTGTCAACTGCTTTCTAACAGTTCGTGGGAGAATGCCGACGCGCC
ATGGGGGAGGGATTTGCCCAGCCTGGACCTACTTGACGATCATGGCAAGC
TTTACACCGATGGTAGTCACGAAGTGGCTAGTTTATTGCACGATCATGGC
GCTTGGGCAGGTGACAGCGATGAGCAAGAAAATGATTCGGGCGATGTAGA
ATTACGCCGCTGGAGTAGTTGTGACAGTCCCAGCAGCCCCAGTAGTTCCA
GCAGCAGCAGGAGTAAGAGTAGAAGTAGGAGTAGGAGTAGTGGTAGTAGT
AGCAGCAGCATCAGCATCGGAGCGGACCTTGCCCGAAGCTGGAAGGTTAA
ACTGGTTCAGGAGGAAGACGTTCTGCTGGCGCGCATGCTCAACAGTGGTG
TGGACAAGGTGGGAGAAAGCAAGTGGGAAGAGAGGGAAAGACAGCACTGA
ACTTGGCCAGGAATTTCAAAGCACGGCCCTTGCCGCCCATCCATCGCGGC
GCTTCGTTCGTCGAGCCCGACAAAAGCACTAACGACGTAGAAAAAAACTC
CGCGATTTACATCCGGCCCTTTATGTCCATGTCTAGCTCCAACAGCAGCA
TCGAAGACAGCACAGAGGGAGGCTCTCCGTTCTCCTCTTATTCTCGCTAT
TGCACTACGGGCGCGGGCTCCACATTTAGAACATCACCATGCAGGAAAGC
CACTTCTCCGCGTGCTACTGATTCTGGATTCTTATCTCCTCAGTGTCAAG
ATAACGATGATGAATTTGGAAGAAGCATATACATGCTCGAGGACGGCATT
GGCCTGCTCCAGCGGCAGAGGGAATGGGCTGATAGCCGAGAGCGGCGATT
GGAGGCAGCCCGGGTGGTCAAAGCTGTTGAGGAGGTGGCGATGCAAGTCA
TCCGAGCCAAAGAAGGAGGTTCGATCAATGCCTGACTTGTCTGAGGCCCG
GTCAAGTTGGCTGAAGGCTAAGGCCGAGCATAAGAGAGCACAACTCCGCG
CTTTGGAGCAAGACAAAGAGCGACAGGCTGTCGAGGTACTAAAGCAACAG
GTGGTACTGAAGCGGCACCAAGGCATGCACAGACAAGGCGGGACGCGGCG
GCTAAAGCAACAGGAAGAAGTCCTGCAGCTGCCAAGCGCTCAGCCGTCTG
AGAAGGGGCACAACCAGCTCGAGCGCCGGAATCTGAGCCATGTCCCTCTC
CGCCTTGTCTGCTCAACATCGATTGTTGATACCGGTGAGATAGAGCGGGG
GAAAGGATGGAAAGAGAAGCGCGACCAGACAGACTACTATAGCGACCAAC
ATACAACTGCACTTACTGTCGCCCCGCGTGTCAATCCACCTCTCTTCCAC
GCCCTACTCGCAACATCTTCGCCTGCTCCGAGTACAAGTCTTTGTCAAAT
TGCCACCCCGAACAGACACATCGCAGCTTCCTCCTTTTCGATCACATCCT
GTTCCAGGGCACTTGATATGTACCGCTCACCGAATAAGAGACAGTGCTGC
TCGTCCTTGTCACCTTCATCATCACCACTCCGCTGTGGTCATCTTACTTT
CTGCCCACACTCTTGGCCTCTCCCTTCAAAATTCACCAAAACGAAGGGAG
GTAACAGCAACGGCTCCACGGCCACACCAATGCCACAATTAATCCCACCT
CCTCCTCAACCTCCTATCACTTGTCAACTGCTTTCTAACAGTTCGTGGGA
GAATGCCGACGCGCCATGGGGGAGGGATTTGCCCAGCCTGGACCTACTTG
ACGATCATGGCAAGCTTTACACCGATGGTAGTCACGAAGTGGCTAGTTTA
TTGCACGATCATGGCGCTTGGGCAGGTGACAGCGATGAGCAAGAAAATGA
TTCGGGCGATGTAGAATTACGCCGCTGGAGTAGTTGTGACAGTCCCAGCA
GCCCCAGTAGTTCCAGCAGCAGCAGGAGTAAGAGTAGAAGTAGGAGTAGG
AGTAGTGGTAGTAGTAGCAGCAGCATCAGCATCGGAGCGGACCTTGCCCG
AAGCTGGAAGGTTAAACTGGTTCAGGAGGAAGACGTTCTGCTGGCGCGCA
TGCTCAACAGTGGTGTGGACAAGGTGGGAGAAAGCAAGTGGGAAGAGAGG
GAAAGACAGCACTGAACTTGGCCAGGAATTTCAAAGCACGGCCCTTGCCG
CCCATCCATCGCGGCGCTTCGTTCGTCGAGCCCGACAAAAGCACTAACGA
CGTAGAAAAAAACTCCGCGATTTACATCCGGCCCTTTATGTCCATGTCTA
GCTCCAACAGCAGCATCGAAGACAGCACAGAGGGAGGCTCTCCGTTCTCC
TCTTATTCTCGCTATTGCACTACGGGCGCGGGCTCCACATTTAGAACATC
ACCATGCAGGAAAGCCACTTCTCCGCGTGCTACTGATTCTGGATTCTTAT
CTCCTCAGTGTCAAGATAACGATGATGAATTTGGAAGAAGCATATACATG
CTCGAGGACGGCATTGGCCTGCTCCAGCGGCAGAGGGAATGGGCTGATAG
CCGAGAGCGGCGATTGGAGGCAGCCCGGGTGGTCAAAGCTGTTGAGGAGG
TGGCGATGCAAGTCATCCGAGCCAAAGAAGGAGGTTCGATCAATGCCTGA
CTTGTCTGAGGCCCGGTCAAGTTGGCTGAAGGCTAAGGCCGAGCATAAGA
GAGCACAACTCCGCGCTTTGGAGCAAGACAAAGAGCGACAGGCTGTCGAG
GTACTAAAGCAACAGGTGGTACTGAAGCGGCACCAAGGCATGCACAGACA
AGGCGGGACGCGGCGGCTAAAGCAACAGGAAGAAGTCCTGCAGCTGCCAA
GCGCTCAGCCGTCTGAGAAGGGGCACAACCAGCTCGAGCGCCGGAATCTG
AGCCATGTCCCTCTCCGCCTTGTCTGCTCAACATCGATTGTTGATACCGG
TGAGATAGAGCGGGGGAAAGGATGGAAAGAGAAGCGCGACCAGACAGACT
ACTATAGCGACCAACATACAACTGCACTTACTGTCGCCCCGCGTGTCAAT
CCACCTCTCTTCCACGCCCTACTCGCAACATCTTCGCCTGCTCCGAGTAC
AAGTCTTTGTCAAATTGCCACCCCGAACAGACACATCGCAGCTTCCTCCT
TTTCGATCACATCCTGTTCCAGGGCACTTGATATGTACCGCTCACCGAAT
AAGAGACAGTGCTGCTCGTCCTTGTCACCTTCATCATCACCACTCCGCTG
TGGTCATCTTACTTTCTGCCCACACTCTTGGCCTCTCCCTTCAAAATTCA
CCAAAACGAAGGGAGGTAACAGCAACGGCTCCACGGCCACACCAATGCCA
CAATTAATCCCACCTCCTCCTCAACCTCCTATCACTTGTCAACTGCTTTC
TAACAGTTCGTGGGAGAATGCCGACGCGCCATGGGGGAGGGATTTGCCCA
GCCTGGACCTACTTGACGATCATGGCAAGCTTTACACCGATGGTAGTCAC
GAAGTGGCTAGTTTATTGCACGATCATGGCGCTTGGGCAGGTGACAGCGA
TGAGCAAGAAAATGATTCGGGCGATGTAGAATTACGCCGCTGGAGTAGTT
GTGACAGTCCCAGCAGCCCCAGTAGTTCCAGCAGCAGCAGGAGTAAGAGT
AGAAGTAGGAGTAGGAGTAGTGGTAGTAGTAGCAGCAGCATCAGCATCGG
AGCGGACCTTGCCCGAAGCTGGAAGGTTAAACTGGTTCAGGAGGAAGACG
TTCTGCTGGCGCGCATGCTCAACAGTGGTGTGGACAAGGTGGGAGAAAGC
AAGTGGGAAGAGAGGGAAAGACAGCACTGAACTTGGCCAGGAATTTCAAA
GCACGGCCCTTGCCGCCCATCCATCGCGGCGCTTCGTTCGTCGAGCCCGA
CAAAAGCACTAACGACGTAGAAAAAAACTCCGCGATTTACATCCGGCCCT
TTATGTCCATGTCTAGCTCCAACAGCAGCATCGAAGACAGCACAGAGGGA
GGCTCTCCGTTCTCCTCTTATTCTCGCTATTGCACTACGGGCGCGGGCTC
CACATTTAGAACATCACCATGCAGGAAAGCCACTTCTCCGCGTGCTACTG
ATTCTGGATTCTTATCTCCTCAGTGTCAAGATAACGATGATGAATTTGGA
AGAAGCATATACATGCTCGAGGACGGCATTGGCCTGCTCCAGCGGCAGAG
GGAATGGGCTGATAGCCGAGAGCGGCGATTGGAGGCAGCCCGGGTGGTCA
AAGCTGTTGAGGAGGTGGCGATGCAAGTCATCCGAGCCAAAGAAG back to top
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