jgi.p|Nanoce1779_2|603055, mRNA_8547 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603055
Unique NamemRNA_8547
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length977
Alignment locationscaffold_26:169944..171264 +

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Properties
Property NameValue
TranscriptId603141
TrackFilteredModels2
ProteinId603055
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:169944..171264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603055gene_8547Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603055mRNA_8547-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8547CDS_8547Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8547 ID=mRNA_8547|Name=jgi.p|Nanoce1779_2|603055|organism=Nannochloropsis oceanica|type=mRNA|length=977bp
ACAGGACCCTTCTGTTTCGTGAAATCACCAGTCAATCATGGGTGTGCGTA
CCAAGACCGTGAAAAAGTCGGCCCGAGTCATCATCGAGAAGTACTACTCC
CGCCTGACCATGGACTTCCACACCAACAAGCGCGTCGTCGACGAGGTGGC
TGAGGTCCCCTCCAAGCGCATGCGCAACAAGATCGCCGGTTTCGTCACGC
ACCTGATGAAGCGTATCCAGAAGGGCCCCGTGCGTGGGATCTCCCTCAAG
CTGCAGGAGGAGGAGCGAGAACGCCGATTGGACTTCGTGCCCGAGGTGTC
GCTGATCGAGCAGGAGCAACCGGAGGTGGACCAGGACTTGCGGGATTTGA
TGGAGCACATTGGTTTCAAGGACATCCTGTCCATTTAGACTAGTTTGCTG
CAATAGAAGGGGTAGGAGAAGGGGGCGAACGCCGTGACAAGGCAAGAAAA
ATAGACGCGGCCCAATACACTTGTCAGAAAAACGTTGTAGGGCAGGGGCC
GCCATGAGCAGTACGATACTCGAGAAGGGGAAAATGTTGGGAGGGAGCTT
GGAAAGATGATCAGGTATAGAGAAATGACATCACGCTGCAGCGGTGAAGA
GAAAGAAGGGGAGGGTGATACCTATTTTTTGACACTGATGTGTGTGGTTT
TCTTCATTTCATTTCTTGGGATCACGAATCTTATTGAAAACGAAGGAGGG
GATTCTCGAGCGTACCCTTGAGGAAGGAGGTTGGGTACAGTCTCTTTTTG
CGTATAAAGAAGAGACCGTCAACCTGTCGTGTCTAATTTGCTAGGCCTTG
TGCTGCCTCGCGCACCCGCACGGGTTAAAACACAAAGAAGAAAAAAAGAG
AATAACAATATTTGAGGCGTAAAATGCAGTGTTTCTTTCCCGCGCGATTG
TCATTGTTTTTGAAGGGAAGGCTTTGTGTTATGGTCGTTGATCATTTCAC
GTCGTCTCTTGGATCGCTCGCTCTCTT
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protein sequence of jgi.p|Nanoce1779_2|603055

>mRNA_8547-protein ID=mRNA_8547-protein|Name=jgi.p|Nanoce1779_2|603055|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIA
GFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQD
LRDLMEHIGFKDILSI*
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mRNA from alignment at scaffold_26:169944..171264+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8547 ID=mRNA_8547|Name=jgi.p|Nanoce1779_2|603055|organism=Nannochloropsis oceanica|type=mRNA|length=1321bp|location=Sequence derived from alignment at scaffold_26:169944..171264+ (Nannochloropsis oceanica)
ACAGGACCCTTCTGTTTCGTGAAATCACCAGTCAATCATGGTACGTTTTT
AGGCTGTTGGGTGGGTGGATGGTCATCGCAATGCAAGTAGCGCGTCTTCT
CCGTATACCGCGTGCCCTTCGTGTGTCCCTTCGTTGTCCTGTGCTTAACC
CATCAGCAACCCAATTCACAGATAATATGTAGTATGTGTAACTTCACGCT
TGGACGCGTGGCCTCCACGGGTTGGGTTTGTGGATGTCGTCGCTTGTCTC
CCTCTTTCCTTCCTTCTGTGCATCATCATCCCACCCCACCGCACTTGCCT
CCTTTTCACCCACGATTCATTCTACGCAACGATAAACATACGCTAACCCT
CTCCTCTCCTTCTATCCCCACCACCAACCAACAGGGTGTGCGTACCAAGA
CCGTGAAAAAGTCGGCCCGAGTCATCATCGAGAAGTACTACTCCCGCCTG
ACCATGGACTTCCACACCAACAAGCGCGTCGTCGACGAGGTGGCTGAGGT
CCCCTCCAAGCGCATGCGCAACAAGATCGCCGGTTTCGTCACGCACCTGA
TGAAGCGTATCCAGAAGGGCCCCGTGCGTGGGATCTCCCTCAAGCTGCAG
GAGGAGGAGCGAGAACGCCGATTGGACTTCGTGCCCGAGGTGTCGCTGAT
CGAGCAGGAGCAACCGGAGGTGGACCAGGACTTGCGGGATTTGATGGAGC
ACATTGGTTTCAAGGACATCCTGTCCATTTAGACTAGTTTGCTGCAATAG
AAGGGGTAGGAGAAGGGGGCGAACGCCGTGACAAGGCAAGAAAAATAGAC
GCGGCCCAATACACTTGTCAGAAAAACGTTGTAGGGCAGGGGCCGCCATG
AGCAGTACGATACTCGAGAAGGGGAAAATGTTGGGAGGGAGCTTGGAAAG
ATGATCAGGTATAGAGAAATGACATCACGCTGCAGCGGTGAAGAGAAAGA
AGGGGAGGGTGATACCTATTTTTTGACACTGATGTGTGTGGTTTTCTTCA
TTTCATTTCTTGGGATCACGAATCTTATTGAAAACGAAGGAGGGGATTCT
CGAGCGTACCCTTGAGGAAGGAGGTTGGGTACAGTCTCTTTTTGCGTATA
AAGAAGAGACCGTCAACCTGTCGTGTCTAATTTGCTAGGCCTTGTGCTGC
CTCGCGCACCCGCACGGGTTAAAACACAAAGAAGAAAAAAAGAGAATAAC
AATATTTGAGGCGTAAAATGCAGTGTTTCTTTCCCGCGCGATTGTCATTG
TTTTTGAAGGGAAGGCTTTGTGTTATGGTCGTTGATCATTTCACGTCGTC
TCTTGGATCGCTCGCTCTCTT
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Coding sequence (CDS) from alignment at scaffold_26:169944..171264+

>mRNA_8547 ID=mRNA_8547|Name=jgi.p|Nanoce1779_2|603055|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_26:169944..171264+ (Nannochloropsis oceanica)
ATGGGTGTGCGTACCAAGACCGTGAAAAAGTCGGCCCGAGTCATCATCGA
GAAGTACTACTCCCGCCTGACCATGGACTTCCACACCAACAAGCGCGTCG
TCGACGAGGTGGCTGAGGTCCCCTCCAAGCGCATGCGCAACAAGATCGCC
GGTTTCGTCACGCACCTGATGAAGCGTATCCAGAAGGGCCCCGTGCGTGG
GATCTCCCTCAAGCTGCAGGAGGAGGAGCGAGAACGCCGATTGGACTTCG
TGCCCGAGGTGTCGCTGATCGAGCAGGAGCAACCGGAGGTGGACCAGGAC
TTGCGGGATTTGATGGAGCACATTGGTTTCAAGGACATCCTGTCCATTTA
GATGGGTGTGCGTACCAAGACCGTGAAAAAGTCGGCCCGAGTCATCATCG
AGAAGTACTACTCCCGCCTGACCATGGACTTCCACACCAACAAGCGCGTC
GTCGACGAGGTGGCTGAGGTCCCCTCCAAGCGCATGCGCAACAAGATCGC
CGGTTTCGTCACGCACCTGATGAAGCGTATCCAGAAGGGCCCCGTGCGTG
GGATCTCCCTCAAGCTGCAGGAGGAGGAGCGAGAACGCCGATTGGACTTC
GTGCCCGAGGTGTCGCTGATCGAGCAGGAGCAACCGGAGGTGGACCAGGA
CTTGCGGGATTTGATGGAGCACATTGGTTTCAAGGACATCCTGTCCATTT
AG
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Synonyms
Publications