jgi.p|Nanoce1779_2|532709, mRNA_8544 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532709
Unique Name	mRNA_8544
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1692
Alignment location	scaffold_26:162615..164387 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532795
Track	FilteredModels2
ProteinId	532709

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:162615..164387 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532709	gene_8544	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532709	mRNA_8544-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8544	CDS_8544	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:162615..164387+
coding sequence from alignment at scaffold_26:162615..164387+

mRNA sequence

>mRNA_8544 ID=mRNA_8544|Name=jgi.p|Nanoce1779_2|532709|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp
ATGGTTAATGAACCACGAAGCGACGCGTTGCTTTGCTGTCTGAAGAGCCT
GGTGGACGACGCCGGGCCTGCAGACGCTGCTGCAGCAACTGGCGCTCGTT
TTGGTGGTGAGAGTGGTTATCCGAGTTTAGACGAATTGTCGCAGCTGGGC
ACGGTGCAGGTGCAAGGGCCGGGGGGAGGGAGCGTCAGCAGTGCACGTTG
CCTTGCGCTAGGCCCGCCTGCAGACGCGCTGGCTTTGTTAAGTTCCCTTG
TCTTGTTTGTGGGTAAGGTGGAGGAAGGGAAGGAGGAGAAGAGGGCGTAT
GTCATGGAGAATGAGGGCGGGGGAGGGGTGGAGTCCAATGAAGTGGGTTC
GATGGATAACAGCAATAGCTGCAGCAGTAACGAGGTCAGCAGCAGTCGCA
GCGCGATCGAGGAAGAGGGGGAGGGAGGGTGGGAGGTTGACGGATCCATG
GCTCTTTTTTCGCAGGGGCTGGACTCCTACTTGGCAGAATTGCCGACGTG
CTTGCAATGTCTCAACCGTCTCGATCCTGTTGCCGTAGGGGTAGCCCTAG
GTATCCCCCCTCTTCCCGGCACCGCTGCTGCTGATGATGCTGCTGATGCT
GCTGCTGCAGCTAGAATTGTTACTGCGTCCTTCCTTGACGATAGACATAG
CAGCAACAATGTGACCGTGAAAAGTTATATCTGCAGTGGTGTTGCATCCT
CCTCATGCGCAACGTGTCAAAAAGTCCAAATCTACGCCAACCTTAAGCAA
AAACGAAAACGCACATTACGAGGCTTCGAACGAGGAAGGGAAGGAGGGAG
GGACGGGACACCCACCGCCACCGCCACAAGTACTCTCCACACTCTCACCT
GCAACACGTGCGGAATTCCCGAAAACCTGTGGATCTGCCTGTTGTGTAGT
CACGTGGGGTGTGGGCGCTACACAGCCGAGCACGCCAAAATGCACTTTCA
TCAATCAGGCCATATTTTTTCATTAGAGCTAGCCACGGGGAGAGTGTGGG
ACTACGTTGAAGATGTCTTTGTGCATGCAACGCAGTGTCAAGGCGGAAGG
GGGTGGCGGATGACTGCGGCTGCGATGGGGGGACAGGCAAGGCGGGGGGG
GGAGGACGCGGAGGGAGAGGGGGGAATAAGGGGGCGACGTGGAAGGATGG
AGAAGGGGCCTCAGGGAAAGTTGGATGGATTGGGAGCGGAATATAGTGCG
CTGTTGATGTCTCAGTTGGAGGAACAGAAACATTATTACGAACGATTGTT
GGCAAAGACGGCAGCAGAGCTGGCACATAGTGTCTGTCAGGATGAGATGC
CGGAGGGGGTACGGCGGGAGGCCGATCAAGTAAGGGGGCAGATTGCAAGG
TTGGAAGAAGAGCATTTGAAGCTGATGGAGGCATTGAGAGAGGAGGAGGA
GATGGCACGACAGATGAGAGGGAGGAATCAGGGGTTATTGCAGGAGCAGA
AGCAGCACGTGAGTCATTTGGCTAGTCTCCGGAAGGCAATTAGTAAGGCC
AAGACGGCGTTAGACACCGAAGTGGCTGATTTGGAAGCGCAAATAAACGA
TTTATCTTTTTTCTTGCGGACGAAGACGGCGGTGCAAGAATCCGAGTTGG
AAGGGGGTGGGGTAATGATTGGGCATACGGTGACGGCGGCAGCGCCGAGA
GGGGGGAGGGGGGGAAGGAGGAGGAAGGGTGGGGGCAAGTAA

protein sequence of jgi.p|Nanoce1779_2|532709

>mRNA_8544-protein ID=mRNA_8544-protein|Name=jgi.p|Nanoce1779_2|532709|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MVNEPRSDALLCCLKSLVDDAGPADAAAATGARFGGESGYPSLDELSQLG
TVQVQGPGGGSVSSARCLALGPPADALALLSSLVLFVGKVEEGKEEKRAY
VMENEGGGGVESNEVGSMDNSNSCSSNEVSSSRSAIEEEGEGGWEVDGSM
ALFSQGLDSYLAELPTCLQCLNRLDPVAVGVALGIPPLPGTAAADDAADA
AAAARIVTASFLDDRHSSNNVTVKSYICSGVASSSCATCQKVQIYANLKQ
KRKRTLRGFERGREGGRDGTPTATATSTLHTLTCNTCGIPENLWICLLCS
HVGCGRYTAEHAKMHFHQSGHIFSLELATGRVWDYVEDVFVHATQCQGGR
GWRMTAAAMGGQARRGGEDAEGEGGIRGRRGRMEKGPQGKLDGLGAEYSA
LLMSQLEEQKHYYERLLAKTAAELAHSVCQDEMPEGVRREADQVRGQIAR
LEEEHLKLMEALREEEEMARQMRGRNQGLLQEQKQHVSHLASLRKAISKA
KTALDTEVADLEAQINDLSFFLRTKTAVQESELEGGGVMIGHTVTAAAPR
GGRGGRRRKGGGK*

mRNA from alignment at scaffold_26:162615..164387+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8544 ID=mRNA_8544|Name=jgi.p|Nanoce1779_2|532709|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp|location=Sequence derived from alignment at scaffold_26:162615..164387+ (Nannochloropsis oceanica)
ATGGTTAATGAACCACGAAGCGACGCGTTGCTTTGCTGTCTGAAGAGCCT
GGTGGACGACGCCGGGCCTGCAGACGCTGCTGCAGCAACTGGCGCTCGTT
TTGGTGGTGAGAGTGGTTATCCGAGTTTAGACGAATTGTCGCAGCTGGGC
ACGGTGCAGGTGCAAGGGCCGGGGGGAGGGAGCGTCAGCAGTGCACGTTG
CCTTGCGCTAGGCCCGCCTGCAGACGCGCTGGCTTTGTTAAGTTCCCTTG
TCTTGTTTGTGGGTAAGGTGGAGGAAGGGAAGGAGGAGAAGAGGGCGTAT
GTCATGGAGAATGAGGGCGGGGGAGGGGTGGAGTCCAATGAAGTGGGTTC
GATGGATAACAGCAATAGCTGCAGCAGTAACGAGGTCAGCAGCAGTCGCA
GCGCGATCGAGGAAGAGGGGGAGGGAGGGTGGGAGGTTGACGGATCCATG
GCTCTTTTTTCGCAGGGGCTGGACTCCTACTTGGCAGAATTGCCGACGTG
CTTGCAATGTCTCAACCGTCTCGATCCTGTTGCCGTAGGGGTAGCCCTAG
GTATCCCCCCTCTTCCCGGCACCGCTGCTGCTGATGATGCTGCTGATGCT
GCTGCTGCAGCTAGAATTGTTACTGCGTCCTTCCTTGACGATAGACATAG
CAGCAACAATGTGACCGTGAAAAGTTATATCTGCAGTGGTGTTGCATCCT
CCTCATGCGCAACGTGTCAAAAAGTCCAAATCTACGCCAACCTTAAGCAA
AAACGAAAACGCACATTACGAGGCTTCGAACGAGGAAGGGAAGGAGGGAG
GGACGGGACACCCACCGCCACCGCCACAAGTACTCTCCACACTCTCACCT
GCAACACGTGCGGAATTCCCGAAAACCTGTGGATCTGCCTGTTGTGTAGT
CACGTGGGGTGTGGGCGCTACACAGCCGAGCACGCCAAAATGCACTTTCA
TCAATCAGGCCATATTTTTTCATTAGAGCTAGCCACGGGGAGAGTGTGGG
ACTACGTTGAAGATGTCTTTGTGCATGCAACGCAGTGTCAAGGCGGAAGG
GGGTGGCGGATGACTGCGGCTGCGATGGGGGGACAGGCAAGGCGGGGGGG
GGTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGA
AGGAGGAGGAAGAGGAGGGGAAGATCGCAGAGGAGGACGCGGAGGGAGAG
GGGGGAATAAGGGGGCGACGTGGAAGGATGGAGAAGGGGCCTCAGGGAAA
GTTGGATGGATTGGGAGCGGAATATAGTGCGCTGTTGATGTCTCAGTTGG
AGGAACAGAAACATTATTACGAACGATTGTTGGCAAAGACGGCAGCAGAG
CTGGCACATAGTGTCTGTCAGGATGAGATGCCGGAGGGGGTACGGCGGGA
GGCCGATCAAGTAAGGGGGCAGATTGCAAGGTTGGAAGAAGAGCATTTGA
AGCTGATGGAGGCATTGAGAGAGGAGGAGGAGATGGCACGACAGATGAGA
GGGAGGAATCAGGGGTTATTGCAGGAGCAGAAGCAGCACGTGAGTCATTT
GGCTAGTCTCCGGAAGGCAATTAGTAAGGCCAAGACGGCGTTAGACACCG
AAGTGGCTGATTTGGAAGCGCAAATAAACGATTTATCTTTTTTCTTGCGG
ACGAAGACGGCGGTGCAAGAATCCGAGTTGGAAGGGGGTGGGGTAATGAT
TGGGCATACGGTGACGGCGGCAGCGCCGAGAGGGGGGAGGGGGGGAAGGA
GGAGGAAGGGTGGGGGCAAGTAA

Coding sequence (CDS) from alignment at scaffold_26:162615..164387+

>mRNA_8544 ID=mRNA_8544|Name=jgi.p|Nanoce1779_2|532709|organism=Nannochloropsis oceanica|type=CDS|length=3384bp|location=Sequence derived from alignment at scaffold_26:162615..164387+ (Nannochloropsis oceanica)
ATGGTTAATGAACCACGAAGCGACGCGTTGCTTTGCTGTCTGAAGAGCCT
GGTGGACGACGCCGGGCCTGCAGACGCTGCTGCAGCAACTGGCGCTCGTT
TTGGTGGTGAGAGTGGTTATCCGAGTTTAGACGAATTGTCGCAGCTGGGC
ACGGTGCAGGTGCAAGGGCCGGGGGGAGGGAGCGTCAGCAGTGCACGTTG
CCTTGCGCTAGGCCCGCCTGCAGACGCGCTGGCTTTGTTAAGTTCCCTTG
TCTTGTTTGTGGGTAAGGTGGAGGAAGGGAAGGAGGAGAAGAGGGCGTAT
GTCATGGAGAATGAGGGCGGGGGAGGGGTGGAGTCCAATGAAGTGGGTTC
GATGGATAACAGCAATAGCTGCAGCAGTAACGAGGTCAGCAGCAGTCGCA
GCGCGATCGAGGAAGAGGGGGAGGGAGGGTGGGAGGTTGACGGATCCATG
GCTCTTTTTTCGCAGGGGCTGGACTCCTACTTGGCAGAATTGCCGACGTG
CTTGCAATGTCTCAACCGTCTCGATCCTGTTGCCGTAGGGGTAGCCCTAG
GTATCCCCCCTCTTCCCGGCACCGCTGCTGCTGATGATGCTGCTGATGCT
GCTGCTGCAGCTAGAATTGTTACTGCGTCCTTCCTTGACGATAGACATAG
CAGCAACAATGTGACCGTGAAAAGTTATATCTGCAGTGGTGTTGCATCCT
CCTCATGCGCAACGTGTCAAAAAGTCCAAATCTACGCCAACCTTAAGCAA
AAACGAAAACGCACATTACGAGGCTTCGAACGAGGAAGGGAAGGAGGGAG
GGACGGGACACCCACCGCCACCGCCACAAGTACTCTCCACACTCTCACCT
GCAACACGTGCGGAATTCCCGAAAACCTGTGGATCTGCCTGTTGTGTAGT
CACGTGGGGTGTGGGCGCTACACAGCCGAGCACGCCAAAATGCACTTTCA
TCAATCAGGCCATATTTTTTCATTAGAGCTAGCCACGGGGAGAGTGTGGG
ACTACGTTGAAGATGTCTTTGTGCATGCAACGCAGTGTCAAGGCGGAAGG
GGGTGGCGGATGACTGCGGCTGCGATGGGGGGACAGGCAAGGCGGGGGGG
GGAGGACGCGGAGGGAGAGGGGGGAATAAGGGGGCGACGTGGAAGGATGG
AGAAGGGGCCTCAGGGAAAGTTGGATGGATTGGGAGCGGAATATAGTGCG
CTGTTGATGTCTCAGTTGGAGGAACAGAAACATTATTACGAACGATTGTT
GGCAAAGACGGCAGCAGAGCTGGCACATAGTGTCTGTCAGGATGAGATGC
CGGAGGGGGTACGGCGGGAGGCCGATCAAGTAAGGGGGCAGATTGCAAGG
TTGGAAGAAGAGCATTTGAAGCTGATGGAGGCATTGAGAGAGGAGGAGGA
GATGGCACGACAGATGAGAGGGAGGAATCAGGGGTTATTGCAGGAGCAGA
AGCAGCACGTGAGTCATTTGGCTAGTCTCCGGAAGGCAATTAGTAAGGCC
AAGACGGCGTTAGACACCGAAGTGGCTGATTTGGAAGCGCAAATAAACGA
TTTATCTTTTTTCTTGCGGACGAAGACGGCGGTGCAAGAATCCGAGTTGG
AAGGGGGTGGGGTAATGATTGGGCATACGGTGACGGCGGCAGCGCCGAGA
GGGGGGAGGGGGGGAAGGAGGAGGAAGGGTGGGGGCAAGTAAATGGTTAA
TGAACCACGAAGCGACGCGTTGCTTTGCTGTCTGAAGAGCCTGGTGGACG
ACGCCGGGCCTGCAGACGCTGCTGCAGCAACTGGCGCTCGTTTTGGTGGT
GAGAGTGGTTATCCGAGTTTAGACGAATTGTCGCAGCTGGGCACGGTGCA
GGTGCAAGGGCCGGGGGGAGGGAGCGTCAGCAGTGCACGTTGCCTTGCGC
TAGGCCCGCCTGCAGACGCGCTGGCTTTGTTAAGTTCCCTTGTCTTGTTT
GTGGGTAAGGTGGAGGAAGGGAAGGAGGAGAAGAGGGCGTATGTCATGGA
GAATGAGGGCGGGGGAGGGGTGGAGTCCAATGAAGTGGGTTCGATGGATA
ACAGCAATAGCTGCAGCAGTAACGAGGTCAGCAGCAGTCGCAGCGCGATC
GAGGAAGAGGGGGAGGGAGGGTGGGAGGTTGACGGATCCATGGCTCTTTT
TTCGCAGGGGCTGGACTCCTACTTGGCAGAATTGCCGACGTGCTTGCAAT
GTCTCAACCGTCTCGATCCTGTTGCCGTAGGGGTAGCCCTAGGTATCCCC
CCTCTTCCCGGCACCGCTGCTGCTGATGATGCTGCTGATGCTGCTGCTGC
AGCTAGAATTGTTACTGCGTCCTTCCTTGACGATAGACATAGCAGCAACA
ATGTGACCGTGAAAAGTTATATCTGCAGTGGTGTTGCATCCTCCTCATGC
GCAACGTGTCAAAAAGTCCAAATCTACGCCAACCTTAAGCAAAAACGAAA
ACGCACATTACGAGGCTTCGAACGAGGAAGGGAAGGAGGGAGGGACGGGA
CACCCACCGCCACCGCCACAAGTACTCTCCACACTCTCACCTGCAACACG
TGCGGAATTCCCGAAAACCTGTGGATCTGCCTGTTGTGTAGTCACGTGGG
GTGTGGGCGCTACACAGCCGAGCACGCCAAAATGCACTTTCATCAATCAG
GCCATATTTTTTCATTAGAGCTAGCCACGGGGAGAGTGTGGGACTACGTT
GAAGATGTCTTTGTGCATGCAACGCAGTGTCAAGGCGGAAGGGGGTGGCG
GATGACTGCGGCTGCGATGGGGGGACAGGCAAGGCGGGGGGGGGAGGACG
CGGAGGGAGAGGGGGGAATAAGGGGGCGACGTGGAAGGATGGAGAAGGGG
CCTCAGGGAAAGTTGGATGGATTGGGAGCGGAATATAGTGCGCTGTTGAT
GTCTCAGTTGGAGGAACAGAAACATTATTACGAACGATTGTTGGCAAAGA
CGGCAGCAGAGCTGGCACATAGTGTCTGTCAGGATGAGATGCCGGAGGGG
GTACGGCGGGAGGCCGATCAAGTAAGGGGGCAGATTGCAAGGTTGGAAGA
AGAGCATTTGAAGCTGATGGAGGCATTGAGAGAGGAGGAGGAGATGGCAC
GACAGATGAGAGGGAGGAATCAGGGGTTATTGCAGGAGCAGAAGCAGCAC
GTGAGTCATTTGGCTAGTCTCCGGAAGGCAATTAGTAAGGCCAAGACGGC
GTTAGACACCGAAGTGGCTGATTTGGAAGCGCAAATAAACGATTTATCTT
TTTTCTTGCGGACGAAGACGGCGGTGCAAGAATCCGAGTTGGAAGGGGGT
GGGGTAATGATTGGGCATACGGTGACGGCGGCAGCGCCGAGAGGGGGGAG
GGGGGGAAGGAGGAGGAAGGGTGGGGGCAAGTAA

Synonyms

Publications