jgi.p|Nanoce1779_2|603041, mRNA_8542 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603041
Unique NamemRNA_8542
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1127
Alignment locationscaffold_26:160164..161426 +

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Properties
Property NameValue
TranscriptId603127
TrackFilteredModels2
ProteinId603041
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:160164..161426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603041gene_8542Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603041mRNA_8542-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8542CDS_8542Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8542 ID=mRNA_8542|Name=jgi.p|Nanoce1779_2|603041|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp
AGCAGCAGCAGCAGCAGCAGCAGCGAGATTCCTCATGCTCAGCCCGCCCA
GAGGAAGGGGCCCGGCTACTATTGCAATCCCGTCTACGGAAAACCTTTGG
GTTGGAGTTAGAGAAGGTCTTGTTGGTGAGCTTGCGGGATCTATCTCGTT
TTTTCAACGACACGACTGTGATGGAGCAGTACCAGGCTGAGGTGGCCACC
TACTTGCTTAATCAGGGTGAAAACAGAGGAGGTGGAGGCGGAGGACCAAC
AGCAGCAAGAAGAACAGAAAATAGGAGGTTGTTGGGGAATAGATGGATGG
TCCAAGCTGTGGAACGTCGGTTCAAGGCTATCTTACGGCCCTTGTCTGCA
GTGGGGTGGGGACTGTCTCTTCAGAAGGAGTTAAAAGACTTCTTTGAGGA
CGTTTTGGTGAAAGTGACTCTACCTTTGCGAGACCTAAGGCTATCGCGTC
GTGATCTGTGTCATTTATTTACGGCGCTAATCAATAGCTTCCACTCGATC
CCGGTGTTGAGGGAGGGGAAGAGTAAGAGCATTTCGCAAAAGCGACTAAA
TCAGTATGCCGTTTCCTGGGCGCGATTCCTAAGCGGAATGCTCCTGTGCA
TCCTCCACACTTACCCCATCTGGTGCCTACCCTCACCTTCGCCCATAATA
TCGACCGTGCTAAAAGCCCAGGGGGATAGGAGTAAAAGATGAAATCAACA
TTTGCGAAAGAAAAAGCACACATGTACAGTCAATGTATTTGGCCCTTCGC
CTGCGGGCCAGCAGGCATTGTATTCACATCCTGCCTCTTTCCCTTTGTAA
AGAGGGCGACTTACTGAGGCTCTGAGCCCACCCCTTTAATGTTTTTGTAC
TTCTCTTGGGTCACTTTGTGAAACACATCCATCAGTATGGGCATGCGTTT
CGTCAACTTCTCCCGTGCCTCCTCGCTCGTGGTCAGTGTGTAGTACAGCA
TACCCGTACCAACGAAAGCCATCGCTTCAGCCACAATGAGGGAGCGCCCA
AAGCGGCCCGTCAGTAAGGCCTTGTACTTGGGTGTTTTGATGGTTTGCTG
TTGTGCAGGCGGCGGTCGTGGTGGTGGCGGCATGATTGTGAAGATGACAG
GCGGGGGTGAGGAGGTTGGTTGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|603041

>mRNA_8542-protein ID=mRNA_8542-protein|Name=jgi.p|Nanoce1779_2|603041|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MEQYQAEVATYLLNQGENRGGGGGGPTAARRTENRRLLGNRWMVQAVERR
FKAILRPLSAVGWGLSLQKELKDFFEDVLVKVTLPLRDLRLSRRDLCHLF
TALINSFHSIPVLREGKSKSISQKRLNQYAVSWARFLSGMLLCILHTYPI
WCLPSPSPIISTVLKAQGDRSKR*
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mRNA from alignment at scaffold_26:160164..161426+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8542 ID=mRNA_8542|Name=jgi.p|Nanoce1779_2|603041|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp|location=Sequence derived from alignment at scaffold_26:160164..161426+ (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCGAGATTCCTCATGCTCAGCCCGCCCA
GAGGAAGGGGCCCGGCTACTATTGCAATCCCGTCTACGGAAAACCTTTGG
GTTGGAGTTAGAGAAGGTCTTGTTGGTGAGCTTGCGGGATCTATCTCGTT
TTTTCAACGACACGACTGTGATGGAGCAGTACCAGGCTGAGGTGGCCACC
TACTTGCTTAATCAGGGTGAAAACAGAGGAGGTGGAGGCGGAGGACCAAC
AGCAGCAAGAAGAACAGAAAATAGGAGGTTGTTGGGGAATAGATGGATGG
TCCAAGCTGTGGAACGTCGGTTCAAGGCTATCTTACGGCCCTTGTCTGCA
GTGGGGTGGGGACTGTCTCTTCAGAAGGAGTTAAAAGACTTCTTTGAGGA
CGTTTTGGTGAAAGTGACTCTACCTTTGCGAGACCTAAGGCTATCGCGTC
GTGATCTGTGTCATTTATTTACGGCGCTAATCAATAGCTTCCACTCGATC
CCGGTGTTGAGGGAGGGGAAGAGTAAGAGCATTTCGCAAAAGTAAGAGGG
GGTTGAAAGGGTAGCCGAGAGAGGGGAGATTAGGGGGGCAGATTTATAGT
GGGAAAGAAGGAGTTTATTAGTTGACGAATAATTTTTAAGACTCACGTCA
CCTCTCATTCCAACCACACATCCGCAGGCGACTAAATCAGTATGCCGTTT
CCTGGGCGCGATTCCTAAGCGGAATGCTCCTGTGCATCCTCCACACTTAC
CCCATCTGGTGCCTACCCTCACCTTCGCCCATAATATCGACCGTGCTAAA
AGCCCAGGGGGATAGGAGTAAAAGATGAAATCAACATTTGCGAAAGAAAA
AGCACACATGTACAGTCAATGTATTTGGCCCTTCGCCTGCGGGCCAGCAG
GCATTGTATTCACATCCTGCCTCTTTCCCTTTGTAAAGAGGGCGACTTAC
TGAGGCTCTGAGCCCACCCCTTTAATGTTTTTGTACTTCTCTTGGGTCAC
TTTGTGAAACACATCCATCAGTATGGGCATGCGTTTCGTCAACTTCTCCC
GTGCCTCCTCGCTCGTGGTCAGTGTGTAGTACAGCATACCCGTACCAACG
AAAGCCATCGCTTCAGCCACAATGAGGGAGCGCCCAAAGCGGCCCGTCAG
TAAGGCCTTGTACTTGGGTGTTTTGATGGTTTGCTGTTGTGCAGGCGGCG
GTCGTGGTGGTGGCGGCATGATTGTGAAGATGACAGGCGGGGGTGAGGAG
GTTGGTTGCCTGT
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Coding sequence (CDS) from alignment at scaffold_26:160164..161426+

>mRNA_8542 ID=mRNA_8542|Name=jgi.p|Nanoce1779_2|603041|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_26:160164..161426+ (Nannochloropsis oceanica)
ATGGAGCAGTACCAGGCTGAGGTGGCCACCTACTTGCTTAATCAGGGTGA
AAACAGAGGAGGTGGAGGCGGAGGACCAACAGCAGCAAGAAGAACAGAAA
ATAGGAGGTTGTTGGGGAATAGATGGATGGTCCAAGCTGTGGAACGTCGG
TTCAAGGCTATCTTACGGCCCTTGTCTGCAGTGGGGTGGGGACTGTCTCT
TCAGAAGGAGTTAAAAGACTTCTTTGAGGACGTTTTGGTGAAAGTGACTC
TACCTTTGCGAGACCTAAGGCTATCGCGTCGTGATCTGTGTCATTTATTT
ACGGCGCTAATCAATAGCTTCCACTCGATCCCGGTGTTGAGGGAGGGGAA
GAGTAAGAGCATTTCGCAAAAGCGACTAAATCAGTATGCCGTTTCCTGGG
CGCGATTCCTAAGCGGAATGCTCCTGTGCATCCTCCACACTTACCCCATC
TGGTGCCTACCCTCACCTTCGCCCATAATATCGACCGTGCTAAAAGCCCA
GGGGGATAGGAGTAAAAGATGAATGGAGCAGTACCAGGCTGAGGTGGCCA
CCTACTTGCTTAATCAGGGTGAAAACAGAGGAGGTGGAGGCGGAGGACCA
ACAGCAGCAAGAAGAACAGAAAATAGGAGGTTGTTGGGGAATAGATGGAT
GGTCCAAGCTGTGGAACGTCGGTTCAAGGCTATCTTACGGCCCTTGTCTG
CAGTGGGGTGGGGACTGTCTCTTCAGAAGGAGTTAAAAGACTTCTTTGAG
GACGTTTTGGTGAAAGTGACTCTACCTTTGCGAGACCTAAGGCTATCGCG
TCGTGATCTGTGTCATTTATTTACGGCGCTAATCAATAGCTTCCACTCGA
TCCCGGTGTTGAGGGAGGGGAAGAGTAAGAGCATTTCGCAAAAGCGACTA
AATCAGTATGCCGTTTCCTGGGCGCGATTCCTAAGCGGAATGCTCCTGTG
CATCCTCCACACTTACCCCATCTGGTGCCTACCCTCACCTTCGCCCATAA
TATCGACCGTGCTAAAAGCCCAGGGGGATAGGAGTAAAAGATGA
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Synonyms
Publications