jgi.p|Nanoce1779_2|603035, mRNA_8541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603035
Unique NamemRNA_8541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length874
Alignment locationscaffold_26:156811..158153 -

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Properties
Property NameValue
TranscriptId603121
TrackFilteredModels2
ProteinId603035
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:156811..158153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603035gene_8541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603035mRNA_8541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8541CDS_8541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8541 ID=mRNA_8541|Name=jgi.p|Nanoce1779_2|603035|organism=Nannochloropsis oceanica|type=mRNA|length=874bp
TTTTTTTTTCGAAACAAGTTCTCTTTCTTTTGCTTTTTTCAAGTGGATTG
GATGGAGCCTTTACACGGTGGTGGACAGTGGGAAACGCGAACTCTCCGTG
TCTAATTGAACGAAAGGGAGCGGAGCGATGACACACTTTCAGAGACACGG
ACAGACGATATGCACACAAAATAATTCTCTCATTCATCTATCAGTGCTTT
CGATTCTCCTGACAGACGATATGCACACAAAATAATTCTCTCATTCATCT
ATCAGTGCTTTCGATTCTCCTGAATAATGAATTGAACTAAATAGCCCAGC
GCAATTACCTGGCCAACCAAAAGCAACATGCAGAGCAGGTTCCGCCCGAA
GCTTCCCCACCGCTTCCCTTTCCTCGCCGCGGCCTTGAGCCGTTTGTTGA
CCTCACCCATGTCCTCCCGATGGTCTGCCAGTTGCTCTGCGATGGGTTCC
AGCTCGGCATTTTGTAGCTTGACGCGCTCATTCATGTCCACGACAATCTG
CTTGAGTTGGTTAACACCGTCGCCCACACGAGTCAATTCAATTTGCTCCA
TCTCCATATCCAGCCGCTCCACCTCGGTAAGGTACAGCTTTGACTCCTCG
GGCATATCTTTGTTGTTCTGGGCCACTCCGCCGCCCACGCCTATGTGCGG
AGGGGAGAAGAGGGATCGATCTTTCAGCCAAGGAGGCAGGAGGCTTTGGG
TCGTGCAGGGGGCAAAGCACACCGACAAGAGGGCCCGAAACAAACACATC
CAGCCATTACTCGCACAACGAACGACTGACCTATGTGGCGGCTCTCGGTG
CTGGGCTGTGCCTTGGGCATCTAATACACTGGAGGGAATGCAGTGACGTT
ATGCTGCACGAGCTCCTGTCGCTG
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protein sequence of jgi.p|Nanoce1779_2|603035

>mRNA_8541-protein ID=mRNA_8541-protein|Name=jgi.p|Nanoce1779_2|603035|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MQSRFRPKLPHRFPFLAAALSRLLTSPMSSRWSASCSAMGSSSAFCSLTR
SFMSTTICLSWLTPSPTRVNSICSISISSRSTSVRYSFDSSGISLLFWAT
PPPTPMCGGEKRDRSFSQGGRRLWVVQGAKHTDKRARNKHIQPLLAQRTT
DLCGGSRCWAVPWASNTLEGMQ*
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mRNA from alignment at scaffold_26:156811..158153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8541 ID=mRNA_8541|Name=jgi.p|Nanoce1779_2|603035|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp|location=Sequence derived from alignment at scaffold_26:156811..158153- (Nannochloropsis oceanica)
TTTTTTTTTCGAAACAAGTTCTCTTTCTTTTGCTTTTTTCAAGTGGATTG
GATGGAGCCTTTACACGGTGGTGGACAGTGGGAAACGCGAACTCTCCGTG
TCTAATTGAACGAAAGGGAGCGGAGCGATGACACACTTTCAGAGACACGG
ACAGACGATATGCACACAAAATAATTCTCTCATTCATCTATCAGTGCTTT
CGATTCTCCTGACAGACGATATGCACACAAAATAATTCTCTCATTCATCT
ATCAGTGCTTTCGATTCTCCTGAATAATGAATTGAACTAAATAGCCCAGC
GCAATTACCTGGCCAACCAAAAGCAACATGCAGAGCAGGTTCCGCCCGAA
GCTTCCCCACCGCTTCCCTTTCCTCGCCGCGGCCTTGAGCCGTTTGTTGA
CCTCACCCATGTCCTCCCGATGGTCTGCCAGTTGCTCTGCGATGGGTTCC
AGCTCGGCATTTTGTAGCTTGACGCGCTGTAGATTTTGATGGGAAAGAGG
GAGGGAGGTGGATAAGAGAGGCAACGGAAAGGGAGGGGTTGGTGAGAGGG
AGGATCGATTCGATGCAACATTCCAAATGGTACCTCATTCATGTCCACGA
CAATCTGCTTGAGTTGGTTAACACCGTCGCCCACACGAGTCAATTCAATT
TGCTCCTGTGTAACAAGTGGGAGAAGAGGCAAAGGGAGGGATGGATGACG
TTTGCTTCCTTTTGAGTCACAAACCGAAGACGCGGCCAGTATGATATGGC
AACGACGAGGAAAAATTACCATGGAGACACTAAACAAAGCACACGCGCTG
TCGTAGGTAGACAAGCACCACCCTTCCTTAAGCCTTTGTCAACCAGACCC
GACCCTTGACGTCCGACCGCCCTAACCAACCTCAACAGCCACCTACCATC
TCCATATCCAGCCGCTCCACCTCGGTAAGGTACAGCTTTGACTCCTCGGG
CATATCTTTGTTGTTCTGGGCCACTCCGCCGCCCACGCCTATGTGCGGAG
GGGAGAAGAGGGATCGATCTTTCAGCCAAGGAGGCAGGAGGCTTTGGGTC
GTGCAGGGGGCAAAGCACACCGACAAGAGGGCCCGAAACAAACACATCCA
GCCATTACTCGCACAACGAACGACTGACCTATGTGGCGGCTCTCGGTGCT
GGGCTGTGCCTGTGTTGGAGTGAGGGGAAAATACGTGACGATAAAGCCTG
TGCATCAACAGCAGCAGCAGAGCCATACCGAGCGGTGCTTCGTGCTCCTC
CCTCCCATGTCTCCCAAGGCTCTCACTCACCTTGGGCATCTAATACACTG
GAGGGAATGCAGTGACGTTATGCTGCACGAGCTCCTGTCGCTG
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Coding sequence (CDS) from alignment at scaffold_26:156811..158153-

>mRNA_8541 ID=mRNA_8541|Name=jgi.p|Nanoce1779_2|603035|organism=Nannochloropsis oceanica|type=CDS|length=2076bp|location=Sequence derived from alignment at scaffold_26:156811..158153- (Nannochloropsis oceanica)
CTTGGGCATCTAATACACTGGAGGGAATGCAGTGACATCTCCATATCCAG
CCGCTCCACCTCGGTAAGGTACAGCTTTGACTCCTCGGGCATATCTTTGT
TGTTCTGGGCCACTCCGCCGCCCACGCCTATGTGCGGAGGGGAGAAGAGG
GATCGATCTTTCAGCCAAGGAGGCAGGAGGCTTTGGGTCGTGCAGGGGGC
AAAGCACACCGACAAGAGGGCCCGAAACAAACACATCCAGCCATTACTCG
CACAACGAACGACTGACCTATGTGGCGGCTCTCGGTGCTGGGCTGTGCCT
CATTCATGTCCACGACAATCTGCTTGAGTTGGTTAACACCGTCGCCCACA
CGAGTCAATTCAATTTGCTCATGCAGAGCAGGTTCCGCCCGAAGCTTCCC
CACCGCTTCCCTTTCCTCGCCGCGGCCTTGAGCCGTTTGTTGACCTCACC
CATGTCCTCCCGATGGTCTGCCAGTTGCTCTGCGATGGGTTCCAGCTCGG
CATTTTGTAGCTTGACGCGCTTGGGCATCTAATACACTGGAGGGAATGCA
GTGACATCTCCATATCCAGCCGCTCCACCTCGGTAAGGTACAGCTTTGAC
TCCTCGGGCATATCTTTGTTGTTCTGGGCCACTCCGCCGCCCACGCCTAT
GTGCGGAGGGGAGAAGAGGGATCGATCTTTCAGCCAAGGAGGCAGGAGGC
TTTGGGTCGTGCAGGGGGCAAAGCACACCGACAAGAGGGCCCGAAACAAA
CACATCCAGCCATTACTCGCACAACGAACGACTGACCTATGTGGCGGCTC
TCGGTGCTGGGCTGTGCCTCATTCATGTCCACGACAATCTGCTTGAGTTG
GTTAACACCGTCGCCCACACGAGTCAATTCAATTTGCTCATGCAGAGCAG
GTTCCGCCCGAAGCTTCCCCACCGCTTCCCTTTCCTCGCCGCGGCCTTGA
GCCGTTTGTTGACCTCACCCATGTCCTCCCGATGGTCTGCCAGTTGCTCT
GCGATGGGTTCCAGCTCGGCATTTTGTAGCTTGACGCGCTTGGGCATCTA
ATACACTGGAGGGAATGCAGTGACATCTCCATATCCAGCCGCTCCACCTC
GGTAAGGTACAGCTTTGACTCCTCGGGCATATCTTTGTTGTTCTGGGCCA
CTCCGCCGCCCACGCCTATGTGCGGAGGGGAGAAGAGGGATCGATCTTTC
AGCCAAGGAGGCAGGAGGCTTTGGGTCGTGCAGGGGGCAAAGCACACCGA
CAAGAGGGCCCGAAACAAACACATCCAGCCATTACTCGCACAACGAACGA
CTGACCTATGTGGCGGCTCTCGGTGCTGGGCTGTGCCTCATTCATGTCCA
CGACAATCTGCTTGAGTTGGTTAACACCGTCGCCCACACGAGTCAATTCA
ATTTGCTCATGCAGAGCAGGTTCCGCCCGAAGCTTCCCCACCGCTTCCCT
TTCCTCGCCGCGGCCTTGAGCCGTTTGTTGACCTCACCCATGTCCTCCCG
ATGGTCTGCCAGTTGCTCTGCGATGGGTTCCAGCTCGGCATTTTGTAGCT
TGACGCGCTTGGGCATCTAATACACTGGAGGGAATGCAGTGACATCTCCA
TATCCAGCCGCTCCACCTCGGTAAGGTACAGCTTTGACTCCTCGGGCATA
TCTTTGTTGTTCTGGGCCACTCCGCCGCCCACGCCTATGTGCGGAGGGGA
GAAGAGGGATCGATCTTTCAGCCAAGGAGGCAGGAGGCTTTGGGTCGTGC
AGGGGGCAAAGCACACCGACAAGAGGGCCCGAAACAAACACATCCAGCCA
TTACTCGCACAACGAACGACTGACCTATGTGGCGGCTCTCGGTGCTGGGC
TGTGCCTCATTCATGTCCACGACAATCTGCTTGAGTTGGTTAACACCGTC
GCCCACACGAGTCAATTCAATTTGCTCATGCAGAGCAGGTTCCGCCCGAA
GCTTCCCCACCGCTTCCCTTTCCTCGCCGCGGCCTTGAGCCGTTTGTTGA
CCTCACCCATGTCCTCCCGATGGTCTGCCAGTTGCTCTGCGATGGGTTCC
AGCTCGGCATTTTGTAGCTTGACGCG
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Synonyms
Publications