jgi.p|Nanoce1779_2|603021, mRNA_8540 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603021
Unique Name	mRNA_8540
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1866
Alignment location	scaffold_26:154454..156319 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603107
Track	FilteredModels2
ProteinId	603021

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:154454..156319 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603021	gene_8540	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603021	mRNA_8540-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8540	CDS_8540	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:154454..156319+
coding sequence from alignment at scaffold_26:154454..156319+

mRNA sequence

>mRNA_8540 ID=mRNA_8540|Name=jgi.p|Nanoce1779_2|603021|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp
GGAGGAGGAGGAGGAGGGGGAGAAGACGGTAGCGGTAGCAGTGGTGGAGG
ACGCAAAGGATGGGAAGGGTGGGAGCACAGAGGGGCACATCTGGCGGTAG
AGATCATCGCGGAGGGAGCGAATGATGGAGGTAACCGAGTCGGCCGTGAC
GCGGAACCAAGGCCTAGCCCCCGCGGTCTTTCTGTTCGCCCGATGCGCTG
GATCCCCACCCTTGGTCGCCATCCTTACCGGCAAATGGAGCAAGTCCAAG
TGGCAGACATTCACGGCCACGGCCAGCGTCAAGCCGTACTGGACGACCCC
GTGGCCCACCCTGGGCCCGCCCACCATCATCTCTCCCACTCGCTGGCACC
CTACCGCCACATCCACCCCGCAATCCAGTCGCTCGGTCACCCGCAGCACA
ACCTCCGTCTTCCCGCCCACCAGCCAGTCCGTAAACTGGTGCCAACTCTC
AGCACCGTGCACCCGCTGGGCGTACGCATCCGCCTGCCGCATGTTCTCCC
CATTGTCATGCAAGACGAAAATCCAAACCTTGAAGCCTTCATTCTTTCTC
CTGCTCTTCAGCACGGCTACGGCGTCCTTGCGGATGAGAGAAAGGAAGTC
TTCCTTGCGTCGACCGCCGGCAAACATGATGTTGAGAAAGGACAGACAGC
CGTACTCGTTAAGGGTGCGGGTAAACCAGAGCCGAGCTGCCTCCGATTCG
TAATCGAACACCTCGTGATCAAACTCCTCCTCTCGACCTCCCTCCTTCCC
TTCCTTACTCTTTTTCTTGCTACGCTTATTCTTCTTCTTGTCGTTGTCAT
CGTCGTTGTCGTTGGTGGTGGTGGTCGTTGTTGTGGGGTCGGTGTTGTTG
CTGGGAATGGGGTTGGAGGTCACGGCAGCCGTAGCCGCTGCCTCCCCCGT
CACTTTCCGCCTCCCTCTGCCACTGCTCTTCTTCATCTCACTCCATTCAA
TGTACAAGGTAGGCAACGGCCCCGAGACCCCGTCCACGGAGTAAATAGCC
CACCCGGTCTTTCCTTCTCTCATTCGCGCAATCTGCCCATCATGCATCCG
GACAAAAAAGTCTCTAGTCAGGCTAGGGAATTTTACTTGCTCCCCGAGCA
GCTCCACAAATACCTTCAAATTAACTCGATCCACCTGGACCTCCCTTATC
TCCGTCAAAGCCTCCTCCACCTCTGCTTTCTGCGCCGGTGGCACGTCAGC
CATCCCTGCTATGCGCCCTGTGCCGTAGGTCACCTCCCCCACGTCCGTCA
CGCCCACGGAGACGTCCTGGCCGGGGCGGAGGAAGTGAAGGAAGGGGGAG
CGGTATTGGTTGTCCGCAAACAGAGTTTGATTGCCGCGGTAACCTTCGGG
GGACATGGACGCGGCGCGACCTCGGGCTTTGTTCCCGTCTTTTGTGAGGG
GGTTGCCCTGGAAGAAAAGAGGCACGTCTTCTTGGTTGAGACGGACGAGG
GTTTCTAAAGCAGCGACGCGCGTCGCTGTATCAGCATGCGCAAGCAAGTC
TAGATTTAGGACAGGTAATTGCTTAAAACGATTGTGTGGGGTGACATCAT
CCCAGGATGCATACGGATTCAGCTTTTTGCACAAATCACGCAAGTCCCAC
CCCTCTCCATCCGTACCCCGGCCCCCTCTCCCTCCTCCTCCACGTCCCCC
TGTGACGGCCTTTGGCGGTACGGCCACGGATTCGATAAAGTGGATTGAGC
CTCGGCGCTTCGCCTTGGCGTATTTTATCAGGGCCGCCTTCACTTAAACG
GCCCAGGGCGAGGAACGTCTCGACTTCCGTGCTTCAATTCGCGAGGAGGA
GGAGAAGGAGGAGGTGGATGAGGAGGAGGAGGAAGATGGAGGAGAAGAAG
AAGAAGAAGAAGAAGA

protein sequence of jgi.p|Nanoce1779_2|603021

>mRNA_8540-protein ID=mRNA_8540-protein|Name=jgi.p|Nanoce1779_2|603021|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MRWIPTLGRHPYRQMEQVQVADIHGHGQRQAVLDDPVAHPGPAHHHLSHS
LAPYRHIHPAIQSLGHPQHNLRLPAHQPVRKLVPTLSTVHPLGVRIRLPH
VLPIVMQDENPNLEAFILSPALQHGYGVLADERKEVFLASTAGKHDVEKG
QTAVLVKGAGKPEPSCLRFVIEHLVIKLLLSTSLLPFLTLFLATLILLLV
VVIVVVVGGGGRCCGVGVVAGNGVGGHGSRSRCLPRHFPPPSATALLHLT
PFNVQGRQRPRDPVHGVNSPPGLSFSHSRNLPIMHPDKKVSSQAREFYLL
PEQLHKYLQINSIHLDLPYLRQSLLHLCFLRRWHVSHPCYAPCAVGHLPH
VRHAHGDVLAGAEEVKEGGAVLVVRKQSLIAAVTFGGHGRGATSGFVPVF
CEGVALEEKRHVFLVETDEGF*

mRNA from alignment at scaffold_26:154454..156319+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8540 ID=mRNA_8540|Name=jgi.p|Nanoce1779_2|603021|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_26:154454..156319+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGGGGAGAAGACGGTAGCGGTAGCAGTGGTGGAGG
ACGCAAAGGATGGGAAGGGTGGGAGCACAGAGGGGCACATCTGGCGGTAG
AGATCATCGCGGAGGGAGCGAATGATGGAGGTAACCGAGTCGGCCGTGAC
GCGGAACCAAGGCCTAGCCCCCGCGGTCTTTCTGTTCGCCCGATGCGCTG
GATCCCCACCCTTGGTCGCCATCCTTACCGGCAAATGGAGCAAGTCCAAG
TGGCAGACATTCACGGCCACGGCCAGCGTCAAGCCGTACTGGACGACCCC
GTGGCCCACCCTGGGCCCGCCCACCATCATCTCTCCCACTCGCTGGCACC
CTACCGCCACATCCACCCCGCAATCCAGTCGCTCGGTCACCCGCAGCACA
ACCTCCGTCTTCCCGCCCACCAGCCAGTCCGTAAACTGGTGCCAACTCTC
AGCACCGTGCACCCGCTGGGCGTACGCATCCGCCTGCCGCATGTTCTCCC
CATTGTCATGCAAGACGAAAATCCAAACCTTGAAGCCTTCATTCTTTCTC
CTGCTCTTCAGCACGGCTACGGCGTCCTTGCGGATGAGAGAAAGGAAGTC
TTCCTTGCGTCGACCGCCGGCAAACATGATGTTGAGAAAGGACAGACAGC
CGTACTCGTTAAGGGTGCGGGTAAACCAGAGCCGAGCTGCCTCCGATTCG
TAATCGAACACCTCGTGATCAAACTCCTCCTCTCGACCTCCCTCCTTCCC
TTCCTTACTCTTTTTCTTGCTACGCTTATTCTTCTTCTTGTCGTTGTCAT
CGTCGTTGTCGTTGGTGGTGGTGGTCGTTGTTGTGGGGTCGGTGTTGTTG
CTGGGAATGGGGTTGGAGGTCACGGCAGCCGTAGCCGCTGCCTCCCCCGT
CACTTTCCGCCTCCCTCTGCCACTGCTCTTCTTCATCTCACTCCATTCAA
TGTACAAGGTAGGCAACGGCCCCGAGACCCCGTCCACGGAGTAAATAGCC
CACCCGGTCTTTCCTTCTCTCATTCGCGCAATCTGCCCATCATGCATCCG
GACAAAAAAGTCTCTAGTCAGGCTAGGGAATTTTACTTGCTCCCCGAGCA
GCTCCACAAATACCTTCAAATTAACTCGATCCACCTGGACCTCCCTTATC
TCCGTCAAAGCCTCCTCCACCTCTGCTTTCTGCGCCGGTGGCACGTCAGC
CATCCCTGCTATGCGCCCTGTGCCGTAGGTCACCTCCCCCACGTCCGTCA
CGCCCACGGAGACGTCCTGGCCGGGGCGGAGGAAGTGAAGGAAGGGGGAG
CGGTATTGGTTGTCCGCAAACAGAGTTTGATTGCCGCGGTAACCTTCGGG
GGACATGGACGCGGCGCGACCTCGGGCTTTGTTCCCGTCTTTTGTGAGGG
GGTTGCCCTGGAAGAAAAGAGGCACGTCTTCTTGGTTGAGACGGACGAGG
GTTTCTAAAGCAGCGACGCGCGTCGCTGTATCAGCATGCGCAAGCAAGTC
TAGATTTAGGACAGGTAATTGCTTAAAACGATTGTGTGGGGTGACATCAT
CCCAGGATGCATACGGATTCAGCTTTTTGCACAAATCACGCAAGTCCCAC
CCCTCTCCATCCGTACCCCGGCCCCCTCTCCCTCCTCCTCCACGTCCCCC
TGTGACGGCCTTTGGCGGTACGGCCACGGATTCGATAAAGTGGATTGAGC
CTCGGCGCTTCGCCTTGGCGTATTTTATCAGGGCCGCCTTCACTTAAACG
GCCCAGGGCGAGGAACGTCTCGACTTCCGTGCTTCAATTCGCGAGGAGGA
GGAGAAGGAGGAGGTGGATGAGGAGGAGGAGGAAGATGGAGGAGAAGAAG
AAGAAGAAGAAGAAGA

Coding sequence (CDS) from alignment at scaffold_26:154454..156319+

>mRNA_8540 ID=mRNA_8540|Name=jgi.p|Nanoce1779_2|603021|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_26:154454..156319+ (Nannochloropsis oceanica)
ATGCGCTGGATCCCCACCCTTGGTCGCCATCCTTACCGGCAAATGGAGCA
AGTCCAAGTGGCAGACATTCACGGCCACGGCCAGCGTCAAGCCGTACTGG
ACGACCCCGTGGCCCACCCTGGGCCCGCCCACCATCATCTCTCCCACTCG
CTGGCACCCTACCGCCACATCCACCCCGCAATCCAGTCGCTCGGTCACCC
GCAGCACAACCTCCGTCTTCCCGCCCACCAGCCAGTCCGTAAACTGGTGC
CAACTCTCAGCACCGTGCACCCGCTGGGCGTACGCATCCGCCTGCCGCAT
GTTCTCCCCATTGTCATGCAAGACGAAAATCCAAACCTTGAAGCCTTCAT
TCTTTCTCCTGCTCTTCAGCACGGCTACGGCGTCCTTGCGGATGAGAGAA
AGGAAGTCTTCCTTGCGTCGACCGCCGGCAAACATGATGTTGAGAAAGGA
CAGACAGCCGTACTCGTTAAGGGTGCGGGTAAACCAGAGCCGAGCTGCCT
CCGATTCGTAATCGAACACCTCGTGATCAAACTCCTCCTCTCGACCTCCC
TCCTTCCCTTCCTTACTCTTTTTCTTGCTACGCTTATTCTTCTTCTTGTC
GTTGTCATCGTCGTTGTCGTTGGTGGTGGTGGTCGTTGTTGTGGGGTCGG
TGTTGTTGCTGGGAATGGGGTTGGAGGTCACGGCAGCCGTAGCCGCTGCC
TCCCCCGTCACTTTCCGCCTCCCTCTGCCACTGCTCTTCTTCATCTCACT
CCATTCAATGTACAAGGTAGGCAACGGCCCCGAGACCCCGTCCACGGAGT
AAATAGCCCACCCGGTCTTTCCTTCTCTCATTCGCGCAATCTGCCCATCA
TGCATCCGGACAAAAAAGTCTCTAGTCAGGCTAGGGAATTTTACTTGCTC
CCCGAGCAGCTCCACAAATACCTTCAAATTAACTCGATCCACCTGGACCT
CCCTTATCTCCGTCAAAGCCTCCTCCACCTCTGCTTTCTGCGCCGGTGGC
ACGTCAGCCATCCCTGCTATGCGCCCTGTGCCGTAGGTCACCTCCCCCAC
GTCCGTCACGCCCACGGAGACGTCCTGGCCGGGGCGGAGGAAGTGAAGGA
AGGGGGAGCGGTATTGGTTGTCCGCAAACAGAGTTTGATTGCCGCGGTAA
CCTTCGGGGGACATGGACGCGGCGCGACCTCGGGCTTTGTTCCCGTCTTT
TGTGAGGGGGTTGCCCTGGAAGAAAAGAGGCACGTCTTCTTGGTTGAGAC
GGACGAGGGTTTCTAA

Synonyms

Publications