jgi.p|Nanoce1779_2|574373, mRNA_854 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574373
Unique Name	mRNA_854
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1155
Alignment location	scaffold_2:588595..590078 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574459
Track	FilteredModels2
ProteinId	574373

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:588595..590078 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574373	gene_854	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574373	mRNA_854-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_854	CDS_854	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:588595..590078+
coding sequence from alignment at scaffold_2:588595..590078+

mRNA sequence

>mRNA_854 ID=mRNA_854|Name=jgi.p|Nanoce1779_2|574373|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
CTGAATGACTGACTACGATAGTCGTCAGTAGTCGTCGTCGATGTGATAAG
TGATAGTCGTGCATGATTTCCATCGAGGACGACTAGAAGTCGTTGTAGTC
GTGCATGAAGTAGGGCAGCCGCCCTACTCCAAGCCTAGTCGTTTGTTCGT
CTTTGCAGACACACACCCCCAGAATGCCCCACACCACGACAACAGGCTCG
ATTATGCGACGCGCCTTGGCACAAATTGCCCGCCCCGCTCTTGCAGCTGC
GGCGGGCGCTGCTAAGGCCGCACGCAGCAGCAACAGCATCAGGAGCACTC
TCGTCCTCCTGAGCCACCGCAGGGCATCCACGCTCCGTACCACCTCCATC
AGCAGCAGCACCAATGGGAGCATGACTTTGCTGGCTCTGCAGCATTTGCA
GTCATTCGCGCAGCGGCGGACCATGTTCATTCAGACAGAAAGCACACCTA
ATCCTGAGTCCCTCAAGTACGTCCCGGGCGAGGTGGTCCTCGACGAGAAG
TACGGCACTGGCATGTACTTTCGACAAGGCGACACGGAAGTGAATCGCTC
ACCACTGGCAAAAAAACTTTTGAAGATTGGAGGTGTTCAAGGCGTCTTTT
TGGGGCGAACATTTATCACTATTACTAAGTCGCCGGAGATCATTTGGCAG
AATCTGAACCCGGAAATCTTCGCCACCGTGATGGATCATTATGCTGAGGG
TGGGGTGATTGTGAGCGACCATGCCATCATCAGCGACACAACCATCCTGG
ACACGGATGATGATGTGGTGGCAATGATAAAGGAGTTAATGGAAAGCCGC
ATCCGCCCAGCAGTCCAAGAAGATGGGGGGGACATTTTTTATGAGGGATT
TGACATTGAGACGGGCGTGGTGAGCGTGCGGTTGGCAGGCTCCTGTTCAG
GCTGTCCCTCCTCGTCAGTGACGTTGAAGAACGGCGTGGAAAATATGTTG
ATGCACTATATTCCGGAGGTGAAAGGTATCCAGCAAGTGGAAGACGACGA
GCTCAAGGAGGTGAATGAGAAGGAGGTCGAGACGTTGGAGCAACGCCTAG
CCAAGGCGGGAATTCCGAGTGCGGAGTAGGAAGGGAAGGAGGGAGGGAAG
CAGGGAGGGAGGGAGGGAGGGAGGGAAGTAGTGTACACTTCTAGTCTCGT
CGTCC

protein sequence of jgi.p|Nanoce1779_2|574373

>mRNA_854-protein ID=mRNA_854-protein|Name=jgi.p|Nanoce1779_2|574373|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MPHTTTTGSIMRRALAQIARPALAAAAGAAKAARSSNSIRSTLVLLSHRR
ASTLRTTSISSSTNGSMTLLALQHLQSFAQRRTMFIQTESTPNPESLKYV
PGEVVLDEKYGTGMYFRQGDTEVNRSPLAKKLLKIGGVQGVFLGRTFITI
TKSPEIIWQNLNPEIFATVMDHYAEGGVIVSDHAIISDTTILDTDDDVVA
MIKELMESRIRPAVQEDGGDIFYEGFDIETGVVSVRLAGSCSGCPSSSVT
LKNGVENMLMHYIPEVKGIQQVEDDELKEVNEKEVETLEQRLAKAGIPSA
E*

mRNA from alignment at scaffold_2:588595..590078+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_854 ID=mRNA_854|Name=jgi.p|Nanoce1779_2|574373|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at scaffold_2:588595..590078+ (Nannochloropsis oceanica)
CTGAATGACTGACTACGATAGTCGTCAGTAGTCGTCGTCGATGTGATAAG
TGATAGTCGTGCATGATTTCCATCGAGGACGACTAGAAGTCGTTGTAGTC
GTGCATGAAGTAGGGCAGCCGCCCTACTCCAAGCCTAGTCGTTTGTTCGT
CTTTGCAGACACACACCCCCAGAATGCCCCACACCACGACAACAGGCTCG
ATTATGCGACGCGCCTTGGCACAAATTGCCCGCCCCGCTCTTGCAGCTGC
GGCGGGCGCTGCTAAGGCCGCACGCAGCAGCAACAGCATCAGGAGCACTC
TCGTCCTCCTGAGCCACCGCAGGGCATCCACGCTCCGTACCACCTCCATC
AGCAGCAGCACCAATGGGAGCATGACTTTGCTGGCTCTGCAGCATTTGCA
GTCATTCGCGCAGCGGCGGACCATGTTCATTCAGACAGAAAGCACACCTA
ATCCTGAGTCCCTCAAGTACGTCCCGGGCGAGGTGGTCCTCGACGAGAAG
TACGGCACTGGCATGTACTTTCGACAAGGCGACACGGAAGTGAATCGCTC
ACCACTGGCAAAAAAACTTTTGAAGATTGGAGGTGTTCAAGGCGTCTTTT
TGGGGCGAACATTTATCACTATTACTAAGTCGCCGGAGATCATTTGGCAG
GTGAGGCAAGAGGGGAAGGCGGGGGGGAAAGGAGGGCAAGGACGAAAAGA
GTGGAACATTTCTTCAGTCTTCCAGGCACGGTATCACTACTGCAATATCA
ACATATCTGATCACAACTACTCGCACCATTCCCTCTCCCTTCCTCTCTCT
TTAGAATCTGAACCCGGAAATCTTCGCCACCGTGATGGATCATTATGCTG
AGGGTGGGGTGATTGTGAGCGACCATGCCATCATCAGCGACACAACCATC
CTGGACACGGATGATGATGTGGTGGCAATGATAAAGGAGTTAATGGAAAG
CCGCATCCGCCCAGCAGTCCAAGAAGATGGGGGGGACATTTTTTATGAGG
GATTTGACATTGAGACGGGCGTGGTGAGCGTGCGGTTGGCAGGCTCCTGT
TCAGGCTGTCCCTCCTCGTCAGTGACGTTGAAGAACGGCGTGGAAAATAT
GTTGATGCACTATATTCCGGAGGTAGGGAGGGAGGGAGGGGGGGAGCTAG
TTACTGCCTCCCGTTTCCTACCTTTCTCACGCTTCCCTTGCTGGCAGCCT
TCTTGTCTGATACCGAGGAATTCATCTTTTCACGGCCTCTCTCTCTCTCT
CCCTCTCCCTCTCCCTCCTCCTCCCTCCCTCCCATGTCTGGACACAGGTG
AAAGGTATCCAGCAAGTGGAAGACGACGAGCTCAAGGAGGTGAATGAGAA
GGAGGTCGAGACGTTGGAGCAACGCCTAGCCAAGGCGGGAATTCCGAGTG
CGGAGTAGGAAGGGAAGGAGGGAGGGAAGCAGGGAGGGAGGGAGGGAGGG
AGGGAAGTAGTGTACACTTCTAGTCTCGTCGTCC

Coding sequence (CDS) from alignment at scaffold_2:588595..590078+

>mRNA_854 ID=mRNA_854|Name=jgi.p|Nanoce1779_2|574373|organism=Nannochloropsis oceanica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_2:588595..590078+ (Nannochloropsis oceanica)
ATGCCCCACACCACGACAACAGGCTCGATTATGCGACGCGCCTTGGCACA
AATTGCCCGCCCCGCTCTTGCAGCTGCGGCGGGCGCTGCTAAGGCCGCAC
GCAGCAGCAACAGCATCAGGAGCACTCTCGTCCTCCTGAGCCACCGCAGG
GCATCCACGCTCCGTACCACCTCCATCAGCAGCAGCACCAATGGGAGCAT
GACTTTGCTGGCTCTGCAGCATTTGCAGTCATTCGCGCAGCGGCGGACCA
TGTTCATTCAGACAGAAAGCACACCTAATCCTGAGTCCCTCAAGTACGTC
CCGGGCGAGGTGGTCCTCGACGAGAAGTACGGCACTGGCATGTACTTTCG
ACAAGGCGACACGGAAGTGAATCGCTCACCACTGGCAAAAAAACTTTTGA
AGATTGGAGGTGTTCAAGGCGTCTTTTTGGGGCGAACATTTATCACTATT
ACTAAGTCGCCGGAGATCATTTGGCAGAATCTGAACCCGGAAATCTTCGC
CACCGTGATGGATCATTATGCTGAGGGTGGGGTGATTGTGAGCGACCATG
CCATCATCAGCGACACAACCATCCTGGACACGGATGATGATGTGGTGGCA
ATGATAAAGGAGTTAATGGAAAGCCGCATCCGCCCAGCAGTCCAAGAAGA
TGGGGGGGACATTTTTTATGAGGGATTTGACATTGAGACGGGCGTGGTGA
GCGTGCGGTTGGCAGGCTCCTGTTCAGGCTGTCCCTCCTCGTCAGTGACG
TTGAAGAACGGCGTGGAAAATATGTTGATGCACTATATTCCGGAGGTGAA
AGGTATCCAGCAAGTGGAAGACGACGAGCTCAAGGAGGTGAATGAGAAGG
AGGTCGAGACGTTGGAGCAACGCCTAGCCAAGGCGGGAATTCCGAGTGCG
GAGTAGATGCCCCACACCACGACAACAGGCTCGATTATGCGACGCGCCTT
GGCACAAATTGCCCGCCCCGCTCTTGCAGCTGCGGCGGGCGCTGCTAAGG
CCGCACGCAGCAGCAACAGCATCAGGAGCACTCTCGTCCTCCTGAGCCAC
CGCAGGGCATCCACGCTCCGTACCACCTCCATCAGCAGCAGCACCAATGG
GAGCATGACTTTGCTGGCTCTGCAGCATTTGCAGTCATTCGCGCAGCGGC
GGACCATGTTCATTCAGACAGAAAGCACACCTAATCCTGAGTCCCTCAAG
TACGTCCCGGGCGAGGTGGTCCTCGACGAGAAGTACGGCACTGGCATGTA
CTTTCGACAAGGCGACACGGAAGTGAATCGCTCACCACTGGCAAAAAAAC
TTTTGAAGATTGGAGGTGTTCAAGGCGTCTTTTTGGGGCGAACATTTATC
ACTATTACTAAGTCGCCGGAGATCATTTGGCAGAATCTGAACCCGGAAAT
CTTCGCCACCGTGATGGATCATTATGCTGAGGGTGGGGTGATTGTGAGCG
ACCATGCCATCATCAGCGACACAACCATCCTGGACACGGATGATGATGTG
GTGGCAATGATAAAGGAGTTAATGGAAAGCCGCATCCGCCCAGCAGTCCA
AGAAGATGGGGGGGACATTTTTTATGAGGGATTTGACATTGAGACGGGCG
TGGTGAGCGTGCGGTTGGCAGGCTCCTGTTCAGGCTGTCCCTCCTCGTCA
GTGACGTTGAAGAACGGCGTGGAAAATATGTTGATGCACTATATTCCGGA
GGTGAAAGGTATCCAGCAAGTGGAAGACGACGAGCTCAAGGAGGTGAATG
AGAAGGAGGTCGAGACGTTGGAGCAACGCCTAGCCAAGGCGGGAATTCCG
AGTGCGGAGTAGATGCCCCACACCACGACAACAGGCTCGATTATGCGACG
CGCCTTGGCACAAATTGCCCGCCCCGCTCTTGCAGCTGCGGCGGGCGCTG
CTAAGGCCGCACGCAGCAGCAACAGCATCAGGAGCACTCTCGTCCTCCTG
AGCCACCGCAGGGCATCCACGCTCCGTACCACCTCCATCAGCAGCAGCAC
CAATGGGAGCATGACTTTGCTGGCTCTGCAGCATTTGCAGTCATTCGCGC
AGCGGCGGACCATGTTCATTCAGACAGAAAGCACACCTAATCCTGAGTCC
CTCAAGTACGTCCCGGGCGAGGTGGTCCTCGACGAGAAGTACGGCACTGG
CATGTACTTTCGACAAGGCGACACGGAAGTGAATCGCTCACCACTGGCAA
AAAAACTTTTGAAGATTGGAGGTGTTCAAGGCGTCTTTTTGGGGCGAACA
TTTATCACTATTACTAAGTCGCCGGAGATCATTTGGCAGAATCTGAACCC
GGAAATCTTCGCCACCGTGATGGATCATTATGCTGAGGGTGGGGTGATTG
TGAGCGACCATGCCATCATCAGCGACACAACCATCCTGGACACGGATGAT
GATGTGGTGGCAATGATAAAGGAGTTAATGGAAAGCCGCATCCGCCCAGC
AGTCCAAGAAGATGGGGGGGACATTTTTTATGAGGGATTTGACATTGAGA
CGGGCGTGGTGAGCGTGCGGTTGGCAGGCTCCTGTTCAGGCTGTCCCTCC
TCGTCAGTGACGTTGAAGAACGGCGTGGAAAATATGTTGATGCACTATAT
TCCGGAGGTGAAAGGTATCCAGCAAGTGGAAGACGACGAGCTCAAGGAGG
TGAATGAGAAGGAGGTCGAGACGTTGGAGCAACGCCTAGCCAAGGCGGGA
ATTCCGAGTGCGGAGTAG

Synonyms

Publications