jgi.p|Nanoce1779_2|603019, mRNA_8538 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603019
Unique NamemRNA_8538
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length452
Alignment locationscaffold_26:152544..152995 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603105
TrackFilteredModels2
ProteinId603019
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:152544..152995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603019gene_8538Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603019mRNA_8538-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8538CDS_8538Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8538 ID=mRNA_8538|Name=jgi.p|Nanoce1779_2|603019|organism=Nannochloropsis oceanica|type=mRNA|length=452bp
ACAGGTCGACGTGCTAGCGCGTGTCCCATCTTTAGCCGCATCGACTGGTC
TCCTACGCTCCCAGCACTATCAATCAAACCGTCATGGCCAGCAGTACCAG
TAGCAAGCCCATGATCGGGGGGCCCAAAGTGACGTTTAAGATCACGCTAA
CTTCGGATCCGAAGCTCCCCTTTAAGATGGTGTCCGTACCGGAAGATGCG
CCGTTCACTGCGGTCTTGAAATACGTAGCAGAGGAGTTCCGTGTACCTTC
TCAGACGAGTGCGGTTGTTACCGATGACGGCGTGGGAATCAATCCTGCCC
AGTCTGCGGGCAACGTGTTGATGAAGCATGGTACGGAGCTGCGTCTCATA
CCCCGAGACCGCGTCGGCGGAGGGAGCCACCGGAGACGGGGAGGAGCAGG
GTTGTGAGATGTGAGAAGGGAGGACAAAAGCAAATCAAAAGTAATCTGTT
GG
back to top

protein sequence of jgi.p|Nanoce1779_2|603019

>mRNA_8538-protein ID=mRNA_8538-protein|Name=jgi.p|Nanoce1779_2|603019|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MASSTSSKPMIGGPKVTFKITLTSDPKLPFKMVSVPEDAPFTAVLKYVAE
EFRVPSQTSAVVTDDGVGINPAQSAGNVLMKHGTELRLIPRDRVGGGSHR
RRGGAGL*
back to top

mRNA from alignment at scaffold_26:152544..152995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8538 ID=mRNA_8538|Name=jgi.p|Nanoce1779_2|603019|organism=Nannochloropsis oceanica|type=mRNA|length=452bp|location=Sequence derived from alignment at scaffold_26:152544..152995+ (Nannochloropsis oceanica)
ACAGGTCGACGTGCTAGCGCGTGTCCCATCTTTAGCCGCATCGACTGGTC
TCCTACGCTCCCAGCACTATCAATCAAACCGTCATGGCCAGCAGTACCAG
TAGCAAGCCCATGATCGGGGGGCCCAAAGTGACGTTTAAGATCACGCTAA
CTTCGGATCCGAAGCTCCCCTTTAAGATGGTGTCCGTACCGGAAGATGCG
CCGTTCACTGCGGTCTTGAAATACGTAGCAGAGGAGTTCCGTGTACCTTC
TCAGACGAGTGCGGTTGTTACCGATGACGGCGTGGGAATCAATCCTGCCC
AGTCTGCGGGCAACGTGTTGATGAAGCATGGTACGGAGCTGCGTCTCATA
CCCCGAGACCGCGTCGGCGGAGGGAGCCACCGGAGACGGGGAGGAGCAGG
GTTGTGAGATGTGAGAAGGGAGGACAAAAGCAAATCAAAAGTAATCTGTT
GG
back to top

Coding sequence (CDS) from alignment at scaffold_26:152544..152995+

>mRNA_8538 ID=mRNA_8538|Name=jgi.p|Nanoce1779_2|603019|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_26:152544..152995+ (Nannochloropsis oceanica)
ATGGCCAGCAGTACCAGTAGCAAGCCCATGATCGGGGGGCCCAAAGTGAC
GTTTAAGATCACGCTAACTTCGGATCCGAAGCTCCCCTTTAAGATGGTGT
CCGTACCGGAAGATGCGCCGTTCACTGCGGTCTTGAAATACGTAGCAGAG
GAGTTCCGTGTACCTTCTCAGACGAGTGCGGTTGTTACCGATGACGGCGT
GGGAATCAATCCTGCCCAGTCTGCGGGCAACGTGTTGATGAAGCATGGTA
CGGAGCTGCGTCTCATACCCCGAGACCGCGTCGGCGGAGGGAGCCACCGG
AGACGGGGAGGAGCAGGGTTGTGA
back to top
Synonyms
Publications