jgi.p|Nanoce1779_2|603007, mRNA_8535 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603007
Unique NamemRNA_8535
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1067
Alignment locationscaffold_26:143904..144970 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603093
TrackFilteredModels2
ProteinId603007
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:143904..144970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603007gene_8535Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603007mRNA_8535-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8535CDS_8535Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8535 ID=mRNA_8535|Name=jgi.p|Nanoce1779_2|603007|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp
CAGCACAGCACGACGAATCCTTCTTCGCCCACCCACGAGCTGCCCAGAGA
AGCAACGCCAAGAATGTCTGCCAAGCTGGTCGTGGCAGCCGACACGGAAA
CCCTCAAGGCCGTCATTGCAGAGCATGTGGCGGTGTCGGCCAAGGCAGCG
ATTGCTGACCGGGGCTGCTATACACTCGCGCTTTCGGGGGGCTCGATGCC
AGGCTTGTTGGGCGGGCTGACGAGCGTCTCCGGCGTGGATTGGACACAGG
TATACGTCCTCTTCTCCGACGAGCGATGCGTCTCACTAGATGACGCGGAC
AGCAACTACAAAGCCTGTAGTGATGCCCTGCTCAGCAAGCTATCGATTCC
CGCGAGCAACGTCTTGACGATCGATCCCACCCTCGGCAGCGCCGACGCCA
TGGCGCAGGCCTACGAGACAAAGCTCAAGGCTTTGTTGCCCTCCCCTGGC
GGCATTCCACAGCTCGACACGGTAATTCTGGGTTTTGGTCCTGATGGGCA
TACCGCATCCCTTTTCCCGGACCACCCCTTGCTCGGCGAAACTGGCAAAT
TTGTGGCGGGCATCGAGGACTCGCCCAAGCCACCGCCTGAACGCATCACG
CTGACGTTTCCAATCCTACATGCCGCCCGGGAGGTATTGTTTATTGCTGC
CGGGGTCGCTAAGGCCCAGCTTTTCCAACAGGCCTTTTCGGCCCCGGCCC
TAATCGCGGGGGAAAAGCAACAACCCTCGGCCATTTTGGATGCAGGAGTG
AGGAGCCACAGCATCGTCTCCTTGCGCAGCAACTCACCCTATCCCGCATT
TCAAGTCCGACCGTCCACAGAAAATCTGTGGTATTACACAGACACAGCCG
GAGCATCGTTGCTGCCAGCTAATCTAAAGACTGTGGTGACTATAAAAGCC
GCAACGGGTTTTTTGTGAGAACGGGTGGGGGCATCACTAATTTGCGAGTA
GAATAGTTGAGAAAAATCGATTATTACAAGAAGAGAAATGGGGCCACACA
CAAAATATAGACTAGCACAGATGTATCTGAATACAATTTAAAAACAAATG
GTAAATGTAAAAGCAAC
back to top

protein sequence of jgi.p|Nanoce1779_2|603007

>mRNA_8535-protein ID=mRNA_8535-protein|Name=jgi.p|Nanoce1779_2|603007|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MSAKLVVAADTETLKAVIAEHVAVSAKAAIADRGCYTLALSGGSMPGLLG
GLTSVSGVDWTQVYVLFSDERCVSLDDADSNYKACSDALLSKLSIPASNV
LTIDPTLGSADAMAQAYETKLKALLPSPGGIPQLDTVILGFGPDGHTASL
FPDHPLLGETGKFVAGIEDSPKPPPERITLTFPILHAAREVLFIAAGVAK
AQLFQQAFSAPALIAGEKQQPSAILDAGVRSHSIVSLRSNSPYPAFQVRP
STENLWYYTDTAGASLLPANLKTVVTIKAATGFL*
back to top

mRNA from alignment at scaffold_26:143904..144970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8535 ID=mRNA_8535|Name=jgi.p|Nanoce1779_2|603007|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp|location=Sequence derived from alignment at scaffold_26:143904..144970+ (Nannochloropsis oceanica)
CAGCACAGCACGACGAATCCTTCTTCGCCCACCCACGAGCTGCCCAGAGA
AGCAACGCCAAGAATGTCTGCCAAGCTGGTCGTGGCAGCCGACACGGAAA
CCCTCAAGGCCGTCATTGCAGAGCATGTGGCGGTGTCGGCCAAGGCAGCG
ATTGCTGACCGGGGCTGCTATACACTCGCGCTTTCGGGGGGCTCGATGCC
AGGCTTGTTGGGCGGGCTGACGAGCGTCTCCGGCGTGGATTGGACACAGG
TATACGTCCTCTTCTCCGACGAGCGATGCGTCTCACTAGATGACGCGGAC
AGCAACTACAAAGCCTGTAGTGATGCCCTGCTCAGCAAGCTATCGATTCC
CGCGAGCAACGTCTTGACGATCGATCCCACCCTCGGCAGCGCCGACGCCA
TGGCGCAGGCCTACGAGACAAAGCTCAAGGCTTTGTTGCCCTCCCCTGGC
GGCATTCCACAGCTCGACACGGTAATTCTGGGTTTTGGTCCTGATGGGCA
TACCGCATCCCTTTTCCCGGACCACCCCTTGCTCGGCGAAACTGGCAAAT
TTGTGGCGGGCATCGAGGACTCGCCCAAGCCACCGCCTGAACGCATCACG
CTGACGTTTCCAATCCTACATGCCGCCCGGGAGGTATTGTTTATTGCTGC
CGGGGTCGCTAAGGCCCAGCTTTTCCAACAGGCCTTTTCGGCCCCGGCCC
TAATCGCGGGGGAAAAGCAACAACCCTCGGCCATTTTGGATGCAGGAGTG
AGGAGCCACAGCATCGTCTCCTTGCGCAGCAACTCACCCTATCCCGCATT
TCAAGTCCGACCGTCCACAGAAAATCTGTGGTATTACACAGACACAGCCG
GAGCATCGTTGCTGCCAGCTAATCTAAAGACTGTGGTGACTATAAAAGCC
GCAACGGGTTTTTTGTGAGAACGGGTGGGGGCATCACTAATTTGCGAGTA
GAATAGTTGAGAAAAATCGATTATTACAAGAAGAGAAATGGGGCCACACA
CAAAATATAGACTAGCACAGATGTATCTGAATACAATTTAAAAACAAATG
GTAAATGTAAAAGCAAC
back to top

Coding sequence (CDS) from alignment at scaffold_26:143904..144970+

>mRNA_8535 ID=mRNA_8535|Name=jgi.p|Nanoce1779_2|603007|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_26:143904..144970+ (Nannochloropsis oceanica)
ATGTCTGCCAAGCTGGTCGTGGCAGCCGACACGGAAACCCTCAAGGCCGT
CATTGCAGAGCATGTGGCGGTGTCGGCCAAGGCAGCGATTGCTGACCGGG
GCTGCTATACACTCGCGCTTTCGGGGGGCTCGATGCCAGGCTTGTTGGGC
GGGCTGACGAGCGTCTCCGGCGTGGATTGGACACAGGTATACGTCCTCTT
CTCCGACGAGCGATGCGTCTCACTAGATGACGCGGACAGCAACTACAAAG
CCTGTAGTGATGCCCTGCTCAGCAAGCTATCGATTCCCGCGAGCAACGTC
TTGACGATCGATCCCACCCTCGGCAGCGCCGACGCCATGGCGCAGGCCTA
CGAGACAAAGCTCAAGGCTTTGTTGCCCTCCCCTGGCGGCATTCCACAGC
TCGACACGGTAATTCTGGGTTTTGGTCCTGATGGGCATACCGCATCCCTT
TTCCCGGACCACCCCTTGCTCGGCGAAACTGGCAAATTTGTGGCGGGCAT
CGAGGACTCGCCCAAGCCACCGCCTGAACGCATCACGCTGACGTTTCCAA
TCCTACATGCCGCCCGGGAGGTATTGTTTATTGCTGCCGGGGTCGCTAAG
GCCCAGCTTTTCCAACAGGCCTTTTCGGCCCCGGCCCTAATCGCGGGGGA
AAAGCAACAACCCTCGGCCATTTTGGATGCAGGAGTGAGGAGCCACAGCA
TCGTCTCCTTGCGCAGCAACTCACCCTATCCCGCATTTCAAGTCCGACCG
TCCACAGAAAATCTGTGGTATTACACAGACACAGCCGGAGCATCGTTGCT
GCCAGCTAATCTAAAGACTGTGGTGACTATAAAAGCCGCAACGGGTTTTT
TGTGA
back to top
Synonyms
Publications