jgi.p|Nanoce1779_2|602995, mRNA_8533 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602995
Unique NamemRNA_8533
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1169
Alignment locationscaffold_26:136309..137566 -

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Properties
Property NameValue
TranscriptId603081
TrackFilteredModels2
ProteinId602995
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:136309..137566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602995gene_8533Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602995mRNA_8533-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8533CDS_8533Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8533 ID=mRNA_8533|Name=jgi.p|Nanoce1779_2|602995|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp
ACTCACGTGAGTCAAACGTCTGCTTCAAGTTGATGTGGCATGGGGCTACC
TGTACAAAAAAGAAACAGGTACCGGCAACAGTACCAGGAATCTGCTTCAC
GACGACTTCTAGGTTTATGTAACATGATAGCATGGCTGTGGATGGGCGTG
AGTGTAGTAGGGCATCTTGACTTGTTGATTCCAAAAGTTTGGAAAGTTTT
TCCTCGACGAAGAACCACTCAAGGTTTAACCAACGGACCCGGTCCGTTTT
CTCATACATAATATTATAGGAATGCGGACCATGTCAGCAGCCACCGAAGT
GGCGGAAAAGAGACCGCGGGTTCTGCTCGAGGTGTGCGTTGACAGTCTTC
AAGGCGTGGCCACCGCGCTAAGGCACGGGGCGGACCGCATCGAACTGTGC
AGTGCATTGGAAGTGGGTGGCCTAACGCCATCGCTGGGCCTGATGGAAAC
GGCGGCCTCCTTGGTTGCTTCGCAACATCTCGAGAGAGGGCCTCCCGAAG
TAGTAGCTATGATACGGCCTCGCTCTGGAGACTTTTCTTATTCAGCCATG
GACTTGGCAGTAATGAAGCGCGACATTGAGTGTGCTCGTCGCGTTGGCCT
CGCGGGTGTCGTATTTGGGTCCACCACTGCGTCAGACACGGACTTGGACC
TGACCGCCATCCGGTCGCTTGTTGCGGTCGCCCAGACACCCCACTTATCC
CATTCCACCCCCTTTAGCATCACCCTCCACCGCGCCATTGACCTATCGCC
AGACCCAGTAGCCAGCTTGCGCTCCATGTTGAAAGAGCTACCTCCGGGAT
CCATAGACAGAGTCCTCACTTCGGGCGGTGCTCGGTCTGCCTGGGACGGA
CGAGACACCATCGCCCGCATGGTCAAGGCAGCCGTGGGAAGCGGCGTCGT
GGTCATGGCGGGTGCCGGGGTGAGCGTGGCCAATGTATCCGAGCTGGTTA
AGGCCACTGGGGTGACGGATGTGCATGCGTCGTGCAGCAGCATTGTTGAC
AGCATCAGTAGTATGGAAGAACGAGAAGGAGCGACGAATGAAGTGGTGGG
AAAGATGGTGGCCTTCGGCTTCATCGGAAGAGAGGGGGTCAAAGATACAG
ACGGAGCCAAGATCGAGAATCTGGCCAAAATTGTACATGCCTTGTAGAGA
AAATACTGAGTGAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|602995

>mRNA_8533-protein ID=mRNA_8533-protein|Name=jgi.p|Nanoce1779_2|602995|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MRTMSAATEVAEKRPRVLLEVCVDSLQGVATALRHGADRIELCSALEVGG
LTPSLGLMETAASLVASQHLERGPPEVVAMIRPRSGDFSYSAMDLAVMKR
DIECARRVGLAGVVFGSTTASDTDLDLTAIRSLVAVAQTPHLSHSTPFSI
TLHRAIDLSPDPVASLRSMLKELPPGSIDRVLTSGGARSAWDGRDTIARM
VKAAVGSGVVVMAGAGVSVANVSELVKATGVTDVHASCSSIVDSISSMEE
REGATNEVVGKMVAFGFIGREGVKDTDGAKIENLAKIVHAL*
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mRNA from alignment at scaffold_26:136309..137566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8533 ID=mRNA_8533|Name=jgi.p|Nanoce1779_2|602995|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp|location=Sequence derived from alignment at scaffold_26:136309..137566- (Nannochloropsis oceanica)
ACTCACGTGAGTCAAACGTCTGCTTCAAGTTGATGTGGCATGGGGCTACC
TGTACAAAAAAGAAACAGGTACCGGCAACAGTACCAGGAATCTGCTTCAC
GACGACTTCTAGGTTTATGTAACATGATAGCATGGCTGTGGATGGGCGTG
AGTGTAGTAGGGCATCTTGACTTGTTGATTCCAAAAGTTTGGAAAGTTTT
TCCTCGACGAAGAACCACTCAAGGTTTAACCAACGGACCCGGTCCGTTTT
CTCATACATAATATTATAGGAATGCGGACCATGTCAGCAGCCACCGAAGT
GGCGGAAAAGAGACCGCGGGTTCTGCTCGAGGTACGCACGTACAGGCATT
CCCCACCTCTCCAAAGCCAAGCAAGCAAGAGCAAGTACTCACCGTCGTGC
TCGTCGCCCCGCATGCACAGGTGTGCGTTGACAGTCTTCAAGGCGTGGCC
ACCGCGCTAAGGCACGGGGCGGACCGCATCGAACTGTGCAGTGCATTGGA
AGTGGGTGGCCTAACGCCATCGCTGGGCCTGATGGAAACGGCGGCCTCCT
TGGTTGCTTCGCAACATCTCGAGAGAGGGCCTCCCGAAGTAGTAGCTATG
ATACGGCCTCGCTCTGGAGACTTTTCTTATTCAGCCATGGACTTGGCAGT
AATGAAGCGCGACATTGAGTGTGCTCGTCGCGTTGGCCTCGCGGGTGTCG
TATTTGGGTCCACCACTGCGTCAGACACGGACTTGGACCTGACCGCCATC
CGGTCGCTTGTTGCGGTCGCCCAGACACCCCACTTATCCCATTCCACCCC
CTTTAGCATCACCCTCCACCGCGCCATTGACCTATCGCCAGACCCAGTAG
CCAGCTTGCGCTCCATGTTGAAAGAGCTACCTCCGGGATCCATAGACAGA
GTCCTCACTTCGGGCGGTGCTCGGTCTGCCTGGGACGGACGAGACACCAT
CGCCCGCATGGTCAAGGCAGCCGTGGGAAGCGGCGTCGTGGTCATGGCGG
GTGCCGGGGTGAGCGTGGCCAATGTATCCGAGCTGGTTAAGGCCACTGGG
GTGACGGATGTGCATGCGTCGTGCAGCAGCATTGTTGACAGCATCAGTAG
TATGGAAGAACGAGAAGGAGCGACGAATGAAGTGGTGGGAAAGATGGTGG
CCTTCGGCTTCATCGGAAGAGAGGGGGTCAAAGATACAGACGGAGCCAAG
ATCGAGAATCTGGCCAAAATTGTACATGCCTTGTAGAGAAAATACTGAGT
GAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_26:136309..137566-

>mRNA_8533 ID=mRNA_8533|Name=jgi.p|Nanoce1779_2|602995|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_26:136309..137566- (Nannochloropsis oceanica)
GTGTGCGTTGACAGTCTTCAAGGCGTGGCCACCGCGCTAAGGCACGGGGC
GGACCGCATCGAACTGTGCAGTGCATTGGAAGTGGGTGGCCTAACGCCAT
CGCTGGGCCTGATGGAAACGGCGGCCTCCTTGGTTGCTTCGCAACATCTC
GAGAGAGGGCCTCCCGAAGTAGTAGCTATGATACGGCCTCGCTCTGGAGA
CTTTTCTTATTCAGCCATGGACTTGGCAGTAATGAAGCGCGACATTGAGT
GTGCTCGTCGCGTTGGCCTCGCGGGTGTCGTATTTGGGTCCACCACTGCG
TCAGACACGGACTTGGACCTGACCGCCATCCGGTCGCTTGTTGCGGTCGC
CCAGACACCCCACTTATCCCATTCCACCCCCTTTAGCATCACCCTCCACC
GCGCCATTGACCTATCGCCAGACCCAGTAGCCAGCTTGCGCTCCATGTTG
AAAGAGCTACCTCCGGGATCCATAGACAGAGTCCTCACTTCGGGCGGTGC
TCGGTCTGCCTGGGACGGACGAGACACCATCGCCCGCATGGTCAAGGCAG
CCGTGGGAAGCGGCGTCGTGGTCATGGCGGGTGCCGGGGTGAGCGTGGCC
AATGTATCCGAGCTGGTTAAGGCCACTGGGGTGACGGATGTGCATGCGTC
GTGCAGCAGCATTGTTGACAGCATCAGTAGTATGGAAGAACGAGAAGGAG
CGACGAATGAAGTGGTGGGAAAGATGGTGGCCTTCGGCTTCATCGGAAGA
GAGGGGGTCAAAGATACAGACGGAGCCAAGATCGAGAATCTGGCCAAAAT
TGTACATGCCTTGTAGATGCGGACCATGTCAGCAGCCACCGAAGTGGCGG
AAAAGAGACCGCGGGTTCTGCTCGAGGTGTGCGTTGACAGTCTTCAAGGC
GTGGCCACCGCGCTAAGGCACGGGGCGGACCGCATCGAACTGTGCAGTGC
ATTGGAAGTGGGTGGCCTAACGCCATCGCTGGGCCTGATGGAAACGGCGG
CCTCCTTGGTTGCTTCGCAACATCTCGAGAGAGGGCCTCCCGAAGTAGTA
GCTATGATACGGCCTCGCTCTGGAGACTTTTCTTATTCAGCCATGGACTT
GGCAGTAATGAAGCGCGACATTGAGTGTGCTCGTCGCGTTGGCCTCGCGG
GTGTCGTATTTGGGTCCACCACTGCGTCAGACACGGACTTGGACCTGACC
GCCATCCGGTCGCTTGTTGCGGTCGCCCAGACACCCCACTTATCCCATTC
CACCCCCTTTAGCATCACCCTCCACCGCGCCATTGACCTATCGCCAGACC
CAGTAGCCAGCTTGCGCTCCATGTTGAAAGAGCTACCTCCGGGATCCATA
GACAGAGTCCTCACTTCGGGCGGTGCTCGGTCTGCCTGGGACGGACGAGA
CACCATCGCCCGCATGGTCAAGGCAGCCGTGGGAAGCGGCGTCGTGGTCA
TGGCGGGTGCCGGGGTGAGCGTGGCCAATGTATCCGAGCTGGTTAAGGCC
ACTGGGGTGACGGATGTGCATGCGTCGTGCAGCAGCATTGTTGACAGCAT
CAGTAGTATGGAAGAACGAGAAGGAGCGACGAATGAAGTGGTGGGAAAGA
TGGTGGCCTTCGGCTTCATCGGAAGAGAGGGGGTCAAAGATACAGACGGA
GCCAAGATCGAGAATCTGGCCAAAATTGTACATGCCTTGTAGATGCGGAC
CATGTCAGCAGCCACCGAAGTGGCGGAAAAGAGACCGCGGGTTCTGCTCG
AG
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Synonyms
Publications