jgi.p|Nanoce1779_2|602992, mRNA_8532 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602992
Unique NamemRNA_8532
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length760
Alignment locationscaffold_26:135261..136371 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603078
TrackFilteredModels2
ProteinId602992
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:135261..136371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602992gene_8532Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602992mRNA_8532-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8532CDS_8532Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8532 ID=mRNA_8532|Name=jgi.p|Nanoce1779_2|602992|organism=Nannochloropsis oceanica|type=mRNA|length=760bp
CAGGCACAGGTAGTTATTGGATTGGATCCGCTCTCTCCGGCCTGCAATCA
CACACCAGACATCCAGCCATGGCCTCGTCCTTTCACCGATGGGGGTGCCG
GTGCCTCCTCGCCTTGCAGCAACGCGCCGCCACGAGCACCGTCTCCACTT
CCTCCTCCATTTCTTTCTCATCCTCTTCGTCGTCGCGACCCGACGGTGTC
GCTGTCATGGCCTTGAGAAGAAGAATACCAGCCTCAACATTCTCCACCAA
GGCTCCCACGGCCAAGAAGGGCAAAAAAGGGGGAGACGAAGGCGGAGGCG
GTGGCGGTGCTGGCGCAGAGGCTCCCGTGGGGGATGCCAGCAAGGTTGCA
CCCATCAATATTCACAAGGAAGGCAAGGATCCACCGCTACTGTCCGACGA
CCAATACCCTGACTGGCTTTTCGACATTCGGCCCCTGACCCTGCCCGAGT
ACCGCAAGATGGACATCTCCAAGTTGCCGCTCAAGGAGCAACGCCGGTAC
TGGAAACTACTCAACCGGCAGGTTATCAAGGAGAAGAATGCAGCGGGCCA
GAGGCTGTAGTAGGGGTGACAGTAGACAGAGGGCAGGCTCAGTGGGCGTG
CGTCGGATGCGGAAATTGGGTCGGTTTTGTTGTGCTGAGAGGGCTTGTCA
TGAATCACGAAAAAATCAAAAAGCATGAAAATAATTTGCAAAATTCATTT
TTTTCACTCAGTATTTTCTCTACAAGGCATGTACAATTTTGGCCAGATTC
TCGATCTTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|602992

>mRNA_8532-protein ID=mRNA_8532-protein|Name=jgi.p|Nanoce1779_2|602992|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MASSFHRWGCRCLLALQQRAATSTVSTSSSISFSSSSSSRPDGVAVMALR
RRIPASTFSTKAPTAKKGKKGGDEGGGGGGAGAEAPVGDASKVAPINIHK
EGKDPPLLSDDQYPDWLFDIRPLTLPEYRKMDISKLPLKEQRRYWKLLNR
QVIKEKNAAGQRL*
back to top

mRNA from alignment at scaffold_26:135261..136371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8532 ID=mRNA_8532|Name=jgi.p|Nanoce1779_2|602992|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp|location=Sequence derived from alignment at scaffold_26:135261..136371+ (Nannochloropsis oceanica)
CAGGCACAGGTAGTTATTGGATTGGATCCGCTCTCTCCGGCCTGCAATCA
CACACCAGACATCCAGCCATGGCCTCGTCCTTTCACCGATGGGGGTGCCG
GTGCCTCCTCGCCTTGCAGCAACGCGCCGCCACGAGCACCGTCTCCACTT
CCTCCTCCATTTCTTTCTCATCCTCTTCGTCGTCGCGACCCGACGGTGTC
GCTGTCATGGCCTTGAGAAGAAGAATACCAGCCTCAACATTCTCCACCAA
GGCTCCCACGGCCAAGAAGGGCAAAAAAGGGGGAGACGAAGGCGGAGGCG
GTGGCGGTGCTGGCGCAGAGGCTCCCGTGGGGGATGCCAGCAAGGTTGCA
CCCATCAATATTCACAAGGAAGGCAAGGATCCACCGCTACTGTCCGACGA
CCAATACCCTGACTGGCTTTTCGACATTCGGGTGAGATAAAGTTAATTAG
GCGGTGGAGGCTTGTTGTGTTGTGATTTGTGCCTGTCCTGTTTATCTCCT
TGGTCATGTATACTGATGTGTGAGTGTTTTGGGGCGGCTCAACTACAACT
GAACAAACTCAGTACCATCAACTCGCAAAATGTGGTCGCGCTGGTTCCCT
TCACTAAATGGCAGACAGCTCCACGAGATGAAGACTCCGGTTTACAATTT
TATCTTATCTCTCTCCTTATCTGTATCGAGAGAATTTATTTACATTCATA
TATTTCTTCACCCAGCAATCTTAAATCTGGCATGTTCTCACCTGTTTCTA
TTCCTCATTCCCTTCCCCCCCCACACACATAGCCCCTGACCCTGCCCGAG
TACCGCAAGATGGACATCTCCAAGTTGCCGCTCAAGGAGCAACGCCGGTA
CTGGAAACTACTCAACCGGCAGGTTATCAAGGAGAAGAATGCAGCGGGCC
AGAGGCTGTAGTAGGGGTGACAGTAGACAGAGGGCAGGCTCAGTGGGCGT
GCGTCGGATGCGGAAATTGGGTCGGTTTTGTTGTGCTGAGAGGGCTTGTC
ATGAATCACGAAAAAATCAAAAAGCATGAAAATAATTTGCAAAATTCATT
TTTTTCACTCAGTATTTTCTCTACAAGGCATGTACAATTTTGGCCAGATT
CTCGATCTTGG
back to top

Coding sequence (CDS) from alignment at scaffold_26:135261..136371+

>mRNA_8532 ID=mRNA_8532|Name=jgi.p|Nanoce1779_2|602992|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_26:135261..136371+ (Nannochloropsis oceanica)
ATGGCCTCGTCCTTTCACCGATGGGGGTGCCGGTGCCTCCTCGCCTTGCA
GCAACGCGCCGCCACGAGCACCGTCTCCACTTCCTCCTCCATTTCTTTCT
CATCCTCTTCGTCGTCGCGACCCGACGGTGTCGCTGTCATGGCCTTGAGA
AGAAGAATACCAGCCTCAACATTCTCCACCAAGGCTCCCACGGCCAAGAA
GGGCAAAAAAGGGGGAGACGAAGGCGGAGGCGGTGGCGGTGCTGGCGCAG
AGGCTCCCGTGGGGGATGCCAGCAAGGTTGCACCCATCAATATTCACAAG
GAAGGCAAGGATCCACCGCTACTGTCCGACGACCAATACCCTGACTGGCT
TTTCGACATTCGGCCCCTGACCCTGCCCGAGTACCGCAAGATGGACATCT
CCAAGTTGCCGCTCAAGGAGCAACGCCGGTACTGGAAACTACTCAACCGG
CAGGTTATCAAGGAGAAGAATGCAGCGGGCCAGAGGCTGTAGATGGCCTC
GTCCTTTCACCGATGGGGGTGCCGGTGCCTCCTCGCCTTGCAGCAACGCG
CCGCCACGAGCACCGTCTCCACTTCCTCCTCCATTTCTTTCTCATCCTCT
TCGTCGTCGCGACCCGACGGTGTCGCTGTCATGGCCTTGAGAAGAAGAAT
ACCAGCCTCAACATTCTCCACCAAGGCTCCCACGGCCAAGAAGGGCAAAA
AAGGGGGAGACGAAGGCGGAGGCGGTGGCGGTGCTGGCGCAGAGGCTCCC
GTGGGGGATGCCAGCAAGGTTGCACCCATCAATATTCACAAGGAAGGCAA
GGATCCACCGCTACTGTCCGACGACCAATACCCTGACTGGCTTTTCGACA
TTCGGCCCCTGACCCTGCCCGAGTACCGCAAGATGGACATCTCCAAGTTG
CCGCTCAAGGAGCAACGCCGGTACTGGAAACTACTCAACCGGCAGGTTAT
CAAGGAGAAGAATGCAGCGGGCCAGAGGCTGTAG
back to top
Synonyms
Publications