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Properties
| Property Name | Value |
|---|
| TranscriptId | 574452 |
| Track | FilteredModels2 |
| ProteinId | 574366 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:586161..587994 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_853 ID=mRNA_853|Name=jgi.p|Nanoce1779_2|574366|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp
ACAGGCTCACGCAACCCGCCTCCAAGCTCGTAGCAAGGCATGGAAGCCAT
AATTGTCAAGCAAGACGAAGGCCAAGCAGGCTTCGTTCGTTATACGATCC
TCGTCACACTAAGGGGGCAATCCTGGTCCATCATCCGCCGCTTCAACGAC
TTCATCCCCCTCCATAACGCCCTCTGTCGGTCCTTTCCTGGCTTCCCTGG
CCGTCTCCCCGTCAAGAAATGGTTTGGTCGGTTTAACCCCGATTTTTTGC
AGGACCGGAAGCTGCAGCTGCAGCACTACTTGGATGTTGTTACTAGATTA
CCGGGCTTTCCAGAAAGTAGCCATGAGGGGTGCCTATTTTTCGAGGTACA
CGTTGGAGAAAGGGAGGCGTAAAAGTTGAGAAAGGGAGGCATCAGAGAAA
TTTGTTCAGAGGGGTGAGGCTTTCAAGGAATTATTGCGTCACTTATCCCT
CGCATTCTCTCCCCTACAATCAGATTGATGGGCACATGGATGGACAAGGA
ATGGATGACCTTGCCCAACAAGATGGCGGCGAAATCGAAGACACGACTCC
GAGCGGGGAAGCAAGCATTTCAGCTATTTTGGACGACACCTCTCATGCTT
TCATTAACACCTCATCGCCCCTGCACCAGGCCTTCATCGAGCAAATGGAC
CCCGTAGAGCTCGCACAGCAACGCAACAAATTGCTCCAGTGGACTTCAGG
TGAGTGAATGTCAATCTAACACTGGCAGGCTAAGCTCGAAATGCATGCCG
AGTGGCAGCGAAGCTTATCTCAAGAGGCCTCTACTCACCATTATCTTCTT
CCAACCCTAATCCTTATATTCTCTTGGTCTCTCCCCTCTTCGCAGGCTTC
CGAGGACCGTCCTCCACTGTGAAAAAGCTGTCATGTGCTGGCCACCTGCA
ACGACAACAACAACAACAAAAACAACAACCACCACCACCACCACCACCAG
CAGCACCGCAACGACAACGACAACAACCACAACAACCACAACAACGACTA
CCACAACCATCACCGCCACCACTACCACAACGACAACAACAAGAAGAAGA
ACAACAACAACTATCACGAAAATCACAAGAACAACATCAACTACAGTCAC
CACATCCACCACCACCACAACAACCACAATCACAATCACAACAACAACAA
CAATCACAAGAACAACATCAATTACAGCCACCACATCCACCACCACTACC
ACCAGCACAACAACAAGAAAAACAGCAAGAAGAACAACATCGATTACCAC
CACCACTATCACCACCACCACAAAAACAACAACAATCACAAGAAGAAGAA
GAAGAAGAAGAAGAAGATTATGATGATGATGAAAAAGAATCGCCGCCATC
ATCATCGTCATTGCTACCACAACA back to topprotein sequence of jgi.p|Nanoce1779_2|574366 >mRNA_853-protein ID=mRNA_853-protein|Name=jgi.p|Nanoce1779_2|574366|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MEAIIVKQDEGQAGFVRYTILVTLRGQSWSIIRRFNDFIPLHNALCRSFP
GFPGRLPVKKWFGRFNPDFLQDRKLQLQHYLDVVTRLPGFPESSHEGCLF
FEVHVGEREA* back to topmRNA from alignment at scaffold_2:586161..587994- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_853 ID=mRNA_853|Name=jgi.p|Nanoce1779_2|574366|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp|location=Sequence derived from alignment at scaffold_2:586161..587994- (Nannochloropsis oceanica)
ACAGGCTCACGCAACCCGCCTCCAAGCTCGTAGCAAGGCATGGAAGCCAT
AATTGTCAAGCAAGACGAAGGTAATGATTAAGTGTGCTGCACATGTCTGC
CCTGTTGTTTCCCTCGCCTCCCCTTTGCCTTGTGCCACCCGCCCACATCT
CTTTCATCACCGTCCCACCCCCTCCAAACCTTCGTCCACAGGCCAAGCAG
GCTTCGTTCGTTATACGATCCTCGTCACACTAAGGGGGCAATCCTGGTCC
ATCATCCGCCGCTTCAACGACTTCATCCCCCTCCATAACGCCCTCTGTCG
GTCCTTTCCTGGCTTCCCTGGCCGTCTCCCCGTCAAGAAATGGTTTGGTC
GGTTTAACCCCGATTTTTTGCAGGACCGGAAGCTGCAGCTGCAGCACTAC
TTGGATGTTGTTACTAGATTACCGGGCTTTCCAGAAAGTAGCCATGAGGG
GTGCCTATTTTTCGAGGTACACGTTGGAGAAAGGGAGGCGTAAAAGTTGA
GAAAGGGAGGCATCAGAGAAATTTGTTCAGAGGGGTGAGGCTTTCAAGGA
ATTATTGCGTCACTTATCCCTCGCATTCTCTCCCCTACAATCAGATTGAT
GGGCACATGGATGGACAAGGAATGGATGACCTTGCCCAACAAGATGGCGG
CGAAATCGAAGACACGTAAGTTTCAGCGAATTGTATTTGCTTATTTTATG
GCTGTAGTTGTGGTATGTTGAATACCATAGGCTGAACTTTTGATAAGACA
ATGTGATCTAGTCTTACAAATTACTACTATTCTCATTCTCTGTCTTTCTT
GTGCCTATTCTACTTATTTGTCCGGGGGCTCCAGGACTCCGAGCGGGGAA
GCAAGCATTTCAGCTATTTTGGACGACACCTCTCATGCTTTCATTAACAC
CTCATCGGTACGTCCTCGTTGTGACTGACATCAGCATCAGAAAGACGCGG
AGGTGTCCTCTTATTGAGACCATGAATATTTGTGATATGGCTTAGACATT
AGCGTTCTCTTCCTTTCTGACAAGGCTCCCTTCCCTCCACCTCTCCTTCC
CTCCCGCCCTCCCCTTCTTCCTCCAAGCCCCTGCACCAGGCCTTCATCGA
GCAAATGGACCCCGTAGAGCTCGCACAGCAACGCAACAAATTGCTCCAGT
GGACTTCAGGTGAGTGAATGTCAATCTAACACTGGCAGGCTAAGCTCGAA
ATGCATGCCGAGTGGCAGCGAAGCTTATCTCAAGAGGCCTCTACTCACCA
TTATCTTCTTCCAACCCTAATCCTTATATTCTCTTGGTCTCTCCCCTCTT
CGCAGGCTTCCGAGGACCGTCCTCCACTGTGAAAAAGCTGTCATGTGCTG
GCCACCTGCAACGACAACAACAACAACAAAAACAACAACCACCACCACCA
CCACCACCAGCAGCACCGCAACGACAACGACAACAACCACAACAACCACA
ACAACGACTACCACAACCATCACCGCCACCACTACCACAACGACAACAAC
AAGAAGAAGAACAACAACAACTATCACGAAAATCACAAGAACAACATCAA
CTACAGTCACCACATCCACCACCACCACAACAACCACAATCACAATCACA
ACAACAACAACAATCACAAGAACAACATCAATTACAGCCACCACATCCAC
CACCACTACCACCAGCACAACAACAAGAAAAACAGCAAGAAGAACAACAT
CGATTACCACCACCACTATCACCACCACCACAAAAACAACAACAATCACA
AGAAGAAGAAGAAGAAGAAGAAGAAGATTATGATGATGATGAAAAAGAAT
CGCCGCCATCATCATCGTCATTGCTACCACAACA back to topCoding sequence (CDS) from alignment at scaffold_2:586161..587994- >mRNA_853 ID=mRNA_853|Name=jgi.p|Nanoce1779_2|574366|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_2:586161..587994- (Nannochloropsis oceanica)
GCCAAGCAGGCTTCGTTCGTTATACGATCCTCGTCACACTAAGGGGGCAA
TCCTGGTCCATCATCCGCCGCTTCAACGACTTCATCCCCCTCCATAACGC
CCTCTGTCGGTCCTTTCCTGGCTTCCCTGGCCGTCTCCCCGTCAAGAAAT
GGTTTGGTCGGTTTAACCCCGATTTTTTGCAGGACCGGAAGCTGCAGCTG
CAGCACTACTTGGATGTTGTTACTAGATTACCGGGCTTTCCAGAAAGTAG
CCATGAGGGGTGCCTATTTTTCGAGGTACACGTTGGAGAAAGGGAGGCGT
AAATGGAAGCCATAATTGTCAAGCAAGACGAAGGCCAAGCAGGCTTCGTT
CGTTATACGATCCTCGTCACACTAAGGGGGCAATCCTGGTCCATCATCCG
CCGCTTCAACGACTTCATCCCCCTCCATAACGCCCTCTGTCGGTCCTTTC
CTGGCTTCCCTGGCCGTCTCCCCGTCAAGAAATGGTTTGGTCGGTTTAAC
CCCGATTTTTTGCAGGACCGGAAGCTGCAGCTGCAGCACTACTTGGATGT
TGTTACTAGATTACCGGGCTTTCCAGAAAGTAGCCATGAGGGGTGCCTAT
TTTTCGAGGTACACGTTGGAGAAAGGGAGGCGTAAATGGAAGCCATAATT
GTCAAGCAAGACGAAG back to top
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