jgi.p|Nanoce1779_2|207598, mRNA_8529 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|207598
Unique NamemRNA_8529
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1623
Alignment locationscaffold_26:123368..124990 +

Link to JBrowse

Properties
Property NameValue
TranscriptId207684
TrackFilteredModels2
ProteinId207598
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:123368..124990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|207598gene_8529Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|207598mRNA_8529-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8529CDS_8529Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8529 ID=mRNA_8529|Name=jgi.p|Nanoce1779_2|207598|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ACACACACACACACACACACACACACACACCCGCCCACTCATTTACGCCT
ACACACATTACGCACAATCTCTCACTCGCTCTCTCTTTCTCGCACGAGCT
CTCCCCCTCCTTCCCTCCCACTTATTATACTCTTACCCGTGCAGTCGCCT
CGGCAAGGCCAGGCTGCATCTTGAGGGACCAGCGTTTGAGAAACTGCATG
TCGGGTTCCTCAAGCATCTCTCCCAGAGTCCTCTCCCAGAGTCCTCTGTG
CCCGCCCCCCCATAGCCACCCCTTGGCCGTGGCCGCTATCAGAAAGGATT
GCCCTCCCTTCGCCCCAGTCCCACCCGCCCCTACCTCTTCCTCCTGCCTG
CGCTCTTCCCCATTTCCTTTTTCCTCCTCCTCATCGTCCTCTTCTTCACG
CCCACTGCTGTCGCAGCCATCACTGTTGCTGTTGCTGCGGCTACTACTAC
TACTACTACTACTACTACTAATTCTGTCGCTGGCACCGCTAACGCCAAAA
CTGTTGCTATTTCCACCTTTCACCACCTCCTTCACCCCTCTCGGCATTCG
CGAAAGAGTAACGCTGTTTGCGATAGTAACATTATTTGGGGCAGTAACAC
GAATCTCTCTCACCCGACTCACCACCACCGCCGTCTCCTTCTCCTCTTCC
TCCTCCTCCTCCCCCCCTCTTCCTCTTCTAGTTTTTCCTCTTTCTTTTCC
TCCCGCCCCATTTGCTCCCCCAACTGCACCTCCTCCTTCCCATCCTCGTC
ATCCTCCCTATTTTTCATCCCTCTCCGCTTTTTCACTCTGGATAGCCAAT
CTAGGATACTCCCGGCAGGCAGGCAAGATAGCGTTGGAACTAATCGTCTT
CGGCCCTTTTCCGATCCCGCCATTCCCCTTCTCGTCCCCTCCCTCTTTCT
TCTCCCCCTCCTCCTCCTCCTCCTGCAGCTGCCGCCGCTGCTGCTGCTCT
CCCTCCACTTTTCCGCCGCCTTGGACTTTTGCCTATGCACTGCCTCTGCC
TTCTTCGCCTGCTCCTGACCTGGCGGTTGCTCCTTTTCCACGGCCACGCT
ACCGAGGCTGCTGCTGCGAGAGACACGGCCCGTATAACCTCTGCCGTCCT
CCCTTTCCTTGCCCGACGCGCCTCTTCGAGACTTGTTGGTGCTGGCGTTG
GTGCTGCTGGTGCTTGTGCTGGCTGCCTTATCGGCCTCTGCCACAACGCC
ACACAGCGCCGCGTTCATGGAGGCAGAGCCGGTCAGTGGGGGGTTGGAGT
GGGCGAGTTTCAGACCTTTCCTGCCGCTTCAGGGCCCGCTCTCGTGCTTC
AACCTCCATTTCCGCTGCTGACCGAGGCTGTAATACAGGTCGGAGAGGAG
ACAGAGGCTGGGGGGTCTTGTTGCAGTTGCACTTGTTGCTGTTGCGGCCG
CTGTTGCTCTTCTTGTCGCCGCTGTGGCTCCTGCTCCACGAGAAGGCCTG
CTGAGGAAGAGGAAGAGGAGTAAGGAGACGAGGAGGAGAAGAATAAGGCG
CAAGAAGAGGAGGAAGGCGAAGACGTGGTCGGGGACGGGGAGGAGGATAA
GAAGAAAAGGAGGGGGGCGAGTCGGAAGCTGAAGACAACGACACCGCCGG
CACGCTTCCTTCTCTACATCTTT
back to top

protein sequence of jgi.p|Nanoce1779_2|207598

>mRNA_8529-protein ID=mRNA_8529-protein|Name=jgi.p|Nanoce1779_2|207598|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MSGSSSISPRVLSQSPLCPPPHSHPLAVAAIRKDCPPFAPVPPAPTSSSC
LRSSPFPFSSSSSSSSSRPLLSQPSLLLLLRLLLLLLLLLLILSLAPLTP
KLLLFPPFTTSFTPLGIRERVTLFAIVTLFGAVTRISLTRLTTTAVSFSS
SSSSSPPLPLLVFPLSFPPAPFAPPTAPPPSHPRHPPYFSSLSAFSLWIA
NLGYSRQAGKIALELIVFGPFPIPPFPFSSPPSFFSPSSSSSCSCRRCCC
SPSTFPPPWTFAYALPLPSSPAPDLAVAPFPRPRYRGCCCERHGPYNLCR
PPFPCPTRLFETCWCWRWCCWCLCWLPYRPLPQRHTAPRSWRQSRSVGGW
SGRVSDLSCRFRARSRASTSISAADRGCNTGRRGDRGWGVLLQLHLLLLR
PLLLFLSPLWLLLHEKAC*
back to top

mRNA from alignment at scaffold_26:123368..124990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8529 ID=mRNA_8529|Name=jgi.p|Nanoce1779_2|207598|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at scaffold_26:123368..124990+ (Nannochloropsis oceanica)
ACACACACACACACACACACACACACACACCCGCCCACTCATTTACGCCT
ACACACATTACGCACAATCTCTCACTCGCTCTCTCTTTCTCGCACGAGCT
CTCCCCCTCCTTCCCTCCCACTTATTATACTCTTACCCGTGCAGTCGCCT
CGGCAAGGCCAGGCTGCATCTTGAGGGACCAGCGTTTGAGAAACTGCATG
TCGGGTTCCTCAAGCATCTCTCCCAGAGTCCTCTCCCAGAGTCCTCTGTG
CCCGCCCCCCCATAGCCACCCCTTGGCCGTGGCCGCTATCAGAAAGGATT
GCCCTCCCTTCGCCCCAGTCCCACCCGCCCCTACCTCTTCCTCCTGCCTG
CGCTCTTCCCCATTTCCTTTTTCCTCCTCCTCATCGTCCTCTTCTTCACG
CCCACTGCTGTCGCAGCCATCACTGTTGCTGTTGCTGCGGCTACTACTAC
TACTACTACTACTACTACTAATTCTGTCGCTGGCACCGCTAACGCCAAAA
CTGTTGCTATTTCCACCTTTCACCACCTCCTTCACCCCTCTCGGCATTCG
CGAAAGAGTAACGCTGTTTGCGATAGTAACATTATTTGGGGCAGTAACAC
GAATCTCTCTCACCCGACTCACCACCACCGCCGTCTCCTTCTCCTCTTCC
TCCTCCTCCTCCCCCCCTCTTCCTCTTCTAGTTTTTCCTCTTTCTTTTCC
TCCCGCCCCATTTGCTCCCCCAACTGCACCTCCTCCTTCCCATCCTCGTC
ATCCTCCCTATTTTTCATCCCTCTCCGCTTTTTCACTCTGGATAGCCAAT
CTAGGATACTCCCGGCAGGCAGGCAAGATAGCGTTGGAACTAATCGTCTT
CGGCCCTTTTCCGATCCCGCCATTCCCCTTCTCGTCCCCTCCCTCTTTCT
TCTCCCCCTCCTCCTCCTCCTCCTGCAGCTGCCGCCGCTGCTGCTGCTCT
CCCTCCACTTTTCCGCCGCCTTGGACTTTTGCCTATGCACTGCCTCTGCC
TTCTTCGCCTGCTCCTGACCTGGCGGTTGCTCCTTTTCCACGGCCACGCT
ACCGAGGCTGCTGCTGCGAGAGACACGGCCCGTATAACCTCTGCCGTCCT
CCCTTTCCTTGCCCGACGCGCCTCTTCGAGACTTGTTGGTGCTGGCGTTG
GTGCTGCTGGTGCTTGTGCTGGCTGCCTTATCGGCCTCTGCCACAACGCC
ACACAGCGCCGCGTTCATGGAGGCAGAGCCGGTCAGTGGGGGGTTGGAGT
GGGCGAGTTTCAGACCTTTCCTGCCGCTTCAGGGCCCGCTCTCGTGCTTC
AACCTCCATTTCCGCTGCTGACCGAGGCTGTAATACAGGTCGGAGAGGAG
ACAGAGGCTGGGGGGTCTTGTTGCAGTTGCACTTGTTGCTGTTGCGGCCG
CTGTTGCTCTTCTTGTCGCCGCTGTGGCTCCTGCTCCACGAGAAGGCCTG
CTGAGGAAGAGGAAGAGGAGTAAGGAGACGAGGAGGAGAAGAATAAGGCG
CAAGAAGAGGAGGAAGGCGAAGACGTGGTCGGGGACGGGGAGGAGGATAA
GAAGAAAAGGAGGGGGGCGAGTCGGAAGCTGAAGACAACGACACCGCCGG
CACGCTTCCTTCTCTACATCTTT
back to top

Coding sequence (CDS) from alignment at scaffold_26:123368..124990+

>mRNA_8529 ID=mRNA_8529|Name=jgi.p|Nanoce1779_2|207598|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_26:123368..124990+ (Nannochloropsis oceanica)
ATGTCGGGTTCCTCAAGCATCTCTCCCAGAGTCCTCTCCCAGAGTCCTCT
GTGCCCGCCCCCCCATAGCCACCCCTTGGCCGTGGCCGCTATCAGAAAGG
ATTGCCCTCCCTTCGCCCCAGTCCCACCCGCCCCTACCTCTTCCTCCTGC
CTGCGCTCTTCCCCATTTCCTTTTTCCTCCTCCTCATCGTCCTCTTCTTC
ACGCCCACTGCTGTCGCAGCCATCACTGTTGCTGTTGCTGCGGCTACTAC
TACTACTACTACTACTACTACTAATTCTGTCGCTGGCACCGCTAACGCCA
AAACTGTTGCTATTTCCACCTTTCACCACCTCCTTCACCCCTCTCGGCAT
TCGCGAAAGAGTAACGCTGTTTGCGATAGTAACATTATTTGGGGCAGTAA
CACGAATCTCTCTCACCCGACTCACCACCACCGCCGTCTCCTTCTCCTCT
TCCTCCTCCTCCTCCCCCCCTCTTCCTCTTCTAGTTTTTCCTCTTTCTTT
TCCTCCCGCCCCATTTGCTCCCCCAACTGCACCTCCTCCTTCCCATCCTC
GTCATCCTCCCTATTTTTCATCCCTCTCCGCTTTTTCACTCTGGATAGCC
AATCTAGGATACTCCCGGCAGGCAGGCAAGATAGCGTTGGAACTAATCGT
CTTCGGCCCTTTTCCGATCCCGCCATTCCCCTTCTCGTCCCCTCCCTCTT
TCTTCTCCCCCTCCTCCTCCTCCTCCTGCAGCTGCCGCCGCTGCTGCTGC
TCTCCCTCCACTTTTCCGCCGCCTTGGACTTTTGCCTATGCACTGCCTCT
GCCTTCTTCGCCTGCTCCTGACCTGGCGGTTGCTCCTTTTCCACGGCCAC
GCTACCGAGGCTGCTGCTGCGAGAGACACGGCCCGTATAACCTCTGCCGT
CCTCCCTTTCCTTGCCCGACGCGCCTCTTCGAGACTTGTTGGTGCTGGCG
TTGGTGCTGCTGGTGCTTGTGCTGGCTGCCTTATCGGCCTCTGCCACAAC
GCCACACAGCGCCGCGTTCATGGAGGCAGAGCCGGTCAGTGGGGGGTTGG
AGTGGGCGAGTTTCAGACCTTTCCTGCCGCTTCAGGGCCCGCTCTCGTGC
TTCAACCTCCATTTCCGCTGCTGACCGAGGCTGTAATACAGGTCGGAGAG
GAGACAGAGGCTGGGGGGTCTTGTTGCAGTTGCACTTGTTGCTGTTGCGG
CCGCTGTTGCTCTTCTTGTCGCCGCTGTGGCTCCTGCTCCACGAGAAGGC
CTGCTGA
back to top
Synonyms
Publications