jgi.p|Nanoce1779_2|602975, mRNA_8528 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602975
Unique NamemRNA_8528
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length684
Alignment locationscaffold_26:122656..123709 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603061
TrackFilteredModels2
ProteinId602975
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:122656..123709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602975gene_8528Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602975mRNA_8528-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8528CDS_8528Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8528 ID=mRNA_8528|Name=jgi.p|Nanoce1779_2|602975|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACGTCCTCCTCCTCCACGTCCTCGTCCTCGTCCTCCTCGCCT
TCCTCGCCCCCCTGCTCCTATTCCTGCTGCAGATGATGCAGCGGTTGGTG
GTGCTATTGGTACGAGTACTGCTGGTAGTGCTACTGCTGCTAATGCGGCT
GCTGGATCCACCTGCCCTTTCTTGCCCCCGCCCTCGCGCCTCACCTCTAG
CCCTGACCTTCCTCCGCAAGAACAGCCCCCAGAGCCTGTGGCGGTCGCTG
GCTTGCACCTGGGATTTCGACTCCGGCCAGTGCCCGTACTGCAGCGCCCA
GCTCCTGATGGCCTCCTCGGTGCGGGGGATGGCGCGCTTGGCGAGACGAC
AGGCCACGTATATCTCCGTCAGCACCCTCTCGACGTGCTCCTGCAGGGAA
TGGAAGGGCAAGGACAGAGGAAGCAGGGCCGTGCAGTCGCCTCGGCAAGG
CCAGGCTGCATCTTGAGGGACCAGCGTTTGAGAAACTGCATGTCGGGTTC
CTCAAGCATCTCTCCCAGAGTCCTCTCCCAGAGTCCTCTGTGCCCGCCCC
CCCATAGCCACCCCTTGGCCGTGGCCGCTATCAGAAAGGATTGCCCTCCC
TTCGCCCCAGTCCCACCCGCCCCTACCTCTTCCT
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protein sequence of jgi.p|Nanoce1779_2|602975

>mRNA_8528-protein ID=mRNA_8528-protein|Name=jgi.p|Nanoce1779_2|602975|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MMQRLVVLLVRVLLVVLLLLMRLLDPPALSCPRPRASPLALTFLRKNSPQ
SLWRSLACTWDFDSGQCPYCSAQLLMASSVRGMARLARRQATYISVSTLS
TCSCREWKGKDRGSRAVQSPRQGQAAS*
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mRNA from alignment at scaffold_26:122656..123709+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8528 ID=mRNA_8528|Name=jgi.p|Nanoce1779_2|602975|organism=Nannochloropsis oceanica|type=mRNA|length=1054bp|location=Sequence derived from alignment at scaffold_26:122656..123709+ (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACGTCCTCCTCCTCCACGTCCTCGTCCTCGTCCTCCTCGCCT
TCCTCGCCCCCCTGCTCCTATTCCTGCTGCAGATGATGCAGCGGTTGGTG
GTGCTATTGGTACGAGTACTGCTGGTAGTGCTACTGCTGCTAATGCGGCT
GCTGGATCCACCTGCCCTTTCTTGCCCCCGCCCTCGCGCCTCACCTCTAG
CCCTGACCTTCCTCCGCAAGAACAGCCCCCAGAGCCTGTGGCGGTCGCTG
GCTTGCACCTGGGATTTCGACTCCGGCCAGTGCCCGTACTGCAGCGCCCA
GCTCCTGATGGCCTCCTCGGTGCGGGGGATGGCGCGCTTGGCGAGACGAC
AGGCCACGTATATCTCCGTCAGCACCCTCTCGACGTGCTCCTGCAGGGAA
TGGAAGGGCAAGGACAGAGGAAGCAGGGCTGCATGAAGTGGATGCGTAGA
GGCAATCGCAAATAATGAGACACAGTTACGTATTTGTGTGTTCGGCACAA
ACAACACGTCATCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTTATAGATAGATCGA
TAGATAAATAGATAGATAGGGAGAGAGAGAGAGAGACCATACACACACAC
ACACACACACACACACACACACACACACACACACACACACACCCGCCCAC
TCATTTACGCCTACACACATTACGCACAATCTCTCACTCGCTCTCTCTTT
CTCGCACGAGCTCTCCCCCTCCTTCCCTCCCACTTATTATACTCTTACCC
GTGCAGTCGCCTCGGCAAGGCCAGGCTGCATCTTGAGGGACCAGCGTTTG
AGAAACTGCATGTCGGGTTCCTCAAGCATCTCTCCCAGAGTCCTCTCCCA
GAGTCCTCTGTGCCCGCCCCCCCATAGCCACCCCTTGGCCGTGGCCGCTA
TCAGAAAGGATTGCCCTCCCTTCGCCCCAGTCCCACCCGCCCCTACCTCT
TCCT
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Coding sequence (CDS) from alignment at scaffold_26:122656..123709+

>mRNA_8528 ID=mRNA_8528|Name=jgi.p|Nanoce1779_2|602975|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_26:122656..123709+ (Nannochloropsis oceanica)
ATGATGCAGCGGTTGGTGGTGCTATTGGTACGAGTACTGCTGGTAGTGCT
ACTGCTGCTAATGCGGCTGCTGGATCCACCTGCCCTTTCTTGCCCCCGCC
CTCGCGCCTCACCTCTAGCCCTGACCTTCCTCCGCAAGAACAGCCCCCAG
AGCCTGTGGCGGTCGCTGGCTTGCACCTGGGATTTCGACTCCGGCCAGTG
CCCGTACTGCAGCGCCCAGCTCCTGATGGCCTCCTCGGTGCGGGGGATGG
CGCGCTTGGCGAGACGACAGGCCACGTATATCTCCGTCAGCACCCTCTCG
ACGTGCTCCTGCAGGGAATGGAAGGGCAAGGACAGAGGAAGCAGGGCCGT
GCAGTCGCCTCGGCAAGGCCAGGCTGCATCTTGAATGATGCAGCGGTTGG
TGGTGCTATTGGTACGAGTACTGCTGGTAGTGCTACTGCTGCTAATGCGG
CTGCTGGATCCACCTGCCCTTTCTTGCCCCCGCCCTCGCGCCTCACCTCT
AGCCCTGACCTTCCTCCGCAAGAACAGCCCCCAGAGCCTGTGGCGGTCGC
TGGCTTGCACCTGGGATTTCGACTCCGGCCAGTGCCCGTACTGCAGCGCC
CAGCTCCTGATGGCCTCCTCGGTGCGGGGGATGGCGCGCTTGGCGAGACG
ACAGGCCACGTATATCTCCGTCAGCACCCTCTCGACGTGCTCCTGCAGGG
AATGGAAGGGCAAGGACAGAGGAAGCAGGGCCGTGCAGTCGCCTCGGCAA
GGCCAGGCTGCATCTTGA
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Synonyms
Publications